水蛭素12肽与低分子量单链尿激酶融合基因的构建、表达及产物特性分析

用化学合成的方法合成了水蛭素12肽基因的编码序列,通过DNA重组技术将水蛭素12肽基因片段与低分子量单链尿激酶cDNA片段连接构建了融合基因。融合基因在大肠杆菌中获得表达。体外实验结果表明,表达的融合蛋白具有溶纤活性和抗凝活性。     

重组人骨形成蛋白—3羧基端肽在大肠杆菌中表达及其诱骨活性

以双顺反子表达载体,在大肠杆菌中经ＩＰＴＧ诱导表达了人骨形成蛋白－３羧基端肽段（ｈＢＭＰ－３Ｃ）,表达量占菌体总蛋白量的１８．５％。目的蛋白为２５ｋＤ、含ｈＢＭＰ－３Ｃ端２１５个氨基酸残基组成的肽段,包括ｈＢＭＰ－３成熟肽和一部分前肽。表达产物以包涵体的形式存在,用含ＴｒｉｔｏｎＸ－１００的洗涤液和５ｍｏｌ／Ｌ以下脲溶液连续涤,可获得较高纯度的重组人骨形成蛋白－３Ｃ端肽,经复性处理成可溶性蛋白,植     

大熊猫乳酸脱氢酶同工酶M_4胰酶水解后的HPLC肽谱分析

 比较了大熊猫与猪LDH-M_4用胰酶水解后的HPLC肽谱;对分离出的各个肽段测定了氨基酸组成与N-末端。经分析,在两者各有的35个肽段中,22个肽段有相同的氨基酸组成与N-末端且在HPLC图谱上有相同的保留时间。另外有13个肽段在氨基酸组成与保留时间上存在差异。对大熊猫LDH-M中部分肽段测定了氨基酸残基序列。结果表明,与结合NAD~+有关的12肽的序列与一级结构已知的猪LDH-M含有Cys165的相应肽段完全一样;在与底物结合部位含有His191的35肽中,两者只有一个氨基酸残基的差异。在N-端的21肽中,有3个残基出现差异;而在C-端的14肽中,仅出现一个残基的差异。     

重组人白细胞介素6部分生化物理学性质的鉴定

采用工程菌 E.coli DH5 α(p IB- h IL- 6 ) ,经过发酵培养、表达和包含体的分离纯化等步骤 ,获得了 N端缺失 5个氨基酸的 rh IL- 6纯品。对其理化生物学性质进行分析。结果表明 ,纯品 N-端氨基酸序列为 MEDSKD… ;在 2 76 nm波长处有一个特异的蛋白吸收峰 ;分子量为 2 1 487.2 ;裂解的肽段分布在理论值的肽段分布范围之内 ;p I为 6 .1 ;能与兔抗人 IL- 6抗体特异性结合 ;比活性达2 .0 5× 1 0 8IU/mg。     

黑豆多肽分离及其抗氧化活性的研究

采用凝胶柱层析法分离具有抗氧化活性的黑豆多肽,并分析其分子量分布;同时还采用DPPH·清除法研究各分离肽段的抗氧化活性,对抗氧化活性最佳的肽段进行动力学分析.结果表明:黑豆多肽经分离后得到3个片段,黑豆小分子肽BSP3对DPPH·自由基具有最强清除作用,其半清除浓度(HSC50)为0.664 mg/mL.所以,分子量小于1000 Da的黑豆小分子肽具有很好的抗氧化活性.     

乙肝病毒表面抗原Pre-S1的N端片段溶液构象研究

利用二维核磁方法对乙肝病毒表面抗原Pre S1N端 2 0～ 47肽段进行溶液构象研究 ,并用距离几何方法搭建分子结构 ,最后用分子动力学模拟方法对结构进行优化 .分析结果发现该肽段存在 4个 β turn ,位置与免疫学定义的抗原抗体结合位点相符 .     

猪β防御素2成熟肽在酵母中的表达

【目的】将猪β防御素2成熟肽基因片段正确整合到酵母基因组染色体上,从而得到稳定的猪β防御素2成熟肽的毕赤酵母表达株。实现猪β防御素2成熟肽的表达。【方法】首先参考酵母偏爱密码子,设计3段引物序列,利用PCR技术扩增得到β防御2成熟肽基因,构建了重组质粒pPIC9k-GST-pBD-2和pPIC9k-pBD-2。将线性化的重组质粒电转化到毕赤酵母KM71细胞中。最后筛选得到酵母阳性克隆,通过不断调节表达条件,实现猪β防御素2成熟肽的表达。【结果】将GST-pBD-2基因序列和pBD-2基因序列分别成功整合到酵母KM71基因组中,重组毕赤酵母工程菌构建成功;重组酵母蛋白GST-pBD-2和PBD-2都成功获得了表达;PBD-2成熟肽表达上清对猪霍乱沙门氏菌弱毒株C500有一定的抑制作用。【结论】获得表达pBD-2成熟肽的酵母菌株,本实验是用真核细胞表达pBD-2成熟肽的一次探索,为后续大量表达pBD-2成熟肽方法的研究打下了基础。     

活性氧所致超氧化物歧化酶肽链断裂的观察

探究活性氧所致铜锌超氧化物歧化酶（ＳＯＤ）肽链断裂的情况。将过氧化氢或抗坏血酸－Ｆｅ（Ⅲ）分别作用于马来酰亚胺标记的ＳＯＤ,然后用高效液相反相色谱（ＲＰＨＰＬＣ）分析,经１ｍｍｏｌ／ＬＨ２Ｏ２处理后ＳＯＤ用ＲＰ－ＨＰＬＣ分离出二个肽段,用顺磁共振检测显示只有一个肽段具有马来酰亚胺信号,经５ｍｍｏｌ／ＬＨ２Ｏ２处理后ＳＯＤ有四个肽段生成,其中有一个肽段具有马来酰亚胺信号,用５ｍｍｏｌ／Ｌ抗坏血酸和０．０１ｍｍｏｌ／ＬＦｅＣｌ３处理后ＳＯＤ有三个肽段生成,用５０ｍｍｏｌ／Ｌ抗坏血酸及１．０ｍｍｏｌ／ＬＦｅＣｌ３处理后ＳＯＤ也产生相同的三个肽段,只是肽段的量多．结果提示Ｈ２Ｏ２所致ＳＯＤ肽链断裂无“定点”现象,而抗坏血酸－Ｆｅ（Ⅲ）所致ＳＯＤ肽链断裂呈“定点”断裂。     

人绒毛膜促性腺激素β亚基酶解片段特性的研究

以嗜热菌蛋白酶水解人绒毛膜促性腺激素,亚基(hCG_β),用HPLC分离制备酶解产物。酶解片段经竞爭性放射分析,不能与LH/hCG受体结合,但保留近乎全部hCG_β的免疫反应性.园二色谱分析,与hCG_β比较,酶解片段所含α螺旋减少,β折叠与无规卷曲含量增多。表明hCG_β可能有几个肽段和/或糖链参与hCG受体相互作用;酶解片段中仍含有hCG_β的主要决定簇,该决定簇与hCG_β结合受体的结构有区别。     

小鼠外胎盘锥细胞与层粘连蛋白相互作用机制的研究

本文用LN及含其活性位点序列的合成肽段cYIGSR和RGDS对小鼠EPC细胞与LN的相互作用机制进行研究。结果表明:合成肽段cYIGSR和RGDS能促进EPC粘附并具协同效应。cYIGSR还能促进EPC扩展与次生TGCs迁移。LNA链上RGD和B_1链上YIGSR两个活性位点协同地参与了LN对EPC的粘附、扩展以及次生TGCs的迁移的促进作用。cY R合用不能完全竞争性抑制EPC与LN的结合,说明还有其他作用位点存在。     

Phage display screening against a set of targets to establish peptide-based sugar mimetics and molecular docking to predict binding site

A novel selection approach is presented to screen phage display peptide libraries against sets of receptors that share specificity for the same ligand. This strategy was applied to the discovery of glycomimetic peptides. Through these screens, a number of peptide clones were discovered that bind the lectins used in the screen, in a sugar competitive manner. In addition, the majority of the selected peptides demonstrate sugar type mimicry consistent with lectin specificity. Docking studies were conducted to establish whether the mimetic peptides bind to the lectin ConA at the sugar binding site or to a nearby, alternative site shown to bind to YPY-containing peptides previously discovered from single-target screens. Of the three cyclic peptides subjected to computational docking, CNTPLTSRC had the highest predicted affinity and CSRILTAAC demonstrated specificity for the sugar binding site comparable to the natural ligand itself.     

Identification of a system required for the functional surface localization of sugar binding proteins with class III signal peptides in Sulfolobus solfataricus

The hyperthermophilic archaeon Sulfolobus solfataricus contains an unusual large number of sugar binding proteins that are synthesized as precursors with a class III signal peptide. Such signal peptides are commonly used to direct archaeal flagellin subunits or bacterial (pseudo)pilins into extracellular macromolecular surface appendages. Likewise, S. solfataricus binding proteins have been suggested to assemble in higher ordered surface structures as well, tentatively termed the bindosome. Here we show that S. solfataricus contains a specific system that is needed for the functional surface localization of sugar binding proteins. This system, encoded by the bas (bindosome assembly system) operon, is composed of five proteins: basABC, three homologues of so-called bacterial (pseudo)pilins; BasE, a cytoplasmic ATPase; and BasF, an integral membrane protein. Deletion of either the three (pseudo)pilin genes or the basEF genes resulted in a severe defect of the cells to grow on substrates which are transported by sugar binding proteins containing class III signal peptides, while growth on glucose and maltose was restored when the corresponding genes were reintroduced in these cells. Concomitantly, DeltabasABC and DeltabasEF cells were severely impaired in glucose uptake even though the sugar binding proteins were normally secreted across the cytoplasmic membrane. These data underline the hypothesis that the bas operon is involved in the functional localization of sugar binding proteins at the cell surface of S. solfataricus. In contrast to surface structure assembly systems of Gram-negative bacteria, the bas operon seems to resemble an ancestral simplified form of these machineries.     

Carbohydrate recognition of gramicidin S analogues in aqueous medium.

We have designed and synthesized of carbohydrate-binding peptides, gramicidin S analogues. Asn/Asp/Gln and Trp residues in the peptides were employed as the binding sites for carbohydrates by hydrogen-bonding interaction and the creation units for hydrophobic pocket to promote the interaction, respectively. The data of fluorescence spectroscopy and affinity column chromatography indicated that the peptides possessed the binding ability for some carbohydrates in aqueous medium. As a result of 1H NMR study, nuclear Overhauser effects between aromatic side chains of a peptide, [Gln(1,1'),Trp(3,3')]-gramisidin S and mannose were observed, indicating that the interaction of the peptide with the sugar occurred in the hydrophobic environment formed by Trp and Phe residues.     

蛋白质MOTIF（纹基）的搜索及库的构建

蛋白质ＭＯＴＩＦ识别方法是研究和预测蛋白质结构和功能的一种工具。本文用理化性质矩阵描述蛋白质的特征保守多肽,构建了一个包含两千多个ＭＯＴＩＦ的库。并编制了快速而灵敏的ＯＴＩＦ搜索软件。文中特别以３种重要而难辨别的ＭＯＴＩＦ作为例证。此３种ＭＯＴＩＦ是：在ＭＲＮＡ剪接和翻译中起关键作用的ＲＮＰＭＯＴＩＦ,用于研究甘油激酶缺损和非胰岛素糖尿病等人类遗传病机制的糖激酶ＭＯＴＩＦ,以及许多直核组织中媒介序     

Heptapeptide ligands against receptor-binding sites of influenza hemagglutinin toward anti-influenza therapy

The initial attachment of influenza virus to cells is the binding of hemagglutinin (HA) to the sialyloligosaccharide receptor; therefore, the small molecules that inhibit the sugar–protein interaction are promising as HA inhibitors to prevent the infection. We herein demonstrate that sialic acid-mimic heptapeptides are identified through a selection from a primary library against influenza virus HA. In order to obtain lead peptides, an affinity selection from a phage-displayed random heptapeptide library was performed with the HAs of the H1 and H3 strains, and two kinds of the HA-binding peptides were identified. The binding of the peptides to HAs was inhibited in the presence of sialic acid, and plaque assays indicated that the corresponding N-stearoyl peptide strongly inhibited infections by the A/Aichi/2/68 (H3N2) strain of the virus. Alanine scanning of the peptides indicated that arginine and proline were responsible for binding. The affinities of several mutant peptides with single-amino-acid substitutions against H3 HA were determined, and corresponding docking studies were performed. A Spearman analysis revealed a correlation between the affinity of the peptides and the docking study. These results provide a practicable method to design of peptide-based HA inhibitors that are promising as anti-influenza drugs.     

Tentacle type peptides as artificial lectins against sulfated Lewis X and A

An effort has generated peptides from a phage-displayed library that selectively bind to the sulfated carbohydrates HSO3-LeA and HSO3-LeX. Even though more than six phaged peptides were identified by using the biopanning procedure, only one synthesized peptide displayed a consistently high binding affinity and specificity against the cognate HSO3-LeA. This dimeric, tentacle type peptide has a low micromolar affinity against the cognate sugar, which is even more specific than an antibody (Table 2(b)). Thus, it suggests that tentacle type peptides can be used as alternatives to antibodies to bind to aberrant cell-surface carbohydrates that are either the causes or results of carbohydrate-indicating disease states.     

Glycosylated analogs of formaecin I and drosocin exhibit differential pattern of antibacterial activity

The synthetic glycopeptides are interesting model systems to study the effect of O-glycosylation in modulating their function and structure. A series of glycosylated analogs of two antibacterial peptides, formaecin I and drosocin, were synthesized by varying the nature of sugar and its linkage with bioactive peptides to understand the influence of structure variation of glycosylation on their antibacterial activities. Higher antibacterial activities of all glycopeptides compared to their respective non-glycosylated counterparts emphasize in part the importance of sugar moieties in functional implications of these peptides. The consequences of the unique differences among the analogs were apparent on their antibacterial activities but not evident structurally by circular dichroism studies. We have shown that differently glycosylated peptides exhibit differential effect among each other when tested against several Gram-negative bacterial strains. The change of monosaccharide moiety and/or its anomeric configuration in formaecin I and drosocin resulted into decrease in the antibacterial activity in comparison to that of the native glycopeptide, but the extent of decrease in antibacterial activity of glycosylated drosocin analogs was less. Probably, the variation in peptide conformation arising due to topological dissimilarities among different sugars in the same peptide resulting in possible modulation in binding properties appears to be responsible for differences in their antibacterial activities. Indeed, these effects of glycosylation are found to be sequence-specific and depend in the milieu of amino acid residues. Interestingly, none of the carbohydrate variants affected the basic property of these peptides, which is non-hemolytic and non-toxicity to eukaryotic cells.     

ATP-dependent substrate occlusion by the human erythrocyte sugar transporter

Human erythrocyte sugar transport presents a functional complexity that is not explained by existing models for carrier-mediated transport. It has been suggested that net sugar uptake is the sum of three serial processes: sugar translocation, sugar interaction with an intracellular binding complex, and the release from this complex into bulk cytosol. The present study was carried out to identify the erythrocyte sugar binding complex, to determine whether sugar binding occurs inside or outside the cell, and to determine whether this binding complex is affected by cytosolic ATP or transporter quaternary structure. Sugar binding assays using cells and membrane protein fractions indicate that sugar binding to erythrocytes is quantitatively accounted for by sugar binding to the hexose transport protein, GluT1. Kinetic analysis of net sugar fluxes indicates that GluT1 sugar binding sites are cytoplasmic. Intracellular ATP increases GluT1 sugar binding capacity from 1 to 2 mol of 3-O-methylglucose/mol GluT1 and inhibits the release of bound sugar into cytosol. Reductant-mediated, tetrameric GluT1 dissociation into dimeric GluT1 is associated with the loss of ATP and 3-O-methylglucose binding. We propose that sugar uptake involves GluT1-mediated, extracellular sugar translocation into an ATP-dependent cage formed by GluT1 cytoplasmic domains. Caged or occluded sugar has three possible fates: (1) transport out of the cell (substrate cycling); (2) interaction with sugar binding sites within the cage, or (3) release into bulk cytosol. We show how this hypothesis can account for the complexity of erythrocyte sugar transport and its regulation by cytoplasmic ATP.     

Structural and functional relationships between the lectin and arm domains of calreticulin

Calreticulin and calnexin are key components in maintaining the quality control of glycoprotein folding within the endoplasmic reticulum. Although their lectin function of binding monoglucosylated sugar moieties of glycoproteins is well documented, their chaperone activity in suppressing protein aggregation is less well understood. Here, we use a series of deletion mutants of calreticulin to demonstrate that its aggregation suppression function resides primarily within its lectin domain. Using hydrophobic peptides as substrate mimetics, we show that aggregation suppression is mediated through a single polypeptide binding site that exhibits a K(d) for peptides of 0.5-1 μM. This site is distinct from the oligosaccharide binding site and differs from previously identified sites of binding to thrombospondin and GABARAP (4-aminobutyrate type A receptor-associated protein). Although the arm domain of calreticulin was incapable of suppressing aggregation or binding hydrophobic peptides on its own, it did contribute to aggregation suppression in the context of the whole molecule. The high resolution x-ray crystal structure of calreticulin with a partially truncated arm domain reveals a marked difference in the relative orientations of the arm and lectin domains when compared with calnexin. Furthermore, a hydrophobic patch was detected on the arm domain that mediates crystal packing and may contribute to calreticulin chaperone function.     

Glutaraldehyde cross-linking of lectins to marker enzymes: protection of binding site by specific sugars

The role of bound specific sugars in protecting the sugar binding activity of several galactose binding proteins during their covalent conjugation to horse radish peroxidase by glutaraldehyde-mediated cross-linking was examined by: a) affinity matrix binding of the conjugate, b) enzyme linked lectin assay and c) hemagglutination assay. During conjugation using 1% glutaraldehyde, protection of jack fruit (Artocarpus integrifolia) lectin (jacalin) activity depended on concentration of specific sugar present during conjugation; optimum protection was offered by 50 mM galactose. This indicated the presence of one or more primary groups at the binding site of jacalin, which is (are) essential for sugar binding. On the other hand, such essential amino group(s) was not indicated at the sugar binding site of the peanut lectin, bovine heart galectin or of the human serum anti alpha-galactoside antibody, since exclusion of sugar during their conjugation to HRP did not diminish sugar binding activity. The differential behavior is discussed in the light of reported differences in sugar specificities. Results indicated that sugar mediated blocking of active site may be used in characterization of the latter in lectins.