Colonization of rye green manure and peanut fruit debris by Aspergillus falvus and Aspergillus niger group in field soils.

Aspergillus flavus and Aspergillus niger group colonization of deep-plowed, decomposing rye green manure cover crops in peanut field soils was studied in four fields during 1972 and 1973; colonization of decomposing peanut fruits was studied in 1972 in two fields. A. flavus colonization of rye and peanut fruits was greater in soils of heavy texture, and an A. flavus population as high as 165 propagules per g of soil was observed in soil adjacent to rye, whereas A. flavus populations in soils not associated with rye were 18 propagules per g of soil or lower. Highest A. flavus populations in soil adjacent to decomposing peanut fruits were usually comparable to populations associated with rye. Little decomposing rye or peanut fruit colonization was generally observed by the A. flavus competitor, A. niger group. A. flavus may maintain or increase its inoculum potential by colonization of these and other moribund plant tissues.     

Agro-ecology of onion couch (Arrhenathemm elatius var. bulbosum).

The agro-ecology of onion couch (Arrhenatherum elatius var. bulbosum), a well known weed of arable land is studied. Contribution of seeds from onion couch and a more widespread variety of Arrhenatherum elatius: tall oat-grass, towards future ingress of onion couch in arable fields has indicated that the tall oat-grass variety is not a potential weed of arable land. It appears that vegetative propagules rather than the seeds are the effective means of propagation of the onion couch variety in arable fields. An experiment performed to test any modifying effect of the soil texture indicated that onion couch is restricted to loamy soils and there is a complete absence from heavy clays and sandy soils. This could be due to the moist and protective micro-environment provided by the texture of the soils to partially buried vegetative propagules of onion couch, which are susceptible to drought.     

Changes in Organic Carbon and Trace Elements in the Soil of Willow Short-Rotation Coppice Plantations

Short rotation coppice (SRC) is a biomass production system for energy usually grown on former agricultural land with fast-growing tree species. In Sweden, willow SRC has been grown since the late 1980s. SRC on arable soils may induce changes in some soil quality parameters due to differences in crop characteristics and management practices. In this study, pH, organic carbon (C), and trace element concentrations in the soil of 14 long-term (10–20 years) commercial willow SRC fields in Sweden were compared with those in adjacent, conventionally managed arable soils. The results showed that organic C concentrations in the topsoil and subsoil of SRC fields were, on average, significantly higher (9 % in topsoil, 27 % in subsoil) than in the reference fields. When comparisons were made only for the ten sites where the reference field had a crop rotation dominated by cereal crops, the corresponding figures were 10 % and 22 %. The average concentration of cadmium (Cd), which is considered the most hazardous trace element for human health in the food chain, was 12 % lower in the topsoil of SRC fields than in the reference fields. In the corresponding comparison of subsoils, no such difference was found. For chromium (Cr), copper (Cu), nickel (Ni), lead (Pb), and zinc (Zn), there were no significant differences in concentrations between SRC fields and the reference fields in either topsoil or subsoil. Negligible differences in pH in the same comparisons were found.     

Population dynamics of Macrophomina phaseolina in relation to disease management: A review

Macrophomina phaseolina (Tassi) Goid. causes seedling blight, charcoal rot, leaf blight, stem and pod rot on over 500 plant species in different parts of the world. The pathogen survives as sclerotia formed in host tissues which are released into the soil as tissue decay. Low soil moisture is considered the more important predisposing factor for M. phaseolina-induced diseases than high temperature. The intensity of the disease on a crop is related to the population of viable sclerotia in the soil and abiotic factors. The influence of various management strategies in reducing the number of viable propagules of the pathogen in the soil has been studied in order to minimize the impact of the disease. Any management approach that reduces inoculum density in the soil may reduce disease incidence on the host. However, to reduce inoculum density, quantitative determination of viable propagules from soil is necessary in order to understand the effect of management strategies on the population dynamics of this pathogen. Considerable work has been done on organic amendments, changing crop sequences with tolerant crops, fumigants, herbicides and tillage in managing M. phaseolina populations in the soil and the resulting disease. Solarization has been used in controlling M. phaseolina in different countries where this pathogen is causing disease on economically valuable crops. However, this method of soil disinfestation was effective in eliminating viable populations at the top soil layer although by combining other approaches its effectiveness was improved at lower soil depth. Use of biological control agents with or without organic amendments or after solarization has emerged to be a practical management approach in the control of M. phaseolina. In this paper, an attempt has been made to review those research findings where the influence of various management approaches on survival of M. phaseolina mainly sclerotia have been investigated.     

Soil populations of Thielaviopsis basicola associated with cherry rootstocks in relation to effects of the pathogen on their growth

Large differences were found between populations of Thielaviopsis basicola in soils from nursery layer-beds of different cherry rootsock clones. The soils were classified primarily into those with small (< 700 propagules/g) and those with large (3600–45000 propagules/g) populations, although significant differences occurred between soil populations in the latter group. Clones associated with small soil populations (Prunus pseudocerasus, and P. avium×P. pseudocerasus hybrids) were highly resistant to T. basicola root rot; clones associated with large soil populations (selections and intraspecific crosses of P. avium, and hybrids of P. avium × P. incisa) were susceptible. The results indicated that severe pathogenesis was associated with varying levels of parasitism in different clones, but not that extensive parasitism of cherry species occurred without pathogenesis. Resistance to T. basicola in the P. pseudocerasus hybrids is an important asset to these potential cherry rootsocks.     

Effect of temperature on the in vitro reproductive fitness of Pratylenchus coffeae populations from Vietnam

The in vitro reproductive fitness on carrot discs of 10 Pratylenchus coffeae populations collected from different agricultural crops in different agro-ecological regions in Vietnam was studied and compared with the reproductive fitness of a P. coffeae population from Ghana. Few major differences in in vitro reproductive fitness on carrot discs among the 10 P. coffeae populations from Vietnam examined (with the exception of one population originally isolated from the roots of an unidentified ornamental tree and one population originally isolated from banana), and between these populations and the P. coffeae population originally isolated from banana in Ghana were observed. Our observations indicate that although the optimum temperature for reproduction of three P. coffeae populations from Vietnam examined is 25?°C to, at least, 30?°C, these populations are also tolerant to low temperatures (15–20?°C) enabling them to survive the low temperatures which occur during the winter in the northern and central parts of Vietnam.     

Populations of Rhizoctonia solani in soil under crops in rotation with sugar beet

Using a soil debris isolation method, populations of Rhizoctonia solani were monitored over a 4 -yr period in four fields which were initially cropped to sugar beet and in which four areas of Rhizoctonia crown rot diseased beets (DA) and four areas of apparently healthy beets (AH) had been selected and precisely located. Soil from these areas was assayed during the subsequent crops, which included sugar beet, tomato, cucumber, maize and soybean. No significant differences in colony counts were found between the soils in DA and AH on any of 30 sampling dates. R. solani population counts were, in general, quite low, except under sugar beet and following tomato harvest. Areas of diseased beet and high R. solani soil populations that developed in subsequent sugar beet crops did not necessarily coincide with the previously selected diseased areas. High R. solani populations developed from parasitic activity on sugar beet or saprophytically on tomato crop residues. Of the other crops, both maize and soybean may have slightly increased the low R. solani residual populations in soil. The monitoring of R. solani populations in the season prior to, and during the early season of sugar beet cropping did not provide a basis for forecasting disease in fields or sites within fields. The initiation of disease patches in these sugar beet fields was therefore governed by factors other than inoculum density.     

Variation of Bacterial Community Diversity in Rhizosphere Soil of Sole-Cropped versus Intercropped Wheat Field after Harvest

As the major crops in north China, spring crops are usually planted from April through May every spring and harvested in fall. Wheat is also a very common crop traditionally planted in fall or spring and harvested in summer year by year. This continuous cropping system exhibited the disadvantages of reducing the fertility of soil through decreasing microbial diversity. Thus, management of microbial diversity in the rhizosphere plays a vital role in sustainable crop production. In this study, ten common spring crops in north China were chosen sole-cropped and four were chosen intercropped with peanut in wheat fields after harvest. Denaturing gradient gel electrophoresis (DGGE) and DNA sequencing of one 16S rDNA fragment were used to analyze the bacterial diversity and species identification. DGGE profiles showed the bacterial community diversity in rhizosphere soil samples varied among various crops under different cropping systems, more diverse under intercropping system than under sole-cropping. Some intercropping-specific bands in DGGE profiles suggested that several bacterial species were stimulated by intercropping systems specifically. Furthermore, the identification of these dominant and functional bacteria by DNA sequencing indicated that intercropping systems are more beneficial to improve soil fertility. Compared to intercropping systems, we also observed changes in microbial community of rhizosphere soil under sole-crops. The rhizosphere bacterial community structure in spring crops showed a strong crop species-specific pattern. More importantly, Empedobacter brevis, a typical plant pathogen, was only found in the carrot rhizosphere, suggesting carrot should be sown prudently. In conclusion, our study demonstrated that crop species and cropping systems had significant effects on bacterial community diversity in the rhizosphere soils. We strongly suggest sorghum, glutinous millet and buckwheat could be taken into account as intercropping crops with peanut; while hulled oat, mung bean or foxtail millet could be considered for sowing in wheat fields after harvest in North China.     

Viability of VA-mycorrhizal fungi following soil solarization and fumigation

Two field experiments were conducted to examine the effect of soil solarization on the survival of arbuscular mycorrhizal (AM) fungi and root colonization of three crops. The experiments were carried out in a loamy sand soil (Rehovot) and a silty soil (Bet She'an Valley). For both experiments, assessment of indigenous AM fungal populations by the most probable number (MPN) method indicated that populations were reduced to zero after 2 or 4 weeks of solarization treatment. However, Glomus intraradices inoculum applied to the soil prior to solarization remained viable even after 8 weeks of solarization. After soil fumigation with methyl bromide both indigenous and applied AM fungi were nondetectable. Percentage root colonization by the indigenous AM fungal populations, together with plant-growth parameters, were assessed for three crops: onion and wheat (Rehovot), and carrot (Bet She'an). When sown on solarized field plots, onion and carrot seedlings showed a plant growth retardation, whereas wheat showed an increased growth response. Root colonization by indigenous AM fungi was not evident until 6 weeks after seedling emergence. Fumigation with methyl bromide reduced root colonization by indigenous AM populations, and reduced onion and wheat plant development at early growth stages. In a laboratory experiment, a temperature of 45° C for up to 24 h did not affect AM spore viability, indicating that temperatures reached during the solarization treatment cannot solely account for the reduced AM fungi viability in the field. Apparently, soil solarization temporarily delays root colonization by indigenous AM fungi until 6-8 weeks after plant emergence.     

Diet selection by hares (Lepus europaeus) in arable land and its implications for habitat management

Populations of European hares (Lepus europaeus) have experienced a dramatic decline throughout Europe in recent decades. European hares are assumed to prefer weeds over arable crops, and weed abundance was reduced by the intensification of agriculture. Therefore, modern agriculture has been blamed as a major factor affecting European hare populations. However, it is questionable whether European hares select weeds at all, as previous studies had major methodological limitations. By comparing availability and use of plants with Chesson’s Electivity Index, we investigated whether the European hare actually feeds selectively on different plants in arable land. Food availability and use were dominated by cultivated crops (e.g. winter wheat, spring barley and sugar beet). Diet selection analysis revealed that in autumn and winter, European hares predominantly preferred cultivated crops (winter wheat) and food items provided by hunters (tubers of sugar beet and carrot). In spring and summer, apart from soy, only weeds (e.g. clover and corn poppy) were positively selected, especially after cereal crops were harvested. We suggest that the decline in European hare populations throughout Europe was facilitated by the decrease in weed abundance. Wildlife-friendly set-asides in arable land have the potential to reconcile the European Union’s Common Agricultural Policy with wildlife conservation.     

Arbuscular mycorrhizal propagules in soils from a tropical forest and an abandoned cornfield in Quintana Roo, Mexico: visual comparison of most-probable-number estimates

The present study was aimed at comparing the number of arbuscular mycorrhizal fungi (AMF) propagules found in soil from a mature tropical forest and that found in an abandoned cornfield in Noh-Bec Quintana Roo, Mexico, during three seasons. Agricultural practices can dramatically reduce the availability and viability of AMF propagules, and in this way delay the regeneration of tropical forests in abandoned agricultural areas. In addition, rainfall seasonality, which characterizes deciduous tropical forests, may strongly influence AMF propagules density. To compare AMF propagule numbers between sites and seasons (summer rainy, winter rainy and dry season), a “most probable number” (MPN) bioassay was conducted under greenhouse conditions employing Sorgum vulgare L. as host plant. Results showed an average value of 3.5 ± 0.41 propagules in 50 ml of soil for the mature forest while the abandoned cornfield had 15.4 ± 5.03 propagules in 50 ml of soil. Likelihood analysis showed no statistical differences in MPN of propagules between seasons within each site, or between sites, except for the summer rainy season for which soil from the abandoned cornfield had eight times as many propagules compared to soil from the mature forest site for this season. Propagules of arbuscular mycorrhizal fungi remained viable throughout the sampling seasons at both sites. Abandoned areas resulting from traditional slash and burn agriculture practices involving maize did not show a lower number of AMF propagules, which should allow the establishment of mycotrophic plants thus maintaining the AMF inoculum potential in these soils.     

Denitrification in field soils

Summary Recent denitrification research is reviewed to answer questions a) how much N is lost from the soil as N₂ and N₂O and b) how do agronomic practices affect this loss? The methods used to quantify denitrification are also discussed. Gaseous losses of inorganic N range between the equivalent of 0 to 20 per cent of the fertilizer N applied to arable soils and 0–7 per cent on grassland soils. Losses are greater on undrained land and also after using direct drilling to establish arable crops.Appendix 1 summarizes reported measurements of gaseous N losses.Introductory lecture     

Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils

Degradation of agricultural land and the resulting loss of soil biodiversity and productivity are of great concern. Land-use management practices can be used to ameliorate such degradation. The soil bacterial communities at three separate arable farms in eastern England, with different farm management practices, were investigated by using a polyphasic approach combining traditional soil analyses, physiological analysis, and nucleic acid profiling. Organic farming did not necessarily result in elevated organic matter levels; instead, a strong association with increased nitrate availability was apparent. Ordination of the physiological (BIOLOG) data separated the soil bacterial communities into two clusters, determined by soil type. Denaturing gradient gel electrophoresis and terminal restriction fragment length polymorphism analyses of 16S ribosomal DNA identified three bacterial communities largely on the basis of soil type but with discrimination for pea cropping. Five fields from geographically distinct soils, with different cropping regimens, produced highly similar profiles. The active communities (16S rRNA) were further discriminated by farm location and, to some degree, by land-use practices. The results of this investigation indicated that soil type was the key factor determining bacterial community composition in these arable soils. Leguminous crops on particular soil types had a positive effect upon organic matter levels and resulted in small changes in the active bacterial population. The active population was therefore more indicative of short-term management changes.     

Assessment of Aboveground and Belowground Vegetative Fragments as Propagules in the Bioenergy Crops Arundo donax and Miscanthus × giganteus

Giant miscanthus (Miscanthus × giganteus) and giant reed (Arundo donax) are leading bioenergy crops. Both exhibit many invasive characteristics, though only giant reed is known to be invasive. Despite this, neither produces viable seed, limiting movement to vegetative propagules. Therefore, to assess vegetative fragments as potential propagules, we quantified seasonal changes in culm node viability and performance in giant miscanthus and giant reed under greenhouse conditions. Giant miscanthus culms were collected in spring, summer, fall, and winter from established fields, while giant reed culms were collected in summer, fall, and winter from feral stands. Treatments at each timing consisted of whole culms and single-node culm fragments planted in soil or placed in standing water for an 8-week period. Giant miscanthus whole culms and fragments produced shoots and roots in both soil and standing water immediately following cutting from spring to summer, but failed to produce shoots and roots after fall and winter cutting dates. All rhizome fragments survived and generated shoots and roots after burial. By comparison, giant reed produced shoots and roots in both soil and standing water throughout the year, regardless of cutting date. With giant miscanthus, precautions should be taken when living culms or rhizome fragments are harvested and transported through riparian habitats during the summer months. By comparison, giant reed showed a remarkable increase in propagule generation and productivity throughout the year and, thus, escaped propagules present a far greater risk of unintentional establishment compared to giant miscanthus.     

Soil Type Is the Primary Determinant of the Composition of the Total and Active Bacterial Communities in Arable Soils

Degradation of agricultural land and the resulting loss of soil biodiversity and productivity are of great concern. Land-use management practices can be used to ameliorate such degradation. The soil bacterial communities at three separate arable farms in eastern England, with different farm management practices, were investigated by using a polyphasic approach combining traditional soil analyses, physiological analysis, and nucleic acid profiling. Organic farming did not necessarily result in elevated organic matter levels; instead, a strong association with increased nitrate availability was apparent. Ordination of the physiological (BIOLOG) data separated the soil bacterial communities into two clusters, determined by soil type. Denaturing gradient gel electrophoresis and terminal restriction fragment length polymorphism analyses of 16S ribosomal DNA identified three bacterial communities largely on the basis of soil type but with discrimination for pea cropping. Five fields from geographically distinct soils, with different cropping regimens, produced highly similar profiles. The active communities (16S rRNA) were further discriminated by farm location and, to some degree, by land-use practices. The results of this investigation indicated that soil type was the key factor determining bacterial community composition in these arable soils. Leguminous crops on particular soil types had a positive effect upon organic matter levels and resulted in small changes in the active bacterial population. The active population was therefore more indicative of short-term management changes.     

Stimulated saprotrophic fungi in arable soil extend their activity to the rhizosphere and root microbiomes of crop seedlings

Saprotrophic fungi play an important role in ecosystem functioning and plant performance, but their abundance in intensively managed arable soils is low. Saprotrophic fungal biomass in arable soils can be enhanced with amendments of cellulose-rich materials. Here, we examined if sawdust-stimulated saprotrophic fungi extend their activity to the rhizosphere of crop seedlings and influence the composition and activity of other rhizosphere and root inhabitants. After growing carrot seedlings in sawdust-amended arable soil, we determined fungal and bacterial biomass and community structure in roots, rhizosphere and soil. Utilization of root exudates was assessed by stable isotope probing (SIP) following ¹³CO₂-pulse-labelling of seedlings. This was combined with analysis of lipid fatty acids (PLFA/NLFA-SIP) and nucleic acids (DNA-SIP). Sawdust-stimulated Sordariomycetes colonized the seedling's rhizosphere and roots and actively consumed root exudates. This did not reduce the abundance and activity of bacteria, yet higher proportions of α-Proteobacteria and Bacteroidia were seen. Biomass and activity of mycorrhizal fungi increased with sawdust amendments, whereas exudate consumption and root colonization by functional groups containing plant pathogens did not change. Sawdust amendment of arable soil enhanced abundance and exudate-consuming activity of saprotrophic fungi in the rhizosphere of crop seedlings and promoted potential beneficial microbial groups in root-associated microbiomes.     

Persistence of Escherichia coli O157:H7 in soil and on plant roots

Soil microcosms were inoculated with Escherichia coli O157:H7 to test persistence in fallow soil, on roots of cover crops and in presence of manure. In fallow soils, E. coli O157:H7 persisted for 25-41 days, on rye roots for 47-96 days and on alfalfa roots, in a silt loam soil, for 92 days whereas on other legumes persistence ranged from 25-40 days, similar to fallow soil. Manure did not seem to affect the persistence of E. coli O157:H7 in these soils. Indigenous and manure-applied coliform populations often decreased faster when E. coli O157:H7 was applied, indicating possible competition between microflora. Coliform populations in microcosms not inoculated with E. coli O157:H7 decreased more slowly or increased. Microbial community analyses showed little effect for E. coli O157:H7 inoculation or addition of manure. Microbial community metabolic activity was enhanced from rye roots after 14 days and by 63 days from alfalfa roots. Microbial community lactose utilization increased over time on rye roots in all soils and on alfalfa roots in a silt loam soil when E. coli O157:H7 was inoculated. Lactose utilization also increased for uninoculated rye roots, soil around rye roots and in some fallow soils. Our data suggest that clay increases persistence and activity of E. coli O157:H7 and other coliforms. In frozen soil stored for over 500 days, E. coli O157:H7 was viable in 37% of tested samples. In summary, E. coli O157:H7 persisted longer and activity was enhanced with some cover crops in these soils due to plant roots, the presence of clay and freezing.     

Patterns of arbuscular mycorrhiza down the profile of a heavy textured soil do not reflect associated colonization potential

Colonization of roots by arbuscular mycorrhizal (AM) fungi in several annual crops in two consecutive seasons was compared with, in the second season, the density of fungal propagules in the soil with the use of a bioassay. Root density decreased down the soil profile in both years in all crops, and a high proportion of roots were mycorrhizal throughout the profile. AM colonization decreased down the profile in cotton and lablab in the second season only. The bioassay indicated that most propagules of AM fungi in soils under cotton were located near the surface, with virtually no propagules at 1 m. The absence of propagules at depth indicates a lack of mycelium deep in the soil, and suggests that mycorrhizas are primarily initiated in the surface soil and that the fungi colonize the root system mostly through secondary spread down the profile. The use of AM colonization in the field as an indicator of propagule density and symbiotic function should be qualified by an understanding of the depth in the soil from which roots were extracted.     

The volatilization of ammonia from cattle urine applied to soils as influenced by soil properties

The amounts of ammonia volatilized, following the application of cattle urine to 22 soils, were measured in the laboratory during an incubation period of 10 days. The urine contained 12.0 g N dm^-3 and was applied to small columns of soil at a rate equivalent to 26.5 g N m^-2. The soils were from fields of both grassland and arable cultivation and varied widely in properties. Ammonia volatilization ranged from 6.8 to 41.3% of the total urinary N, with a mean value of 26.4%. The soil property most closely related to the extent of volatilization was cation exchange capacity (CEC), and this was so whether all 22 soils were considered together or whether the 14 grassland and 8 arable soils were considered separately. In general, the higher the CEC the less the amount of ammonia volatilized. However, for a given value of CEC, volatilization tended to be greater from a grassland than from an arable soil. The pH of a soil/urine mixture measured after 24 hours was also quite closely correlated with the amount of ammonia volatilized, but the initial pH and titratable acidity of the soil were poorly correlated with ammonia volatilization. ei]H Marschner ei]H Lambers