Determining RuBisCO activation kinetics and other rate and equilibrium constants by simultaneous multiple non-linear regression of a kinetic model

The forward and reverse rate constants involved in carbamylation, activation, carboxylation, and inhibition of D-ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) have been estimated by a new technique of simultaneous non-linear regression of a differential equation kinetic model to multiple experimental data. Parameters predicted by the model fitted to data from purified spinach enzyme in vitro included binding affinity constants for non-substrate CO2 and Mg2+ of 200+/-80 microM and 700+/-200 microM, respectively, as well as a turnover number (k(cat)) of 3.3+/-0.5 s(-1), a Michaelis half-saturation constant for carboxylation (K(M,C)) of 10+/-4 microM and a Michaelis constant for RuBP binding (K(M,RuBP)) of 1.5+/-0.5 microM. These and other constants agree well with previously measured values where they exist. The model is then used to show that slow inactivation of RuBisCO (fallover) in oxygen-free conditions at low concentrations of CO2 and Mg2+ is due to decarbamylation and binding of RuBP to uncarbamylated enzyme. In spite of RuBP binding more tightly to uncarbamylated enzyme than to the activated form, RuBisCO is activated at high concentrations of CO2 and Mg2+. This apparent paradox is resolved by considering activation kinetics and the fact that while RuBP binds tightly but slowly to uncarbamylated enzyme, it binds fast and loosely to activated enzyme. This modelling technique is presented as a new method for determining multiple kinetic data simultaneously from a limited experimental data set. The method can be used to compare the properties of RuBisCO from different species quickly and easily.     

Linearity and Functioning Forms in the Carboxylase Reaction of Spinach Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase

The reaction of spinach RuBisCO activated with CO₂ and Mg²⁺proceeded in two phases, an initial burst for a few minutesand the subsequent linear phase, in the presence of saturatingconcentrations of CO₂, ribulose 1,5-bisphosphate (RuBP), andMg²⁺. The percentage of the activity in the linear phase tothat in the initial burst was 55% with RuBisCO prepared withpolyethylene glycol, and very close to the value with the enzymereleased immediately from isolated chloro-plasts. RuBisCO preparedwith ammonium sulfate had a much larger decrease of the activityin the linear phase. The Euglena enzyme had a linear courseof reaction with time for up to 20 minutes. The K_m for CO₂ of spinach RuBisCO activated beforehand was 20µM in the initial burst, and 28 µM in the linearphase. In the carboxylase reaction initiated with inactive enzyme,the activity was initially negligible, but in 5 minutes increasedto the level observed in the linear phase of the activated enzyme.The K_m for CO₂ in the linear phase of the pre-inactivated enzymewas 70 µM. The concentration of RuBP was the immediate cause of the two-phasiccourse of the carboxylase reaction of spinach RuBisCO. The curvatureof the time course was not observed below 35 µM RuBP.The enzyme required over 88 µM RuBP for the conventionaltwo-phasic course. Further increase of the concentration ofRuBP increased the extent of the curvature, but did not startthe curvature sooner after the start of the reaction. Even ifspinach RuBisCO was in the linear phase, dilution of RuBP orits consumption by the enzymatic reaction to less than 30 µMcaused the enzyme to show the resumed biphasic reaction courseafter addition of a high concentration of RuBP. ¹This paper is the twenty-fourth in a series on PhotosyntheticCarbon Metabolism in Euglena gracilis. (Received September 19, 1988; Accepted November 25, 1988)     

Ribulose bisphosphate-induced, slow conformational changes of spinach ribulose bisphosphate carboxylase cause the two types of inflections in the course of its carboxylase reaction.

The cause of the inflection in the course of the carboxylase reaction and the changes in the functioning form of spinach ribulose bisphosphate carboxylase (RuBisCO) during the reaction were elucidated by relating the activity to the protein conformation of RuBisCO using a fluorescence probe, 2-p-toluidinylnaphthalene sulfonate. The activity of RuBisCO in the linear phase was 50 to 60% of that in the initial burst at 0.5 to 1.0 mM ribulose bisphosphate (RuBP) and 65 to 80% at 2 to 5 mM RuBP. The amount and the progress of the decrease in the activity during the reaction had a close relationship to a change in the protein conformation of RuBisCO. The enzyme, the substrate binding sites of which were masked beforehand with carboxyarabinitol bisphosphate, still showed a change of its protein conformation upon addition of RuBP, suggesting that RuBisCO has two (substrate and regulatory) RuBP-binding sites per RuBisCO promoter. RuBisCO required over 2 mM RuBP for binding on the regulatory sites. Both sites also bound 6-phosphogluconate. When both sites were masked with 6-phosphogluconate beforehand, the course of the subsequent carboxylase reaction was linear with time. From these results, I propose that the inflection in the course of the reaction of spinach RuBisCO is a hysteretic response of the enzyme to RuBP bound to both substrate and regulatory sites.     

Variations in ribulose 1,5-bisphosphate carboxylase protein levels,activities and subcellular distribution during photoautotrophic batch culture of Chlorogloeopsis fritschii

Ribulose 1,5-bisphosphate (RuBP) carboxylase is present in the cytoplasm and carboxysomes (polyhedral bodies) of the cyanobacterium Chlorogloeopsis fritschii. In vitro enzyme activities have been measured throughout photoautotrophic batch culture, together with RuBP carboxylase protein concentrations, determined by rocket immunoelectrophoresis. Enzyme activities and protein levels in the cytoplasmic and carboxysomal fractions varied in an apparently inverse manner during growth. The RuBP carboxylase activities per unit enzyme protein were maximal in late lag phase/early exponential phase for both cellular enzyme pools. Both rates per unit enzyme protein declined during exponential phase, cytoplasmic enzyme activity remaining consistently higher than that of the carboxysomal enzyme. Activities per unit cytoplasmic and carboxysomal enzyme protein showed very low, similar rates in late stationary phase and death phase. Dialysis experiments indicated that such changes were not due to interference in activity assays by soluble endogenous effectors. Major shifts in the subcellular distribution of RuBP carboxylase protein were found versus culture age, enzyme protein levels being predominantly carboxysomal in lag phase, mainly soluble in exponential phase and then mainly carboxysomal again in stationary/death phase. The data are discussed in terms of carboxysome function and the question of control of RuBP carboxylase synthesis in cyanobacteria.Abbreviations RuBP D-ribulose 1,5-bisphosphate - LTIB low Tris isolation buffer - HTIB high Tris isolation buffer - RIE rocket immunoelectrophoresis     

Photosynthesis and Ribulose 1,5-Bisphosphate Concentrations in Intact Leaves of Xanthium strumarium L

The interacting effects of the rate of ribulose 1,5-bisphosphate (RuBP) regeneration and the rate of RuBP utilization as influenced by the amount and activation of RuBP carboxylase on photosynthesis and RuBP concentrations were resolved in experiments which examined the kinetics of the response of photosynthesis and RuBP concentrations after step changes from a rate-saturating to a rate-limiting light intensity in Xanthium strumarium. Because RuBP carboxylase requires several minutes to deactivate in vivo, it was possible to observe the effect of reducing the rate of RuBP regeneration on the RuBP concentration at constant enzyme activation state by sampling very soon after reducing the light intensity. Samples taken over longer time periods showed the effect of changes in enzyme activation at constant RuBP regeneration rate on RuBP concentration and photosynthetic rate. Within 15 s of lowering the light intensity from 1500 to 600 microEinsteins per square meter per second the RuBP concentration in the leaves dropped below the enzyme active site concentration, indicating that RuBP regeneration rate was limiting for photosynthesis. After longer intervals of time, the RuBP concentration in the leaf increased as the RuBP carboxylase assumed a new steady state activation level. No change in the rate of photosynthesis was observed during the interval that RuBP concentration increased. It is concluded that the rate of photosynthesis at the lower light intensity was limited by the rate of RuBP regeneration and that parallel changes in the activation of RuBP carboxylase occurred such that concentrations of RuBP at steady state were not altered by changes in light intensity.     

Isolation of ribulose bisphosphate carboxylase-oxygenase from non-hardened and hardened needles of Pinus sylvestris

Ribulose bisphosphate carboxylase-oxygenase, RuBP carboxylase (EC 4.1.1.39), was purified from non-hardened and hardened needles of Pinus sylvestris L. Needles were collected from pine seedlings cultivated in nutrient solution in a climate chamber from seedlings grown outdoors, and from a tree in a natural stand. The enzyme was isolated from crude extracts through quantitative precipitation in polyethylene glycol 4000 and MgCl₂, followed by sucrose gradient centrifugation in a fixed angle rotor. The purified enzyme seemed homogeneous by the criterion of (sodium dodecylsulphate) polyacrylamide gel electrophoresis. Contamination by nucleic acids was negligible. The RuBP carboxylase protein content of the gradient fractions was estimated as A₂₈₀^{1 cm}× 0.61 mg ml⁻¹. Carboxylase activities were determined in a radioactive assay at 25°C. The specific activity of RuBP carboxylase isolated from non-hardened needles was approximately 1 μmol CO₂ (mg protein)⁻¹ min⁻¹. For enzyme isolated from hardened needles collected during winter the specific activity was somewhat lower due to loss of enzyme activity during the preparation. The described two-step procedure provides a means for quantitation of the RuBP carboxylase protein in pine needles during all seasons.     

Purification, quaternary structure, composition, and properties of D-ribulose-1,5-bisphosphate carboxylase from Thiobacillus intermedius.

D-Ribulose-1,5-bisphosphate (RuBP) carboxylase has been purified from glutamate-CO2-S2O3(2)-grown Thiobacillus intermedius by pelleting the enzyme from the high-speed supernatant and by intermediary crystallization followed by sedimentation into a discontinuous 0.2 to 0.8 M sucrose gradient. The enzyme was homogeneous by the criteria of electrophoresis on polyacrylamide gels of several acrylamide concentrations, sedimentation velocity and equilibrium measurements, and electron microscopic observations of negatively stained preparations. The molecular weights of the enzyme determined by sedimentation equilibrium and light-scattering measurements averaged 462,500 +/- 13,000. The enzyme consisted of closely similar or identical polypeptide chains of a molecular weight of 54,500 +/- 5,450 determined by polyacrylamide gel electrophoresis in the presence of sodium dodecyl sulfate. The S(0)20,w of the enzyme was 18.07S +/- 0.22. Electron microscopic examination suggested that the octomeric enzyme (inferred from the molecular measurements mentioned) had a cubical structure. The specific activity of the enzyme was 2.76 mumol of RuBP-dependent CO2 fixed/min per mg of protein (at pH 8 and 30 C), and the turnover number in terms of moles of CO2 fixed per mole of catalytic site per second was 2.6. The enzyme was stable for 3 months at -20 C and at least 4 weeks at 0 C. The apparent Km for CO2 was 0.75 mM, and Km values for RuBP and Mg2+ were 0.076 and 3.6 mM, respectively. Dialyzed enzyme could be fully reactivated by the addition of 20 mM Mg2+ and partially reactivated by 20 mM Co2+, but Cd2+, Mn2+, Ca2+, and Zn2+ had no effect. The compound 6-phosphogluconate was a linear competitive inhibitor with respect to RuBP when it had been preincubated with enzyme, Mg2+, and HCO3-.     

Ribulose-l,5-bisphosphate carboxylase activity and influence of air pollution in spruce

Methods were established, which render possible a simultaneous determination of ri-bulose-l,5-bisphosphate (RuBP) carboxylase (EC 4.1.1.39) activity and chlorophyll content of Norway spruce (Picea abies Karst.) needles from a detergent-containing aqueous crude extract. Spruce RuBP carboxylase was tentatively characterized with regard to kinetic properties. Recovery experiments employing purified wheat RuBP carboxylase proved quantitative extraction of the enzyme from spruce foliage. Five timber stands consisting of 35–62 years old spruce, two of which exhibited the typical symptoms of recent spruce decline, were compared. For the needle generations 1 to 4 the enzyme activities as well as chlorophyll and protein concentrations were determined. The results do not indicate an involvement of RuBP carboxylase in spruce decline.     

Differences between Wheat Genotypes in Specific Activity of Ribulose-1,5-bisphosphate Carboxylase and the Relationship to Photosynthesis

The in vitro ribulose-1,5-bisphosphate (RuBP) carboxylase activity per unit of leaf nitrogen was found to be 30% greater in Triticum aestivum than in T. monococcum. This was due to a higher specific activity of the enzyme from T. aestivum, as the amount of RuBP carboxylase protein per unit of total leaf nitrogen did not differ between the genotypes. The occurrence of higher specific activity of RuBP carboxylase is shown to correlate with possession of the large subunit derived from the B genome of wheat.

Despite the greater RuBP carboxylase activity per unit of leaf nitrogen in T. aestivum, the initial slopes of curves relating rate of CO₂ assimilation to intercellular p(CO₂) are similar in T. aestivum and T. monococcum for the same nitrogen content per unit leaf area. The similarity of the initial slopes is the result of a greater resistance to CO₂ transfer between the intercellular spaces and the site of carboxylation in T. aestivum than in T. monococcum.

     

A mechanistic model for photosynthesis based on the multisubstrate ordered reaction of ribulose 1,5 bisphosphate carboxylase

Abstract. A mechanistic model of photosynthesis is developed based on the characteristics of ribulose 1,5-bisphosphate (RuBP) carboxylase and the assimilation of CO₂ as an ordered reaction with RuBP binding before CO₂. An equation is derived which considers the effects of light (for regeneration of RuBP) and CO₂. Taking values for the maximum turnover of RuBP carboxylase at substrate saturation, the maximum carboxylation efficiency (maximum increase in rate per increase in CO₂ concentration) and the minimum quantum requirement for the C₃ pathway, photosynthesis in the absence of photorespiration is simulated. In the model, at varying concentrations of CO₂, the efficiency of light utilization approaches a maximum value as photon flux density decreases. Similarly, with a given maximum carboxyation capacity, at varying photon flux densities the carboxylation efficiency approaches a constant maximum value (equal to V _max/ K _{m CO2}) as CO₂ is decreased. However, a decrease in the state of activation of RuBP carboxylase under low light results in a lower carboxylation efficiency. Limits on the rate of photosynthesis, as the maximum capacity for regeneration of RuBP is reduced relative to carboxylation potential, or as the maximum capacity of the carboxylase varies, are considered.     

Activity and properties of ribulose-1,5-bisphosphate carboxylase of sugarbeet plants grown under saline conditions

Activity and properties of sugar beet ( Beta vulgaris var. Polyrave) leaf ribulose-1,5-bisphosphate (RuBP) carboxylase were investigated following the exposure of plants to NaCl in the range of 45 to 270 m M for 7 days. An enhancement in RuBP carboxylase activity was found both in crude extracts and in purified preparations following plant exposure to 180 m M NaCl. Kinetic properties of the enzyme were significantly affected by salinity as determined by a 4.5 fold increase in K_m [HCO^-₃] and K_m [CO₂], and a V_max increase of 50%. Data based on polyacrylamide-gel-electrophoresis suggest that the molecular weight of the small subunit of RuBP carboxylase was reduced from 15,500 to 12,500 in plants grown under salinity. The large subunit was much less affected and no change was found in the whole enzyme. The enzyme isolated from plants exposed to salinity contained about 50% fewer titratable SH groups as compared with the control. The results indicate that in this plant, mild salt concentrations induced conformational changes in RuBP carboxylase which may be responsible for its tolerance to semi-salinity.     

Photosynthetic recovery in the resurrection plant Selaginella lepidophylla after wetting

Summary Photosynthetic recovery (PR) in a southwest Texas, USA population of Selaginella lepidophylla (Hook and Grev.) (Selaginellaceae), a poikilohydric spikemoss, was examined in the laboratory. Infrared CO₂ gas analysis and ribulose 1,5-bisphosphate (RuBP) carboxylase activity measurements indicated that optimal temperature for PR was near 25°C in terms of: (1) rapidity of net CO₂ uptake after hydration (5.4 h), (2) maximum net photosynthetic rate at 2000 E·m^-2·s^-1 (2.44 mg CO₂·g(DWT)^-1·h^-1), and (3) maximum net CO₂ assimilation per 30 h hydration event (43.8 mg CO₂·g(DWT)^-1·30 h^-1). The PR was much slower at both 15° and 35° C, with lower photosynthetic rates and net carbon gains per hydration event. High respiratory costs were incurred at 45°C and no net photosynthesis was observed. Increases in RuBP carboxylase activity and chlorophyll content during 24 h hydration were also greatest near 25°C. Dry plants had 60% of the enzyme activity of fully recovered (24 h hydration) plants, indicating enzyme conservation. Actinomycin D and cycloheximide did not appear to inhibit PR, but chloramphenicol appeared to totally inhibit RuBP carboxylase activity increases over levels conserved in dry plants. Therefore, rapid PR in S. lepidophylla was achieved by both rapid increase in RuBP carboxylase activity, possibly via de novo synthesis, and conservation of the photosynthetic enzyme. Both mechanisms are essential to maximize assimilation in S. lepidophylla in an environment where hydrated periods are rare and of short duration.     

Photoreductive path of carbon fixation in green plant photosynthesis. Reaction pathway of six-carbon ribulose 1,5-bisphosphate carboxylation adduct intermediate

In this paper we examine the six-carbon intermediate pathway of ribulose 1,5-bisphosphate (RuBP) carboxylation reaction in photosynthesis. Based on the observed reactions of purified RuBP carboxylase, mechanisms are described for carbon dioxide assimilation leading to the hydrolytic splitting of the six-carbon intermediate to two enzyme-bound glycerate-3-P (3-PGA) molecules. It is concluded that, under photosynthetic conditions, the reduction of enzyme-bound NADP+ by the chlorophyll is responsible for the rapid carboxylase turnover rate given by the lifetime, tau L = 0.4 s, which is nearly two orders of magnitude shorter than the corresponding value, tau D = 11 +/- 3 s, for the dark decay of enzyme-bound RuBP. The nocturnal inhibition and photoactivation of RuBP carboxylation are described in terms of the reversible light-dark cycles of the NADP+/NADPH redox couple and endogenous changes that accompany the 2-carboxy-D-arabinitol-1-phosphate binding to the enzyme active site.     

Photosynthesis and Activation of Ribulose Bisphosphate Carboxylase in Wheat Seedlings : Regulation by CO(2) and O(2)

Photosynthetic carbon assimilation in plants is regulated by activity of the ribulose 1,5-bisphosphate (RuBP) carboxylase/oxygenase. Although the carboxylase requires CO₂ to activate the enzyme, changes in CO₂ between 100 and 1,400 microliters per liter did not cause changes in activation of the leaf carboxylase in light. With these CO₂ levels and 21% O₂ or 1% or less O₂, the levels of ribulose bisphosphate were high and not limiting for CO₂ fixation. With high leaf ribulose bisphosphate, the K_act(CO₂) of the carboxylase must be lower than in dark, where RuBP is quite low in leaves. When leaves were illuminated in the absence of CO₂ and O₂, activation of the carboxylase dropped to zero while RuBP levels approached the binding site concentration of the carboxylase, probably by forming the inactive enzyme-RuBP complex.

The mechanism for changing activation of the RuBP carboxylase in the light involves not only Mg²⁺ and pH changes in the chloroplast stroma, but also the effects of binding RuBP to the enzyme. In light when RuBP is greater than the binding site concentration of the carboxylase, Mg²⁺ and pH most likely determine the ratio of inactive enzyme-RuBP to active enzyme-CO₂-Mg²⁺-RuBP forms. Higher irradiances favor more optimal Mg²⁺ and pH, with greater activation of the carboxylase and increased photosynthesis.

     

Chemiluminescence of the Mn2(+)-activated ribulose-1,5-bisphosphate oxygenase reaction: evidence for singlet oxygen production

Chemiluminescence has been observed during catalysis by Mn2(+)-activated ribulose-bisphosphate carboxylase/oxygenase from spinach. The luminescence is ribulose 1,5-bisphosphate (RuBP) and O2-dependent and is inhibited by 2-carboxyarabinitol 1,5-bisphosphate and high concentrations of bicarbonate; it is therefore ascribed to the RuBP oxygenase activity. The luminescence is inhibited by azide and enhanced in D2O and in the presence of diazabicyclooctane. The emission maximum is between 620 and 660 nm. The initial rate of light emission is second order in enzyme concentration. The data strongly suggest that singlet oxygen is produced during turnover, that the observed chemiluminescence is due to dimol emission of singlet oxygen, and that this provides a basis for a highly sensitive assay for RuBP oxygenase.     

Role of heparin in erythrocyte aggregation

The effect of two heparin fractions containing 3 (HP-3) and 4 (HP-4) residues of sulfuric acid per dimer of polymers on the capacity of hyaluronate potassium (HUP) and protein-chondroitin-keratan-sulfate potassium (PCHKSP) to aggregate rabbit erythrocytes suspended in 0.15 M NaCl was studied. HP-3 (0.3-5.0 mg X ml-1) and HP-4 (0.3-5.0 mg X ml-1) was inhibited the aggregating action on the erythrocytes of HUP. Fraction HP-3 (0.3-5.0 mg X ml-1) was activated the aggregating action on the erythrocytes of PCHKSP. Fraction HP-4 when the concentration of their biopolymer were 0.3 mg X ml-1 so activated the aggregating action of PCHKSP, but when the concentration HP-4 0.6-5.0 mg X ml-1 was inhibited the aggregating action PCHKSP. The mixture of HP-3 (1.2 mg X ml-1) and HP-4 (1.2 mg X ml-1) was not influenced on aggregating action of PCHKSP.     

An accurate method to quantify ribulose bisphosphate carboxylase content in plant tissue

A method is described to accurately measure the content of ribulose bisphosphate carboxylase (RuBP carboxylase, EC 4·1.1·39) in plant tissues. This procedure, termed the internal standard method, involves extraction of the plant tissue (containing an unknown amount of ¹H‐RuBP carboxylase) in a buffer containing a known amount of previously purified ³H‐RuBP carboxylase (internal standard). The rapid and efficient, single step copurification of ¹H‐ and ³H‐RuBP carboxylases on the Mono Q column of the Fast Protein Liquid Chromatography System (FPLC), or by sucrose density gradient ultracentrifugation, allows the accurate estimation of the purification yield (³H in purified enzyme/³H in the extraction buffer). Knowing the amount of ¹H‐RuBP carboxylase in the purified enzyme and the purification yield, one can calculate the concentration of ¹H‐enzyme present in the plant tissue. This procedure overcomes some of the main constraints associated with the methods described in the literature: it takes into account the enzyme that is lost during the clarification of the protein extracts or during the isolation and purification processes; it is independent of the proteolysis that occurs in vitro by the action of cell proteases; it is not affected by the presence of RuBP carboxylase breakdown products; it is not influenced by any of the factors that control the catalytic activity or the activation state of the enzyme; and, it does not depend on the specificity of antigen‐antibody reactions.     

The effect of magnesium and other ions on the distribution of ribulose 1,5-bisphosphate carboxylase in chloroplast extracts

In an attempt to produce chloroplast extracts containing ribulose 1,5-bisphosphate (RuBP) carboxylase in its fully activated state, MgCl₂ and NaHCO₃ were included in the medium used to osmotically shock chloroplasts. Extracts prepared in this manner contained lower levels of the enzyme than those prepared in the absence of MgCl₂ and NaHCO₃. The difference in enzyme levels was found to be attributable to an association in the presence of Mg²⁺, between RuBP carboxylase and the thylakoids removed from the extract during its preparation. Some monovalent cations caused a similar association, although to a lesser extent. The trivalent cation Tris(ethylenediamine) cobalt(III) was more effective in causing this association, but was highly inhibitory to the enzyme. The results suggest that the attraction between thylakoids and RuBP carboxylase in the presence of certain ions is likely to be electrical in nature. The results are discussed in terms of the media used to isolate RuBP carboxylase.     

Rapid heating of intact leaves reveals initial effects of stromal oxidation on photosynthesis

Heat stress in leaves under natural conditions is characterized by rapid fluctuations in temperature. These fluctuations can be on the order of 10 degrees C in 7 s. By using a specially modified gas-exchange chamber, these conditions were mimicked in the laboratory to analyse the biochemical response to heat spikes. The decline in ribulose 1.5-bisphosphate carboxylase/oxygenase (Rubisco) activity during prolonged heat stress is generally associated with an increase in ribulose 1,5-bisphosphate (RuBP) levels. However, rapid heating caused an initial decline in RuBP which was subsequently followed by a small decline in Rubisco carbamylation. The ratio of RuBP to Rubisco sites declined from a saturating concentration to a sub-saturating concentration, providing a possible mechanism for the decarbamylation of Rubisco. If RuBP is saturating (>1.8 RuBP Rubisco site(-1)), it acts as a cap on the catalytic site and keeps Rubisco activated. Measurements of triose-phosphate levels and NADP-malate dehydrogenase activation (a stromal redox proxy) indicated that the regeneration of RuBP by the Calvin cycle was limited by the availability of redox power.     

Purification and degradation of ribulose bisphosphate carboxylase from soybean leaves

A rapid method is described for the preparation of up to 500 milligrams of pure ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBP carboxylase) from 250 grams of field-grown soybean leaves. Leaves were extracted in 20 millimolar phosphate (pH 6.9) at 4°C, containing 4% (w/v) polyvinylpolypyrrolidone, 10 micromolar leupeptin, 1 millimolar phenylmethyl sulfonylfluoride, 1 millimolar diethyldithiocarbamate, 5 millimolar MgCl₂, 1 millimolar dithiothreitol, 0.2 millimolar ethylene-diaminetetraacetic acid, 50 millimolar 2-mercaptoethanol. The extract was incubated in the presence of 5 millimolar ATP at 58°C for 9 minutes, then centrifuged and concentrated. Sucrose gradient centrifugation into 8 to 28% (w/v) sucrose on a vertical rotor for 2.5 hours yielded pure enzyme with a specific activity of 1.1 to 1.3 micromoles per minute per milligram protein at pH 8.0, 25°C. Soybean plants of the same line grown (at 400 microeinsteins per square meter per second) in growth chambers yielded enzyme with a specific activity of 0.6 to 0.7 micromoles per minute per milligram protein. During prolonged purification procedures a proteolytic degradation of RuBP carboxylase caused complete loss of catalytic activity. Without destroying the quaternary structure of the enzyme, a 3 kilodalton peptide was removed from all large subunits before further breakdown (removal of a 5 kilodalton peptide) occurred. Catalytic competence of the enzyme was abolished with the loss of the first (3 kilodalton) peptide.