Conformations and interactions of pectins: I. X-ray diffraction analyses of sodium pectate in neutral and acidified forms

X-ray diffraction patterns of uniaxially oriented, polycrystalline fibers of neutral sodium pectate can be indexed on the basis of an orthogonal unit cell with dimensions a = 0.84 nm, b = 1.43 nm, c (fiber axis) = 1.34 nm, which contains trisaccharide fragments of two polygalacturonic chains of opposite sense. The polysaccharide chains have 3₁ screw symmetry but are arranged in a lattice that has space group symmetry P2₁ (unique axis b). There are three sodium ions in each crystal asymmetric unit. They are all octahedrally co-ordinated to oxygen atoms of the galacturonan chains or of water molecules. Every oxygen atom is involved also in at least one hydrogen bond. Sodium pectate can be partially converted to pectic acid whose polysaccharide chains preserve the 3₁ pectate conformation, are packed in an orthogonal unit cell also with P2₁ symmetry but with quite different dimensions a = 0.99 nm, b (unique 2₁ axis) = 1.23 nm, c (fiber axis) = 1.33 nm. In this lattice, the polygalacturonic acid chains form corrugated sheets in which alternate molecules have opposite sense and are extensively hydrogen-bonded through their carboxyl groups.     

Crystal structure of the low-dimensional uranium pentatelluride: UTe5

The crystal structure of UTe₅ (a = 17.915(5), b = 10.407(3), c = 4.220(2) Å, Pnma, Pn2₁a, Z =4) was refined from 822 intensities with I>3σ(I) to a conventional R factor of 0.060. The uranium coordination polyhedron is a three capped tellurium trigonal prism, and all the Te atoms are involved in TeTe bonds. The structure is built up with infinite chains of prisms stacked in the $\text{c}$ direction. The chains are linked into (b, c) layers by a single Te atom which exhibits some positional disorder.     

Crystal and molecular structures of substituted α-d-glucopyranosides

The crystal and molecular structures of methyl 2,4,6-tri-O-pivaloyl-α-d-glucopyranoside (1), methyl 4,6-O-(R)-benzylidene-2-O-pivaloyl-α-d-glucopyranoside (2), and methyl 4,6-O-(R)-benzylidene-2,3-di-O-pivaloyl-α-d-glucopyranoside (3) were determined by X-ray analysis. Crystals of 1 are orthorhombic, space group P2₁2₁2₁ with the unit cell a = 13.026(2), b = 16.832, c = 11.929(2) Å, Z = 4. Crystals of 2 are monoclinic, space group P2₁. The unit-cell parameters are a = 6.519(1), b = 14.664(4), c = 10.635(4) Å, β = 93.18(1)°, Z = 2. Crystals of 3 are orthorhombic, space group P2₁2₁2₁ with a = 10.006(3), b = 13.874(3), c = 18.527(5) Å, Z = 4. The structures were solved by MULTAN and refined by a full-matrix procedure to final values of R = 0.084 (1), 0.048 (2), and 0.069 (3). The pyranose ring in each compound adopts the ⁴C₁ conformation. The 1,3-dioxane rings in 2 and 3 show a chair conformation. The molecular packing in 1 is through the hydrogen bonds involving HO-3 and the 6-O-pivaloyl carbonyl group [HO-3 ⋯ O-9, 2.855(8) Å], which connect the molecules into a chain along

. The endocyclic oxygen atom is involved in an intermolecular hydrogen-bond with HO-3 [2.848(4) Å], joining molecules of 2 into the chains along

. There are no free hydroxyl groups in 3 and molecular packing reflects van der Waals interactions only.     

f-Element/crown ether complexes. 26. Crystallization of two hydrated forms of hydrogen bonded complexes of NdCl3·nH2O and 15-crown-5. Crystal structures of [Nd(OH2)9]Cl3·15-crown-5·H2O and [NdCl2(OH2)6]Cl·15-crown-5

When slowly evaporated, the reaction of NdCl₃· nH₂O with 15-crown-5 in a 3:1 mixture of acetonitrile:methanol produces two crystalline hydrates. The decahydrate, [Nd(OH₂)₉]Cl₃·15-crown-5·H₂O, is orthorhombic, P2₁2₁2₁, with (at −150 °C) a = 10.571(4), b = 15.220(7), c = 15.686(7) Å, and D_calc = 1.71 g cm⁻³ for Z = 4. These crystals are stable to the moisture in air. Each Nd is nine-coordinate with tricapped trigonal prismatic geometry. The nine coordinated water molecules are hydrogen bonded to two symmetry related crown ethers, all three chloride ions, and the tenth water molecule. The crown has a total of six hydrogen bonds, four on one side (two to a single oxygen atom) and two on the other. This ether exhibits conformational disorder. The hexahydrate, [NdCl₂(OH₂)₆]Cl·15-crown-5 is deliquescent, dissolving in air and recrystallizing as [NdCl₂(OH₂)₆]Cl. Crystals of this complex are monoclinic, P2₁/n, with (at 20 °C) a = 9.821(3), b = 16.978(9), c = 12.849(8) Å, β = 94.06(5)°, and D_calc = 1.80 g cm⁻³ for Z = 4. The Nd atom exists in a distorted dodecahedral geometry with one chlorine in an A site and one in a B site. The coordinated chlorine atoms accept hydrogen bonds producing polymeric zigzag hydrogen bonded chains along c. The third noncoordinated chloride ion accepts four hydrogen bonds, three from one formula unit and one from a second formula unit related by a unit translation along a. The crown ethers accept five hydrogen bonds, two on one side, and three on the other, thus separating the zigzag chains along b.     

Crystal and molecular structures of cyclomaltoheptaose inclusion complexes with HI and with methanol

β-Cyclodextrin (β-CD; cyclomaltoheptaose; cyclohepta-amylose; C₄₂H₇₀O₃₅) crystallises from aqueous solutions of HI and of MeOH in the form of stout prisms, which are isomorphous to each other with monoclinic space-group P2₁; cell constants for C₄₂H₇₀O₃₅ · 2HI · 8 H₂O: a = 21.25(3), b = 10.28(2), c = 15.30(2) Å, β = 113.25(9)°, and Z = 2; and for C₄₂H₇₀O₃₅ · MeOH · 6.5 H₂O: a = 21.03(3), b = 10.11(2), c = 15.33(2) Å, β = 111.02(9)°, and Z = 2. X-ray counter data were used to determine the structures of both crystals, which belong to the cage type, with β-CD molecules in nearly identical, “round” shapes. In the HI complex, one I^- is located inside, and one outside, the β-CD cavity; in the MeOH complex, the MeOH is within the cavity. The cavity is closed at the O-2,O-3 side by adjacent β-CD molecules, and at the O-6 side by water molecules hydrogen-bonded to the guest and to surrounding β-CD molecules. Interstices between β-CD molecules are filled by water of hydration molecules in distorted co-ordination.     

Crystal structure of trisodium β-d-fructofuranose 1,6-diphosphate octahydrate

Trisodium β-d-fructose 1,6-diphosphate octahydrate crystallises in the monoclinic space group P2₁ with unit-cell dimensions a = 13.289(2), b = 11.643(3), c = 7.092(1) Å, and β = 102.32(2)°. The unit cell contains two symmetry-related molecules. The structure has been determined by direct methods, and refined to an R value of 0.035 and an R_w value of 0.049. The puckering of the furanose ring is C-3-exo, corresponding to an E₃ conformation slightly distorted towards ⁴T₃. The sodium atoms are hexaco-ordinated. The crystal packing involves alternating charged layers and a network of hydrogen bonds which links the molecules belonging to the same layer and to adjacent layers.     

The crystal structures of four models for the binding to DNA of cisplatinum derivatives containing a bidentate tertiary diamine

The compounds cis-[(TMED)Pt(9-MeG)₂](PF₆)₂· 2H₂O (1), cis-[(TMED)Pt(9-EtG)₂](ClO₄)₂·2H₂O(2). cis-[(TMED)Pt(DMX)₂](PF₆)₂·4H₂O (3) and cis-[(TMED)Pt(TMX)₂](PF₆)₂·xH₂O (x ≈ 4) (4), where TMED = N,N,N′,N′-tetramethylethylenediamine, 9-MeG = 9-methylguanine, 9-EtG = 9-ethylguanine, DMX = 1,3-dimethylxanthine and TMX = 1,3,9-trimethylxanthine, have been prepared and structurally characterized by X-ray methods. Compound 1 crystallises in space group Pn, with a = 10.675(1), b = 12.970(1), c = 12.016(1) Å, β = 97.05(1)°, Z = 2. Compound 2 crystallizes in space group Pbca, with a = 13.886(1), b = 31.742(4), c = 14.958(2) Å, Z = 8. Compound 3 crystallizes in space group C2/c, with a = 37.557(4), b = 12.215(2), c = 15.823(3) Å, β = 90.47(1)°, Z = 8. Compound 4 cyrstallises in the space group C2/c, with a = 38.516(5), b = 12.078(2), c = 16.219(2) Å, β = 97.88(1)°, Z = 8. Compounds 3 and 4 are structurally similar. Each [(TMED)Pt(Base)₂]²⁺ cation shows square-planar coordination to Pt with the two independent purine ligands coordinated through N7 and arranged in a head-to-tail conformation. The structures are compared with each other and with related compounds in terms of their base/base and base/coordination plane dihedral angles, and their different crystalline environments.     

Steady-state kinetics of electron transfer through cytochrome chain of uncoupled submitochondrial particles. II. Influence of pH on kinetics of electron transfer

pH Dependences of steady-state kinetic parameters of cytochrome chains of submitochondrial particles have been studied. It has been shown that the lifetimes of activated states (τ) of the pairs of cytochromes b → c₁ and a → a₃ have different pH dependences; those for the c₁ → c and c → a cytochrome pairs being similar. The rate constants for the non-activated state of the respiratory chains decreased for the b → c₁ pair and increased for the a → a₃ pair when the pH value was increased.The values of pK calculated from these dependences for the pairs b → c₁ and a → a₃ were 7.2 and 8.9, respectively. It has been supposed that the ratio of activated to non-activated electron carriers may be controlled by the local pH value in the mitochondrial membrane, the latter being dependent upon the rate of electron transfer. The kinetic model based on this assumption allows one to explain the experimental dependences on pH of the rate constants for cytochromes b → c, and a → a₃.The values of the diffusion rate constants for H⁺ and OH^? ions in the mitochondrial membrane estimated from these kinetic data obtained in this study weree 10⁴–10⁵ s^?1 and 10²–10³ s^?1, respectively.     

Uranyl complexes of acetamidoxime and benzamidoxime. Preparation,characterization, and crystal structure

The uranyl complexes [UO₂(acetamidoxime)₄](NO₃)₂ (1) and [UO₂(benzamidoxime)₄](NO)₃)₂·χS (S = nitromethane or 1,2-dichloroethane, χ < 1) (2) were prepared by the reaction of uranyl nitrate with the corresponding amidoxime in ethanolic solution, and characterized by thermal analysis and infrared spectroscopy. The crystal structures of the acetamidoxime complex and the 1,2-dichloroethane-containing benzamidoxime complex (2a) were determined by single crystal X-ray diffraction measurements and refined R₁ = 0.018 and 0.070, respectively. 1 crystallizes in the monoclinic space group I2/c with a = 14.929(3), b = 8.946(2), c = 16.790(4) Å, β = 96.01(2)° and Z = 4, whereas crystals of 2a are triclinic, space group P $\text{1}$ with a = 9.890(4), b = 14.226(6), c = 15.227(6) Å, α = 75.76(3), β = 87.13(3), γ = 81.22(3)° and Z = 2. In both complexes the linear uranyl group is equatorially surrounded by four oxygen atoms of monodentate amidoxime ligands, the mean bond lengths in 1 and 2a being: UO_uranyl = 1.775 and 1.78 Å and UO_amidoxime = 2.308 and 2.26 Å, respectively. In accordance with infrared spectroscopic results the nitrate ions are not coordinated to uranium, but interact with the ligand molecules via hydrogen bonds.     

Purification and structural properties of the precursors of the globin messenger RNAs

X-ray diffraction data have been obtained from sodium and calcium salts of a proteoglycan rich in chondroitin 4-sulfate isolated from the Swarm rat chondrosarcoma. When sodium is the only countercation associated with the proteoglycan, the oriented polysaccharide chains adopt a 3-fold helical conformation in the solid state and pack in a trigonal unit cell with dimensions a = b = 1.45 nm and c = 2.88 nm. Addition of small amounts of calcium or full conversion of the polyanion from a sodium to a calcium salt form results in a conformational transition to a somewhat more extended 2-fold structure.For the calcium salt X-ray intensity data were used to refine the polysaccharide conformation and packing arrangement in the unit cell. Two antiparallel chains were found to crystallize in an orthorhombic unit cell with space group P22₁2₁ and dimensions a = 0.745 nm, b = 1.781 nm and c = 1.964 nm. The individual helix axes intersect the base plane of the unit cell at (x_f = 0, y_f = 0) and ($\text{x}{}_{\mathrm{f}}\text{= 0, y}{}_{\mathrm{f}}\text{=}\text{1}\text{2}$), and the polyanions are crystallographically equivalent, being related by the symmetry of the space group.The conformation of chondroitin 4-sulfate is stabilized intramolecularly by O.3 … O.5 hydrogen bonds across the β(1 → 4) linkage as well as by OSO^?₃ … Ca²⁺ … ^?OOC co-ordination across the β(1 → 3) linkage. Within the lattice adjacent parallel chains interact through COO^? … Ca²⁺ … ^?OOC bridges, and each calcium co-ordination shell is completed with an additional five water molecules to form a distorted, square antiprism. These water molecules are hydrogen-bonded to neighboring polyanions, and all intermolecular interactions involve water bridges or calcium ion co-ordination.On the basis of the refined packing model and the known structural features of the proteoglycan, models are considered for proteoglycan organization in connective tissue. Consideration of the conformational directing influence and relative abundance of calcium in the intercellular matrix suggest that the secondary structure of chondroitin 4-sulfate in vivo is likely to be similar to the conformation described in this study.     

f-element/crown ether complexes. 6. Interaction of hydrated lanthanide chlorides with 15-crown-5: Crystallization and structures of [M(OH2)8]Cl3·(15-crown-5) (M = Gd,Lu)

The interaction of hydrated chloride salts of Gd³⁺ and Lu³⁺ with 15-crown-5 in a 1:3 mixture of CH₃OH:CH₃CN produces crystalline [M(OH₂)₈]Cl₃· (15-crown-5) (M = Gd, Lu). The crystal and molecular structures of both complexes have been determined by single crystal X-ray diffraction. Both are isostructural with previously determined Y analog and crystallize in the monoclinic space group P2₁/n with Z = 4. Lattice parameters are a = 9.247(4), b = 17.312(5), c = 15.191(6) Å, β = 92.19(3)°, D_calc = 1.72 g cm⁻³ for M = Gd and a = 9.150(1), b = 17.171(1), c = 15.217(1) Å, β = 92.64(1)°, D_calc = 1.80 g cm⁻³ for M = Lu. Each complex was refined by least-squares to final conventional R values of 0.052 (M = Gd, 2932 observed [F_o⩾5σ(F_o) reflections) and 0.036 (M = Lu, 3313 observed reflections). The octaaquo M(III) ions exist as a distorted dodecahedron with average MOH₂ separations of 2.41(4) Å (M = Gd) and 2.35(4) Å (M = Lu). The crown ether molecule is hydrogen bonded to metal coordinated water molecules to form polymeric chains along b. The remaining water molecule hydrogen atoms participate in hydrogen bonds with the chloride ions essentially in the ac plane. Two resolvable disordered crown ether conformations are observed with occupancies of 60%/40% (M = Gd) and 75%/25% (M = Lu).     

Crystal and molecular structure of the amylose–DMSO complex

The crystal and molecular structure of the complex of amylose with dimethyl sulfoxide has been studied by a combination of stereochemical analysis, potential energy, and X-ray diffraction methods. The complex crystallizes in a pseudotetragonal unit cell with a = b = 19.17 Å and c (fiber axis) = 24.39 Å, with two antiparallel chains per unit cell and space group P2₁2₁2₁. The amylose chain is a left-handed 6₁(1.355) helix with three turns per crystallographic repeat. The O(6) rotational position is approximately gt. Dimethyl sulfoxide is located inside the helix with one DMSO molecule for every three glucose residues. An additional four DMSO molecules and eight water molecules each are located in the large interstices between chains, and it is the interaction of these molecules with the helix that results in the pseudotetragonal chain packing. The interstitial DMSO is the source of the previously reported additional layer lines, which are not consistent with the 8.13-Å amylose repeat distance. The final R factor for the layers with amylose contribution to the structure factors was 0.29, while the overall R factor was 0.35. The stereochemical packing analysis provided suitable phasing models for the subsequent X-ray refinement.     

Preparation and crystal structure of bis(acetato)(trans-1,2-diaminocyclohexane)platinum(II)

The structure of the complex [Pt(trans-1,2-di- aminocyclohexane) (acetate)₂]·H₂O has been determined by X-ray diffraction. This racemic compound is orthorhombic, space group Aba2, a = 20.813(9), b = 7.926(5), c = 17.296(8) Å, Z = 8. The structure was refined on 1214 nonzero Cu Kα reflections to R = 0.028. The square planar environment of Pt includes the amino groups of the diamine in cis positions and oxygens from two monodentate acetates. The PtN and PtO distances average 2.00(3) and 2.02(3) Å, respectively. The bite of the diamine ligand imposes a NPtN angle of 85(1)°, whereas the small OPtO angle of 85(1)° probably results from packing effects. The average plane through the puckered cyclohexyl ring makes an angle of 19° with the PtN₂O₂ plane. The molecules are stacked by pairs along the b axis. The two molecules of each pair are 180° apart about the stacking axis, and form altogether four NH···O hydrogen bonds.     

Synthesis and characterization of three geometric isomers of ruthenium(2,2-bipyridyl)(salicylaldehyde)2

A new synthesis of Ru^II(bpy)(sal)₂ (1) (bpy=2,2^′-bipyridyl, sal=salicylaldehyde) has been developed and the separation and characterization of all three geometric isomers have been completed. The isomers are denoted 1a (phenolic oxygens trans), 1b, (aldehyde oxygens trans), and 1c (aldehyde oxygen trans to phenolic oxygen). All three isomers have been characterized by ¹H NMR, high resolution FAB-MS, UV-Vis, and cyclic voltammetry. Additionally, 1a has been characterized by solid-state UV-Vis and a single-crystal X-ray structural study. The solid-state packing of the Ru^II(bpy)(sal)₂ molecules in the structure of 1a displays intermolecular π-π interactions between bpy ligands of adjacent molecules. The bpy interactions form infinite π-stacks with alternating short stacking distances of 3.437 and 3.402 Å.     

Syntheses,structures and ligand dissociation kinetics of Vitamin B12 model compounds with exceptionally poor electron donating groups,LCo(DH)2CHX2 (X = Cl or Br)

The syntheses and ligand dissociation kinetics of vitamin B₁₂ model compounds LCo(DH)₂CHX₂ with X = Cl and Br and L = different neutral N- and P- ligands are reported together with the crystal structures of the CHCl₂ derivatives with L = py (1) and 1,5,6-trimethylbenzimidazole, Me₃Bzm (2). Compound 1 crystallizes in the space group P2₁/n with cell parameters a = 9.617(1), b = 12.601(2), c = 15.586(2) Å, β = 95.44(1)°; 2 crystallizes in the space group P1 with cell parameters a = 8.867(2), b = 10.719(2), c = 13.345(2) Å, α = 94.81(2), β = 90.89(1), γ = 105.63(2)°. The two structures were solved by Patterson and Fourier methods and refined by least-squares methods to final R values of 0.037 (1) and 0.036 (2), using 3474 (1) and 4435 (2) independent reflections.The axial NCoC fragment is characterized by CoN and CoC distances of 2.045(2) and 1.995(2) Å in 1 and 2.043(2) and 1.983(2) Å in 2, respectively. The CoC bond lengths have the smallest values so far reported in both py and Me₃Bzm alkylcobaloximes.The displacement of the L ligand followed SN1 LIM behaviour and the corresponding rate constants depend upon the nature of L and vary in CHCl₂ derivatives from 2.42 X 10⁻¹ s⁻¹ for 2-aminopyridine to 1.99 X 10⁻⁵ s⁻¹ for P(OMe)₃. For fewer CHBr₂ analogs the rate constants were smaller.Kinetic results confirm previous findings that the donating ability of CHBr₂ is less than that of CHCl₂, although the electronegativity of Cl and Br species would suggest an opposite trend. Some relationships between kinetic and structural properties are discussed.     

Crystal structures of α- and β-(1,10-phenanthroline)tetrahydroborato(triphenylphosphine)copper(I) and (2,9-dimethyl-4,7-diphenyl-1,10-phenanthroline)tetrahydroboratocopper(I)

Copper(I) is five coordinate in (1,10-phenanthroline)tetrahydroborato(triphenylphosphine)copper(I). This compound crystallizes from either toluene as the yellow, α-form, a = 16.247(8), b = 9.750(7), c = 9.322(5) Å, α = 62.92(4), β = 84.77(4), γ = 84.34(5)°, triclinic P$\text{1}$, Z = 2, or from a xylene/methylene chloride mixture as the red β-form, X-ray cell, a = 13.675(11), b = 10.115(8), c = 9.700(7) Å, α = 95.22(6), β = 96.22(6), γ = 101.02(6)°; neutron cell, as the tetradeuteroborate, a = 13.703(1), b = 10.096(8), c = 9.74(1) Å, α = 95.23(9), β = 96.51(8), γ = 101.04(2)°, triclinic, P$\text{1}$, Z = 2. For both forms, unidentate triphenylphosphine, bidentate 1,10-phenanthroline and unsymmetrical bidentate BH₄^? completes the copper(I) coordination but there are subtle differences between the two. When the ligand 2,9-dimethyl-4,7-diphenyl-1,10-phenanthroline, dmdp, replaces 1,10-phenanthroline, the compound obtained is four coordinate with no tpp in the crystal. [C(dmdp)BH₄] is monoclinic, Cc, a = 14.522(4), b = 20.07(2), c = 7.718(2) Å, β = 106.17(2)°, Z = 4.     

Binuclear copper(II) complexes of tetradentate (Ne) diazine ligands. Crystal structures of [μ-1,4-Bis(4,6-dimethyl-2-pyridylamino)phthalazine-N,μ-N3,μN3,N]-(μ-Dichloro)dichlorodicopper(II), [μ-3,6-Bis(2-pyridylthio)pyridazine-N,μ-N1,μ-N2,N] (μ-dichloro)dichlorodicopper(II) ethanol,and 3,6-Bis(2-pyridylthio)-pyridazine

The X-ray structures of two binuclear copper(II) chloride complexes of the tetradentate ligands 1,4- bis(4,6-dimethyl-2-pyridylamino)phthalazine (PAP46Me) and 3,6-bis(2-pyridylthio)pyridazine are reported. [Cu₂(PAP46Me)Cl₄] (1) and [Cu₂(PTP)Cl₄]· CH₃CH₂OH (2) contain triply bridged binuclear centres involving a diazine (NN) and two chlorobridges with copper-copper separations in the fange 3.19–3.25 Å and distorted square pyramidal copper stereochemistry. The reduced room temperature magnetic moments indicate antiferromagnetically coupled binuclear copper(II) centres.Complex 1 forms green crystals with a= 15.795(3), b=10.661(3), c=16.155(4) Å, β= 113.82(3)°, C2/c, Z = 4, R_f=0.031. Complex (2) forms green crystals with a=33.9022(8), b= 9.1626(5), c= 15.7885(5) Å,β= 114.853(2)°, C2/c, Z=8, R_f=0.047. The structure of the ligand PTP is also reported and compared with that of 2.     

Metal complexes of polycyclic tertiary amines. Part VII. Preparation and crystal structure determination of polymeric hexamethylenetetramine—mercury(II) thiocyanate (12), (CH2)6N4·2Hg(SCN)2

A 1:2 complex of hexamethylenetetramine with mercury(II) thiocyanate, (CH₂)₆N₄·2Hg(SCN)₂, was prepared and shown by X-ray crystallography to be polymeric. The mixed-ligand complex crystallizes in the space group P2₁/m, with a = 6.059(2), b = 19.710(5), c = 7.895(2) Å, β = 105.63(2)°, and Z = 2. The structure was refined to R_F = 0.060 for 1634 observed MoKα diffractometer data. Mercury(II) atoms in a row are linked pairwise by two thiocyanato groups in an end-to-end bridging mode, to give an infinite chain running in the a direction. Two neighboring chains are further laterally connected, successively by bidentate organic ligands which lie on a crystallographic mirror plane. The coordination geometry about Hg(II) is distorted tetragonal pyramidal, the metal atom binding strongly to two S atoms and a tertiary amino N atom (apex), and weakly to two thiocyanato N atoms.     

The preparation and crystal structure analysis of a 2:1 complex between L-lysine and copper(II) chloride

The crystal structure of bis(L-lysine)Cu(II) chloride dihydrate has been determined by X-ray analysis. The complex crystallizes in the monoclinic space group P2₁, with cell dimensions a = 5.189(1), b = 16.988(3), c = 11.482(2) Å, β = 93.57(1)°. The position of the Cu atom was found from a Patterson synthesis, the remaining atoms were located with DIRDIF. The structure was refined by least-squares to R = 0.060 and R_w = 0.065 for 2637 observed reflections. The copper(II) atom has an essentially square planar coordination with the two lysine molecules chelated via the carboxy oxygen and the α-amino nitrogen. However the two chlorine atoms form weak interactions with the metal to complete a strongly tetragonally elongated six-fold coordination. The two aliphatic chains have rather different geometries and are extended in a zig-zag mode. Extensive hydrogen bonding links the complex and the water molecules together.     

Crystal structures of three thiourea (tu) complexes of Pt(II): trans-[(tu)2Pt(NH3)2]Cl2, trans-[(tu)2Pt(CH3NH2)2]Cl2·3H2O and [Pt(tu)4]Cl2

The structures of three Pt(II) thiourea complexes, trans-[(tu)₂Pt(NH₃)₂]Cl₂ (1), trans-[(tu)₂Pt(CH₃NH₂)₂]Cl₂·3H₂O (2) and [Pt(tu)₄]Cl₂ (3), have been determined by X-ray diffraction and refined to R = 0.049 for 1026 reflections (1), R = 0.057 for 2547 reflections (2) and R = 0.046 for 2792 reflections (3). All the compounds crystallize in the space group P2₁/c and have cell dimensions: a = 5.437(1), b = 6.450(1), c = 17.980(3) Å, β = 96.05(2)°, Z = 2 (compound 1); a = 9.225(1), b = 15.404(2), c = 12.601(2) Å, β = 105.39(2)°, Z = 4 (compound 2); and a = 9.051(6), b = 10.203(6), c = 18.263(8) Å, β = 91.12(8)°, Z = 4 (compound 3). The unit cell of 1 and 3 contains only a single type of cation, while that of 2 is formed from two independent cations. In 1 and 2 the coordination spheres of the Pt atoms are rather similar, with angles close to 90° and coplanarity of the metal and respective donor atoms. Instead, in 3 the four sulfur atoms, which surround the Pt, display a slight distortion (0.06 Å from the mean plane) towards tetrahedral.