Do wooded streets provide connectivity for bats in an urban landscape?

The effects of urbanization on bats are poorly understood, but published data suggests it might be detrimental to them. Even though urban parks provide refuge to native biota, the nature of the urban landscape exacerbates the insularization process. In order to evaluate if wooded streets in an urban landscape provide connectivity for bats, we compared bat community structure in three different types of habitats: urban parks, wooded streets and non-wooded streets. Sampling occurred monthly from August 2006 to July 2007 in the city of Vitória, southeastern Brazil. Richness, relative abundance and diversity were higher in urban parks and lower in non-wooded streets. Jaccard’s similarity index showed that the wooded streets are more similar to non-wooded streets than to urban parks. Urbanization may benefit generalist species by providing new resources, but for specialist species critical resources may be lost and persistence endangered. There is evidence that wooded streets may provide some degree of connectivity for birds in urban landscapes, but our results suggest that this is not the case, with wooded streets being used by few individuals of a few species. Vegetation cover is important to maintain bat diversity in urban centers. Activities like landscape planning and gardening should include biodiversity data in their outputs in order to better design a landscape that improves the likelihood of persistence of bats.     

Functional connectivity in replicated urban landscapes in the land snail (Cornu aspersum)

Urban areas are highly fragmented and thereby exert strong constraints on individual dispersal. Despite this, some species manage to persist in urban areas, such as the garden snail, Cornu aspersum, which is common in cityscapes despite its low mobility. Using landscape genetic approaches, we combined study area replication and multiscale analysis to determine how landscape composition, configuration and connectivity influence snail dispersal across urban areas. At the overall landscape scale, areas with a high percentage of roads decreased genetic differentiation between populations. At the population scale, genetic differentiation was positively linked with building surface, the proportion of borders where wooded patches and roads appeared side by side and the proportion of borders combining wooded patches and other impervious areas. Analyses based on pairwise genetic distances validated the isolation‐by‐distance and isolation‐by‐resistance models for this land snail, with an equal fit to least‐cost paths and circuit‐theory‐based models. Each of the 12 landscapes analysed separately yielded specific relations to environmental features, whereas analyses integrating all replicates highlighted general common effects. Our results suggest that urban transport infrastructures facilitate passive snail dispersal. At a local scale, corresponding to active dispersal, unfavourable habitats (wooded and impervious areas) isolate populations. This work upholds the use of replicated landscapes to increase the generalizability of landscape genetics results and shows how multiscale analyses provide insight into scale‐dependent processes.     

Predicting food‐web structure with metacommunity models

Synthesis Metacommunity theory aims to elucidate the relative influence of local and regional‐scale processes in generating diversity patterns across the landscape. Metacommunity research has focused largely on assemblages of competing organisms within a single trophic level. Here, we test the ability of metacommunity models to predict the network structure of the aquatic food web found in the leaves of the northern pitcher plant Sarracenia purpurea. The species‐sorting and patch‐dynamics models most accurately reproduced nine food web properties, suggesting that local‐scale interactions play an important role in structuring Sarracenia food webs. Our approach can be applied to any well‐resolved food web for which data are available from multiple locations. The metacommunity framework explores the relative influence of local and regional‐scale processes in generating diversity patterns across the landscape. Metacommunity models and empirical studies have focused mostly on assemblages of competing organisms within a single trophic level. Studies of multi‐trophic metacommunities are predominantly restricted to simplified trophic motifs and rarely consider entire food webs. We tested the ability of the patch‐dynamics, species‐sorting, mass‐effects, and neutral metacommunity models, as well as three hybrid models, to reproduce empirical patterns of food web structure and composition in the complex aquatic food web found in the northern pitcher plant Sarracenia purpurea. We used empirical data to determine regional species pools and estimate dispersal probabilities, simulated local food‐web dynamics, dispersed species from regional pools into local food webs at rates based on the assumptions of each metacommunity model, and tested their relative fits to empirical data on food‐web structure. The species‐sorting and patch‐dynamics models most accurately reproduced nine food web properties, suggesting that local‐scale interactions were important in structuring Sarracenia food webs. However, differences in dispersal abilities were also important in models that accurately reproduced empirical food web properties. Although the models were tested using pitcher‐plant food webs, the approach we have developed can be applied to any well‐resolved food web for which data are available from multiple locations.     

The current distribution and potential for future range expansion of feral ferret Mustela putorius furo in Ireland

Predicting the potential invaded range of a non-native species is an important tool for conservation biology. The ferret (Mustela putorius furo) is a known invasive species outside its native range and has recently been confirmed as a feral species in Ireland. To determine the current distribution of feral populations, an all-island survey was conducted during 2006–2008. Using the results of this survey, a landscape modelling approach, using presence-only data was applied to predict the potential future range of this species in Ireland, given the availability of suitable habitat. The results suggest that Ireland appears to be potentially highly suitable for ferrets and, therefore, the possible ecological impacts of this species in Ireland are discussed.     

First Passage Time Analysis of Animal Movement and Insights into the Functional Response

Movement plays a role in structuring the interactions between individuals, their environment, and other species. Although movement models coupled with empirical data are widely used to study animal distribution, they have seldom been used to study search time. This paper proposes first passage time as a novel approach for understanding the effect of the landscape on animal movement and search time. In the context of animal movement, first passage time is the time taken for an animal to reach a specified site for the first time. We synthesize current first passage time theory and derive a general first passage time equation for animal movement. This equation is related to the Fokker–Planck equation, which is used to describe the distribution of animals in the landscape. We illustrate the first passage time method by analyzing the effect of territorial behavior on the time required for a red fox to locate prey throughout its home range. Using first passage time to compute search times, we consider the effect of two different searching modes on a functional response. We show that random searching leads to a Holling type III functional response. First passage time analysis provides a new tool for studying how animal movement may influence ecological processes.     

Fungi on Scottish Bryophytes

Summary

The long-standing debate of whether the Romans faced a wooded landscape when they invaded northern Britain is reassessed in light of new palynological evidence in the Hadrianic-Antonine frontier zone. The radiocarbon-dated pollen diagrams suggest that, except for at Fozy Moss, Northumbria, substantial woodland clearance was already underway prior to the Roman invasion of the area. It is evident that there was considerable spatial and temporal variability in the vegetation cover during the period under consideration.     

Countryside vegetation provides supplementary habitat at the landscape scale for woodland birds in farm mosaics

Agricultural environments have a critical role in the global conservation of biodiversity, but the persistence of forest and woodland-dependent species in these systems is often limited by insufficient habitat. Modified or semi-natural ‘countryside’ (matrix) vegetation is used by many species, but its value at the landscape scale is rarely tested. Do such habitats simply provide additional resources for populations sustained by remnant native vegetation in the landscape, or can they enhance populations over and above that sustained by natural vegetation cover? We surveyed woodland-dependent birds in all types of landscape element in 27 farmland mosaics (100 ha each) in south-eastern Australia. Four measures of wooded vegetation cover were quantified: native vegetation only; and combinations of native vegetation plus scattered trees and/or tree plantations. We used an information-theoretic approach to compare the responses of 30 species to each measure of vegetation cover. Woodland birds were well represented in agricultural mosaics (65% of the regional species-pool); however, almost half were recorded only in mosaics with >20% native vegetation cover. The incidence of 23 species was positively related to measures of wooded cover, indicating increased occurrence in mosaics with a greater cover of wooded vegetation. For 12 species, scattered trees and plantations provided supplementary habitat that enhanced their population status at the landscape scale, beyond that sustained by native vegetation cover. While native vegetation has a critical role for conservation in agricultural environments, careful management of wooded countryside elements (such as scattered trees, tree plantations) offers additional benefits to the woodland-dependent avifauna.     

Factors Affecting Golden-Cheeked Warbler Nest Survival in Urban and Rural Landscapes

ABSTRACT We evaluated hypotheses concerning temporal, landscape, and habitat effects on nest survival of golden-cheeked warblers (Dendroica chrysoparia) in an urban and a rural landscape during the breeding seasons of 2005 and 2006 in central Texas, USA. We found support for temporal effects of year and cubic effect of date and included them in candidate models that evaluated habitat and landscape effects. Nest survival was lower in 2006 than in 2005 and decreased nonlinearly as the breeding season progressed. We found support for edge effects with decreased nest survival nearer edges and in areas with increased open edge density (wooded habitat abutting open habitat) or decreased trail density. However, confidence intervals for the model-averaged odds ratios overlapped 1.0 for all edge variables. Overall daily survival rate was 0.964 (95% CI = 0.949-0.975), resulting in a 25-day period survival of 0.398 (95% CI = 0.269-0.524). Period survival in Austin's urban landscape (0.399, 95% CI = 0.270-0.526) was similar to survival in Fort Hood's rural landscape (0.396, 95% CI = 0.261-0.528). Both landscapes likely support self-sustaining populations based on reasonable assumptions for adult survival and number of nesting attempts. We suggest that some large urban preserves can provide breeding habitat of comparable quality to rural locations and recommend protecting large parcels (>100 ha) of breeding habitat with limited fragmentation and reducing the amount of wooded edge abutting open habitat to ensure nest survival regardless of their landscape context.     

Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach

Changes in agricultural practices and forest fragmentation can have a dramatic effect on landscape connectivity and the dispersal of animals, potentially reducing gene flow within populations. In this study, we assessed the influence of woodland connectivity on gene flow in a traditionally forest-dwelling species--the European roe deer--in a fragmented landscape. From a sample of 648 roe deer spatially referenced within a study area of 55 x 40 km, interindividual genetic distances were calculated from genotypes at 12 polymorphic microsatellite loci. We calculated two geographical distances between each pair of individuals: the Euclidean distance (straight line) and the 'least cost distance' (the trajectory that maximizes the use of wooded corridors). We tested the correlation between genetic pairwise distances and the two types of geographical pairwise distance using Mantel tests. The correlation was better using the least cost distance, which takes into account the distribution of wooded patches, especially for females (the correlation was stronger but not significant for males). These results suggest that in a fragmented woodland area roe deer dispersal is strongly linked to wooded structures and hence that gene flow within the roe deer population is influenced by the connectivity of the landscape.     

Holocene persistence of wooded steppe in the Great Hungarian Plain

Aim We used a combination of new and previously published palaeoecological data to test three hypotheses: (1) that wooded steppe persisted in the Great Hungarian Plain throughout the Holocene; (2) that wooded steppe and steppe were most extensive between c. 9900 and 8300 cal. yr bp (the ‘Boreal steppe’ period); and (3) that Southern Continental, Pontic and Eastern Sub‐Mediterranean steppe species reached the region during the early Holocene via the ‘Lower Danube Corridor’. Location Sarló‐hát oxbow lake, Hungary and the Eastern European wooded steppe zone. Methods Holocene sediments deposited in the Sarló‐hát oxbow lake were subjected to pollen and microcharcoal analyses. Twelve radiocarbon age estimates were obtained to determine sediment chronology. In addition, previously published palaeoecological data from the Great Hungarian Plain were compiled, analysed and compared with previous studies in other regions of steppe and wooded steppe in eastern Europe. Results Palynological data from two sediment cores extending to c. 11,400 cal. yr bp indicate the persistent dominance of the landscape by temperate deciduous wooded steppe throughout the Holocene, although with varying canopy composition. Warm‐continental steppe grasslands and saline tall‐grass meadows developed on edaphically constrained areas, which remained steppe‐dominated throughout the Holocene. The extent of steppe grasslands did not increase between 9900 and 8300 cal. yr bp . After c. 3100 cal. yr bp , anthropogenic activities led to the development of cultural steppe. Thermophilous steppe species of the Southern Continental, Pontic and Sub‐Mediterranean floristic elements probably reached the Great Hungarian Plain principally via the Lower Danube Corridor during the late glacial interstadial and Holocene. Eurythermic members of these elements, however, probably survived the Last Glacial Maximum in favourable microsites, extending their ranges during the Holocene from these local sources. Main conclusions Our results confirm the Holocene persistence of wooded steppe in the Great Hungarian Plain, disprove the ‘Boreal steppe’ theory, and suggest an Early Holocene period of greater vegetation openness between 11,400 and 9900 cal. yr bp . Evidence for the post‐glacial immigration of south‐eastern steppe elements into the Carpathian Basin is equivocal: the last glacial/interglacial presence of several southern steppe species suggests that the Hungarian Plain hosted suitable habitats for them during warm and cold phases alike.     

Quantifying cell transitions in C. elegans with data-fitted landscape models

Increasing interest has emerged in new mathematical approaches that simplify the study of complex differentiation processes by formalizing Waddington’s landscape metaphor. However, a rational method to build these landscape models remains an open problem. Here we study vulval development in C. elegans by developing a framework based on Catastrophe Theory (CT) and approximate Bayesian computation (ABC) to build data-fitted landscape models. We first identify the candidate qualitative landscapes, and then use CT to build the simplest model consistent with the data, which we quantitatively fit using ABC. The resulting model suggests that the underlying mechanism is a quantifiable two-step decision controlled by EGF and Notch-Delta signals, where a non-vulval/vulval decision is followed by a bistable transition to the two vulval states. This new model fits a broad set of data and makes several novel predictions.     

The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions

The study of the factors structuring genetic variation can help to infer the neutral and adaptive processes shaping the demographic and evolutionary trajectories of natural populations. Here, we analyse the role of isolation by distance (IBD), isolation by resistance (IBR, defined by landscape composition) and isolation by environment (IBE, estimated as habitat and elevation dissimilarity) in structuring genetic variation in 25 blue tit (Cyanistes caeruleus) populations. We typed 1385 individuals at 26 microsatellite loci classified into two groups by considering whether they are located into genomic regions that are actively (TL; 12 loci) or not (NTL; 14 loci) transcribed to RNA. Population genetic differentiation was mostly detected using the panel of NTL. Landscape genetic analyses showed a pattern of IBD for all loci and the panel of NTL, but genetic differentiation estimated at TL was only explained by IBR models considering high resistance for natural vegetation and low resistance for agricultural lands. Finally, the absence for IBE suggests a lack of divergent selection pressures associated with differences in habitat and elevation. Overall, our study shows that markers located in different genomic regions can yield contrasting inferences on landscape‐level patterns of realized gene flow in natural populations.     

Effect of landscape context on fish metacommunity structuring in stream networks

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Adjacent woodlands rather than habitat connectivity influence grassland plant,carabid and bird assemblages in farmland landscapes

One response to biodiversity decline is the definition of ecological networks that extend beyond protected areas and promote connectivity in human-dominated landscapes. In farmland, landscape ecological research has focused more on wooded than open habitat networks. In our study, we assessed the influence of permanent grassland connectivity, described by grassland amount and spatial configuration, on grassland biodiversity. We selected permanent grasslands in livestock farming areas of north-western France, which were sampled for plants, carabids and birds. At two spatial scales we tested the effects of amount and configuration of grasslands, wooded habitats and crops on richness and abundance of total assemblages and species ecological groups. Grassland connectivity had no significant effects on total richness or abundance of any taxonomic group, regardless of habitat affinity or dispersal ability. The amount of wooded habitat and length of wooded edges at the 200 m scale positively influenced forest and generalist animal groups as well as grassland plant species, in particular animal-dispersed species. However, for animal groups such as open habitat carabids or farmland bird specialists, the same wooded habitats negatively influenced richness and abundance at the 500 m scale. The scale and direction of biodiversity responses to landscape context were therefore similar among taxonomic groups, but opposite for habitat affinity groups. We conclude that while grassland connectivity is unlikely to contribute positively to biodiversity, increasing or maintaining wooded elements near grasslands would be a worthwhile conservation goal. However, the requirements of open farmland animal species groups must be considered, for which such action may be deleterious.     

Human‐facilitated metapopulation dynamics in an emerging pest species,Cimex lectularius

The number and demographic history of colonists can have dramatic consequences for the way in which genetic diversity is distributed and maintained in a metapopulation. The bed bug (Cimex lectularius) is a re‐emerging pest species whose close association with humans has led to frequent local extinction and colonization, that is, to metapopulation dynamics. Pest control limits the lifespan of subpopulations, causing frequent local extinctions, and human‐facilitated dispersal allows the colonization of empty patches. Founder events often result in drastic reductions in diversity and an increased influence of genetic drift. Coupled with restricted migration, this can lead to rapid population differentiation. We therefore predicted strong population structuring. Here, using 21 newly characterized microsatellite markers and approximate Bayesian computation (ABC), we investigate simplified versions of two classical models of metapopulation dynamics, in a coalescent framework, to estimate the number and genetic composition of founders in the common bed bug. We found very limited diversity within infestations but high degrees of structuring across the city of London, with extreme levels of genetic differentiation between infestations (F_ST = 0.59). ABC results suggest a common origin of all founders of a given subpopulation and that the numbers of colonists were low, implying that even a single mated female is enough to found a new infestation successfully. These patterns of colonization are close to the predictions of the propagule pool model, where all founders originate from the same parental infestation. These results show that aspects of metapopulation dynamics can be captured in simple models and provide insights that are valuable for the future targeted control of bed bug infestations.     

Influence of edge effects on common vole population abundance in an agricultural landscape of eastern France

Vole demographics are often modified close to wooded environments. Population monitoring in such settings reveals substantial edge effects, although these have seldom been quantified. This study compares the abundance of common voleMicrotus arvalis (Pallas, 1778) populations at various distances from three types of wooded environment (hedgerow, copse and forest) and in two types of habitat (temporary and permanent grassland). In temporary grassland, substantial edge effects were detected along the boundaries of forests and hedgerows. At 100 m from the forest edge, voles were twice more abundant than at 50 m, four times more than at 25 m and eight times more than at 5 m. In permanent grassland, the edge effect was such that voles were practically absent up to 100 m from the forest edge. For both types of grassland, the edge effect was more pronounced for forest habitat than for hedgerows, that is, for elements with a large surface area of wooded environment. Our results suggest that landscape context may greatly affect the local abundance of voles. Given the considerable damage done byM. arvalis, the presence of wooded patches in grassland areas leads to lower vole densities in adjacent areas and this might be an alternative method to controlM. arvalis as a pest species.     

Biome stability predicts population structure of a southern African aridland bird species

Environments are heterogeneous in space and time, and the permeability of landscape and climatic barriers to gene flow may change over time. When barriers are present, they may start populations down the path toward speciation, but if they become permeable before the process of speciation is complete, populations may once more merge. In Southern Africa, aridland biomes play a central role in structuring the organization of biodiversity. These biomes were subject to substantial restructuring during Plio‐Pleistocene climatic fluctuations, and the imprint of this changing environment should leave genetic signatures on the species living there. Here, we investigate the role of adjacent aridland biome boundaries in structuring the genetic diversity within a widespread generalist bird, the Cape Robin‐chat (Cossypha caffra). We find evidence supporting a central role for aridland biomes in structuring populations across Southern Africa. Our findings support a scenario wherein populations were isolated in different biome refugia, due to separation by the exceptionally arid Nama Karoo biome. This biome barrier may have arisen through a combination of habitat instability and environmental unsuitability, and was highly unstable throughout the Plio‐Pleistocene. However, we also recovered a pattern of extensive contemporary gene flow and admixture across the Nama Karoo, potentially driven by the establishment of homesteads over the past 200 years. Thus, the barrier has become permeable, and populations are currently merging. This represents an instance where initial formation of a barrier to gene flow enabled population differentiation, with subsequent gene flow and the merging of populations after the barrier became permeable.     

Microsatellite markers reveal the potential for kin selection on black grouse leks

The evolution of social behaviour has puzzled biologists since Darwin. Since Hamilton''s theoretical work in the 1960s it has been realized that social behaviour may evolve through the effects of kinship. By helping relatives, an individual may pass on its genes despite negative effects on its own reproduction. Leks are groups of males that females visit primarily to mate. The selective advantage for males to join such social groups has been given much recent attention, but no clear picture has yet emerged. Here we show, using microsatellite analysis, that males but not females of a lekking bird (the black grouse, Tetrao tetrix) are genetically structured at the lek level. We interpret this structuring to be the effects of strong natal philopatry in males. This has the consequence that males on any specific lek should be more related than expected by chance as indicated by our genetic data. Our results thus suggest that kin selection is a factor that needs to be considered in the evolution and maintenance of the lek mating system in black grouse and sheds new light on models of lek evolution.     

Spatial and environmental effects on a rock‐pool metacommunity depend on landscape setting and dispersal mode

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Community structure in ichneumonid parasitoids at different spatial scales

The processes underlying parasitoid community structure are little known. Stochastic niche-apportionment models provide one route to underlying assemblage rules in this and other groups. Previous work has applied this approach to parasitoids found on single host species in single populations. However, parasitoid communities are known to extend across multiple hosts and scales. The patterns of relative abundances generated by five niche-apportionment models were compared to those observed in assemblages of two sub-families of the Ichneumonidae, the Diplazontinae and Pimplinae, at landscape and patch scales, Yorkshire, UK. Three of the five models produced patterns that were significantly different to the observed pattern for all taxonomic levels at both spatial scales. The Diplazontinae fit the random fraction (RF) model at the landscape scale in broadleaved woods. This suggests that hierarchical structuring and biotic interactions may play a role in the structuring of Diplazontinae assemblages at this scale. In contrast the Pimplinae fit the RF model only at the patch scale and only at one site. However, the Pimplini tribe (all chiefly parasitoids of Lepidoptera) fit the random assortment (RA) model at both the landscape and the patch scales, whilst the Ephialtini tribe (wide range of hosts) fit no model at either scale. The ecological interpretation of the RA model suggests that the Pimplini tribe is an unsaturated assemblage, where some of the total available resources are unused. Our results show, through the fit of mechanistic niche-apportionment models, that the processes that may structure ichneumonid parasitoid assemblages are not consistent across taxa and spatial scales.