Self-recognition affects plant communication and defense

Animals have the ability to distinguish self from non-self, which has allowed them to evolve immune systems and, in some instances, to act preferentially towards individuals that are genetically identical or related. Self-recognition is less well known for plants, although recent work indicates that physically connected roots recognize self and reduce competitive interactions. Sagebrush uses volatile cues emitted by clipped branches of self or different neighbours to increase resistance to herbivory. Here, we show that plants that received volatile cues from genetically identical cuttings accumulated less natural damage than plants that received cues from non-self cuttings. Volatile communication is required to coordinate systemic processes such as induced resistance and plants respond more effectively to self than non-self cues. This self/non-self discrimination did not require physical contact and is a necessary first step towards possible kin recognition and kin selection.     

Root K(+) acquisition in plants: the Arabidopsis thaliana model

K(+) is an essential macronutrient required by plants to complete their life cycle. It fulfills important functions and it is widely used as a fertilizer to increase crop production. Thus, the identification of the systems involved in K(+) acquisition by plants has always been a research goal as it may eventually produce molecular tools to enhance crop productivity further. This review is focused on the recent findings on the systems involved in K(+) acquisition. From Epstein's pioneering work >40 years ago, K(+) uptake was considered to consist of a high- and a low-affinity component. The subsequent molecular approaches identified genes encoding K(+) transport systems which could be involved in the first step of K(+) uptake at the plant root. Insights into the regulation of these genes and the proteins that they encode have also been gained in recent studies. A demonstration of the role of the two main K(+) uptake systems at the root, AtHKA5 and AKT1, has been possible with the study of Arabidopsis thaliana T-DNA insertion lines that knock out these genes. AtHAK5 was revealed as the only uptake system at external concentrations <10 μM. Between 10 and 200 μM both AtHAK5 and AKT1 contribute to K(+) acquisition. At external concentrations >500 μM, AtHAK5 is not relevant and AKT1's contribution to K(+) uptake becomes more important. At 10 mM K(+), unidentified systems may provide sufficient K(+) uptake for plant growth.     

Split-protein systems: beyond binary protein-protein interactions

It has been estimated that 650,000 protein-protein interactions exist in the human interactome (Stumpf et al., 2008), a subset of all possible macromolecular partnerships that dictate life. Thus there is a continued need for the development of sensitive and user-friendly methods for cataloguing biomacromolecules in complex environments and for detecting their interactions, modifications, and cellular location. Such methods also allow for establishing differences in the interactome between a normal and diseased cellular state and for quantifying the outcome of therapeutic intervention. A promising approach for deconvoluting the role of macromolecular partnerships is split-protein reassembly, also called protein fragment complementation. This approach relies on the appropriate fragmentation of protein reporters, such as the green fluorescent protein or firefly luciferase, which when attached to possible interacting partners can reassemble and regain function, thereby confirming the partnership. Split-protein methods have been effectively utilized for detecting protein-protein interactions in cell-free systems, Escherichia coli, yeast, mammalian cells, plants, and live animals. Herein, we present recent advances in engineering split-protein systems that allow for the rapid detection of ternary protein complexes, small molecule inhibitors, as well as a variety of macromolecules including nucleic acids, poly(ADP) ribose, and iron sulfur clusters. We also present advances that combine split-protein systems with chemical inducers of dimerization strategies that allow for regulating the activity of orthogonal split-proteases as well as aid in identifying enzyme inhibitors. Finally, we discuss autoinhibition strategies leading to turn-on sensors as well as future directions in split-protein methodology including possible therapeutic approaches.     

Protein-protein interactions: from global to local analyses

For the increasing number of species with complete genome sequences, the task of elucidating their complete proteomes and interactomes has attracted much recent interest. Although the proteome describes the complete repertoire of proteins expressed, the interactome comprises the pairwise protein-protein interactions that occur, or could occur, within an organism, and forms a large-scale sparse network. Here we discuss the challenges provided by present data, and outline a route from global analysis to more detailed and focused studies of protein-protein interactions. Carefully using protein-interaction data allows us to explore its potential fully alongside the evaluation of mechanistic hypotheses about biological systems.     

Ecological aspects of mycorrhizal symbiosis: with special emphasis on the functional diversity of interactions involving the extraradical mycelium

Different symbiotic mycorrhizal associations between plantsand fungi occur, almost ubiquitously, in a wide range of terrestrialecosystems. Historically, these have mainly been consideredwithin the rather narrow perspective of their effects on theuptake of dissolved mineral nutrients by individual plants.More recent research has placed emphasis on a wider, multifunctionalperspective, including the effects of mycorrhizal symbiosison plant and microbial communities, and on ecosystem processes.This includes mobilization of N and P from organic polymers,release of nutrients from mineral particles or rock surfacesvia weathering, effects on carbon cycling, interactions withmyco-heterotrophic plants, mediation of plant responses to stressfactors such as drought, soil acidification, toxic metals, andplant pathogens, as well as a range of possible interactionswith groups of other soil micro-organisms. Mycorrhizal fungiconnect their plant hosts to the heterogeneously distributednutrients required for their growth, enabling the flow of energy-richcompounds required for nutrient mobilization whilst simultaneouslyproviding conduits for the translocation of mobilized productsback to their hosts. In addition to increasing the nutrientabsorptive surface area of their host plant root systems, theextraradical mycelium of mycorrhizal fungi provides a directpathway for translocation of photosynthetically derived carbonto microsites in the soil and a large surface area for interactionwith other micro-organisms. The detailed functioning and regulationof these mycorrhizosphere processes is still poorly understoodbut recent progress is reviewed and potential benefits of improvedunderstanding of mycorrhizosphere interactions are discussed. Key words: Arbuscular mycorrhiza, biotic interactions, carbon flow, ectomycorrhiza, ericoid mycorrhiza, mycelium, nutrient uptake, symbiosis, weathering Received 22 January 2008; Revised 7 February 2008 Accepted 7 February 2008     

Polyploids as a “model system” for the study of heterosis

Heterosis research over the past century has focused primarily on diploid plants and animals. This is despite the fact that most heterotic organisms contain polyploid events in their recent and/or ancient past and various important crop species are heterotic polyploids. We present an argument for the study of heterosis within polyploid systems and give examples of how their study can improve current hypotheses and generate new ones. Polyploid systems allow experiments not possible in diploids but the insights gained must be incorporated into models to explain heterosis at all levels.     

Inbreeding increases susceptibility to powdery mildew (Oidium neolycopersici) infestation in horsenettle (Solanum carolinense L)

Inbreeding is common in flowering plants, but relatively few studies have examined its effects on interactions between plants and other organisms, such as herbivores and pathogens. In a recent paper, we documented effects of inbreeding depression on plant volatile signaling phenotypes, including elevated constitutive volatile emissions (and consequently greater herbivore recruitment to inbred plants) but reduced emission of key herbivore-induced volatiles that attract predatory and parasitic insects to damaged plants. While the effects of inbreeding on plant-insect interactions have been explored in only a few systems, even less is known about its effects on plant-pathogen interactions. Here we report the effects of inbreeding on horsenettle susceptibility to powdery mildew (Oidium neolycopersici), including more rapid onset of infection in inbred plants, particularly when plants were not previously damaged. These data suggest that inbreeding may increase plant susceptibility to pathogen infection and, therefore, may potentially facilitate pathogen establishment in natural populations.     

Positive interactions among plants

Experimental evidence for positive interactions, or facilitation, among plants has increased markedly during the last 10 years. Experiments documenting facilitation have been conducted in many diverse ecological systems, which suggests that positive interactions may be fundamental processes in plant communities. Here, I review the evidence for facilitation, the mechanisms by which facilitation operates, and the effects facilitation has on community structure. Facilitative mechanisms may act simultaneously with resource competition or allelopathy, and the overall effect of one species on another may be the product of multiple, complex interactions. Positive interactions may also determine community spatial patterns, permit coexistence, enhance diversity and productivity, and drive community dynamics. Once viewed as anecdotal and idiosyncratic, facilitation is now contributing to a more complete understanding of community structure and dynamics.     

Characterizing proteins in their cellular environment: Examples of recent advances in quantitative fluorescence microscopy

Quantitative characterization of protein interactions, both intramolecular and intermolecular, is crucial in understanding the mechanisms and regulation of their function. In recent years, it has become possible to obtain such information on protein systems in live cells, from bacteria to mammalian cell lines. This review discusses recent advances in measuring protein folding, absolute concentration, oligomerization, diffusion, transport, and organization at super‐resolution.     

The Multifunctional Role of Ectomycorrhizal Associations in Forest Ecosystem Processes

Belowground biological interactions that occur among plant roots, microorganisms and animals are dynamic and substantially influence ecosystem processes. Among these interactions, the ectomycorrhizal (ECM) symbiosis is remarkable but unfortunately these associations have mainly been considered within the rather narrow perspective of their effects on the uptake of dissolved mineral nutrients by individual plants. More recent research has placed emphasis on a wider, multifunctional perspective, including the effects of ectomycorrhizal symbiosis on plant and microbial communities, and on ecosystem processes. This includes mobilization of N and P from organic polymers, release of nutrients from mineral particles or rock surfaces via weathering, effects on carbon cycling, interactions with mycoheterotrophic plants, mediation of plant responses to stress factors such as drought, soil acidification, toxic metals, and plant pathogens, rehabilitation and regeneration of degraded forest ecosystems, as well as a range of possible interactions with groups of other soil microorganisms. Ectomycorrhizas are almost invariably characterized by a Hartig net composed of highly branched hyphae which entirely surround the outer root cortical cells. The Hartig net is the place of massive bidirectional exchanges of nutrients between the host and the fungus. Through these branched hyphae ectomycorrhizal fungi connect their plant hosts to the heterogeneously distributed nutrients required for their growth, enabling the flow of energy-rich compounds required for nutrient mobilization whilst simultaneously providing conduits for the translocation of mobilized products back to their hosts. In addition to increasing the nutrient absorptive surface area of their host plant root systems, the extraradical mycelium of ectomycorrhizal fungi provides a direct pathway for translocation of photosynthetically derived carbon from their hosts to microsites in the soil and a large surface area for interaction with other soil micro-organisms. The detailed functioning and regulation of these mycorrhizosphere processes is still poorly understood and needs detailed molecular approach to study these mycorrhizosphere processes but recent progress in ectomycorrhizal associations is reviewed and potential benefits of improved understanding of mycorrhizosphere interactions are discussed.     

植物中的细胞程序性死亡

细胞程序性死亡（ＰＣＤ）对于维持植物的正常生长发育非常重要,目前已成为植物学研究的一个热点。本文综合评述了近年来植物ＰＣＤ研究的某些进展,包括植物ＰＣＤ的特征,植物的营养生长、生殖生长以及与环境互作过程中存在的各种ＰＣＤ及其证据,植物ＰＣＤ发生的分子机制及其调控等等。对植物ＰＣＤ研究中有待进一步解决的问题和可能意义提出了自己的见解。     

植物中的细胞程序性死亡

细胞程序性死亡(PCD)对于维持植物的正常生长发育非常重要,目前已成为植物学研究的一个热点。本文综合评述了近年来植物PCD研究的某些进展,包括植物PCD的特征,植物的营养生长、生殖生长以及与环境互作过程中存在的各种PCD及其证据,植物PCD发生的分子机制及其调控等等。对植物PCD研究中有待进一步解决的问题和可能意义提出了自己的见解。     

Understanding plant defence responses against herbivore attacks: an essential first step towards the development of sustainable resistance against pests

Plant-herbivore relationships are complex interactions encompassing elaborate networks of molecules, signals and strategies used to overcome defences developed by each other. Herbivores use multiple feeding strategies to obtain nutrients from host plants. In turn, plants respond by triggering defence mechanisms to inhibit, block or modify the metabolism of the pest. As part of these defences, herbivore-challenged plants emit volatiles to attract natural enemies and warn neighbouring plants of the imminent threat. In response, herbivores develop a variety of strategies to suppress plant-induced protection. Our understanding of the plant-herbivore interphase is limited, although recent molecular approaches have revealed the participation of a battery of genes, proteins and volatile metabolites in attack-defence processes. This review describes the intricate and dynamic defence systems governing plant-herbivore interactions by examining the diverse strategies plants employ to deny phytophagous arthropods the ability to breach newly developed mechanisms of plant resistance. A cornerstone of this understanding is the use of transgenic tools to unravel the complex networks that control these interactions.     

Competition for nitrogen between plants and soil microorganisms

Experiments suggest that plants and soil microorganisms are both limited by inorganic nitrogen, even on relatively fertile sites. Consequently, plants and soil microorganisms may compete for nitrogen. While past research has focused on competition for inorganic nitrogen, recent studies have found that plants/mycorrhizae in a wide range of ecosystems can use organic nitrogen. A new view of competitive interactions between plants and soil microorganisms is necessary in ecosystem where plant uptake of organic nitrogen is observed.     

High-sensitivity mass spectrometry for imaging subunit interactions: hydrogen/deuterium exchange

In recent years, advances in mass spectrometry have provided unprecedented knowledge of protein expression within cells. It has become apparent that many proteins function as macromolecular complexes. Structural genomics programs are determining the fold of these proteins at an increasing rate and electron microscopic tomography potentially provides a means to determine the location of these complexes within the cell. A complete understanding of the molecular mechanism of these proteins requires detailed information on the interactions and dynamics within the complex. Recent advances in mass spectrometry now make it possible to use hydrogen/deuterium exchange to detect intersubunit interfaces and dynamics within supramolecular complexes.     

Got silicon? The non-essential beneficial plant nutrient

Research on a possible nutritional role for the element silicon has been hampered by the diverse beneficial effects that it has on monocots and dicots, and the subsequent difficulties in focusing studies on a single genetic model system. Although deemed a non-essential nutrient for the majority of plants, the benefits of silicon include increasing pest and pathogen resistance, drought and heavy metal tolerance, and the quality and yield of agricultural crops. Although the pathways and molecular mechanisms by which silicon is absorbed and deposited in plants are still unclear, recent progress has been achieved through the use of rice mutants that are deficient in silicon uptake. Additionally, the application of electron-energy-loss spectroscopy (EELS) allows one to determine the composition of silica deposits conclusively. Thereby shedding light upon the role of silicon in heavy metal tolerance. With the complete sequence of the genomes for a dicot (Arabidopsis) and a monocot (rice) available for large-scale genetic analysis, the future bodes well for a more complete understanding of the biological role of silicon and its mode of transport into and through plants.     

Signaling in pollen-pistil interactions.

A complex set of cell interactions is required to achieve fertilization. The pollen grain must be recognized by the pistil, take up water, and grow a pollen tube directionally through the style in order to deliver the sperm to the ovule. In many families of flowering plants, self-fertilization can be prevented by recognition mechanisms that allow self-pollen rejection by the pistil. The self-incompatibility response is under the genetic control of a single multi-allelic locus, the (Self-incompatibility) locus. There are two major classes of self-incompatibility systems. Gametophytic self-incompatibility has been well characterized in the Solanaceae and in the Papaveraceae, while sporophytic self-incompatibility has been well characterized in the Brassicaceae. In this review article, we present recent advances in understanding the signals mediating pollen recognition and pollen tube growth, in both compatible and incompatible interactions.     

Plant-microbe-soil interactions in the rhizosphere: an evolutionary perspective

Soils are the product of the activities of plants, which supply organic matter and play a pivotal role in weathering rocks and minerals. Many plant species have a distinct ecological amplitude that shows restriction to specific soil types. In the numerous interactions between plants and soil, microorganisms also play a key role. Here we review the existing literature on interactions between plants, microorganisms and soils, and include considerations of evolutionary time scales, where possible. Some of these interactions involve intricate systems of communication, which in the case of symbioses such as the arbuscular mycorrhizal symbiosis are several hundreds of millions years old; others involve the release of exudates from roots, and other products of rhizodeposition that are used as substrates for soil microorganisms. The possible reasons for the survival value of this loss of carbon over tens or hundreds of millions of years of evolution of higher plants are discussed, taking a cost-benefit approach. Co-evolution of plants and rhizosphere microorganisms is discussed, in the light of known ecological interactions between various partners in terrestrial ecosystems. Finally, the role of higher plants, especially deep-rooted plants and associated microorganisms in the weathering of rocks and minerals, ultimately contributing to pedogenesis, is addressed. We show that rhizosphere processes in the long run are central to biogeochemical cycles, soil formation and Earth history. Major anticipated discoveries will enhance our basic understanding and allow applications of new knowledge to deal with nutrient deficiencies, pests and diseases, and the challenges of increasing global food production and agroecosystem productivity in an environmentally responsible manner.