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1.
A novel bacterial strain, designated WS-MY5 T, capable of degrading a variety of polysaccharides was isolated from a brown algae ( Undaria pinnatifida) reservoir at Wando in the South Sea, South Korea. Strain WS-MY5 T was found to grow optimally at 30 °C, at pH 7.0–7.5 and in the presence of 2 % (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain WS-MY5 T falls within the clade comprising Winogradskyella species, clustering with the type strains of Winogradskyella pacifica, Winogradskyella arenosi, Winogradskyella rapida and Winogradskyella thalassocola, with which it exhibited 16S rRNA gene sequence similarity values of 97.3–98.8 %. It exhibited sequence similarity values of 93.0–96.2 % to the type strains of the other recognized Winogradskyella species. Strain WS-MY5 T was found to contain MK-6 as the predominant menaquinone and anteiso-C 15:0, iso-C 15:0, iso-C 15:0 3-OH, iso-C 17:0 3-OH and iso-C 15:1 G as the major fatty acids. The major polar lipids of strain WS-MY5 T were identified as phosphatidylethanolamine, two unidentified lipids and two unidentified aminolipids. The DNA G+C content of strain WS-MY5 T was determined to be 33.2 mol% and its DNA–DNA relatedness values with the type strains of W. pacifica, W. arenosi, W. rapida and W. thalassocola were in the range 16–28 %. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, enabled strain WS-MY5 T to be differentiated from the recognized Winogradskyella species. On the basis of the data presented here, strain WS-MY5 T is considered to represent a novel species of the genus Winogradskyella, for which the name Winogradskyella undariae sp. nov. is proposed. The type strain is WS-MY5 T (=KCTC 32261 T=CCUG 63832 T). 相似文献
2.
A bacterial strain designated antisso-27 T, previously isolated from saltpan in Taiwan while screening for bacteria for algicidal activity, was characterized using
the polyphasic taxonomic approach. Strain antisso-27 T was Gram-negative, aerobic, brownish yellow colored, rod-shaped, non-flagellated and non-gliding. Phylogenetic analyses based
on 16S rRNA gene sequences showed that strain antisso-27 T belonged to the genus Aquimarina within the family Flavobacteriaceae with relatively low sequence similarities of 94.0–96.6% to other valid Aquimarina spp. It contained iso-C 17:0 3-OH, iso-C 15:0, iso-C 16:0, iso-C 15:1 and iso-C 15:0 3-OH as the main fatty acids and contained a menaquinone with six isoprene units (MK-6) as the major isoprenoid quinone.
Major polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, an uncharacterized aminolipid and five uncharacterized
phospholipids. Strain antisso-27 T employed direct mode of algicidal lysis to Chlorella vulgaris strain 211-31; nevertheless, it released an algicidal substance against M. aeruginosa strain MTY01. This is the first study that the Aquimarina species possesses both direct and indirect algicidal activities. On the basis of the phylogenetic and phenotypic data, strain
antisso-27 T should be classified as representing a novel species, for which the name A. salinaria sp. nov. is proposed. The type strain is A. salinaria antisso-27 T (= BCRC 80080 T = LMG 25375 T). 相似文献
3.
Strain M1-2 T was isolated from the black sand from the seashore of Jeju Island, Republic of Korea and was classified using a polyphasic
taxonomic approach. Strain M1-2 T appeared as Gram-negative, motile rods that could grow in the presence of 1–10% (w/v) NaCl and at temperatures ranging from
4 to 37°C. This isolate has catalase and oxidase activity and hydrolyses aesculin, DNA and l-tyrosine. Based on phylogenetic analysis using 16S rRNA gene sequences, strain M1-2 T belongs to the genus Joostella and is clearly distinct from the other described species of this genus, Joostella marina (type strain En5 T). The 16S rRNA gene sequence similarity level between M1-2 T and J. marina En5 T is 97.2%, and the DNA–DNA relatedness value between the two strains is 23.9%. Strain M1-2 T contains MK-6 as the major menaquinone and iso-C 15:0, summed feature 3 (C 16:1 ω7c and/or iso-C 15:0 2OH) and iso-C 17:0 3OH as major cellular fatty acids. The DNA G + C content is 32.3 mol%. These data suggest that strain M1-2 T should be classified as a novel species, for which the name Joostella atrarenae sp. nov. is proposed. The type strain for the novel species is M1-2 T (= KCTC 23194 T = NCAIM B.002413 T). 相似文献
4.
A bacterial strain, designated KMM 6244 T, was isolated from the sea urchin Strongylocentrotus intermedius and subjected to a polyphasic taxonomic investigation. The bacterium was found to be heterotrophic, aerobic, non-motile and
spore-forming. Comparative phylogenetic analysis based on 16S rRNA gene sequencing placed the marine isolate in the genus
Bacillus. The nearest neighbor of strain KMM 6244 T was Bacillus decolorationis LMG 19507 T with a 16S rRNA gene sequence similarity of 98.0%. Sequence similarities with the other recognized Bacillus species were less than 96.0%. The results of the DNA–DNA hybridization experiments revealed a low relatedness (37%) of the
novel isolate with the type strain of B. decolorationis LMG 19507 T. Strain KMM 6244 T grew at 4–45°C and with 0–12% NaCl. It produced catalase and oxidase and hydrolyzed aesculin, casein, gelatin and DNA. The
predominant fatty acids were anteiso-C 15:0, iso-C 15:0, anteiso-C 17:0, C 15:0, iso-C 16:0 and iso-C 14:0. The DNA G + C content was 39.4 mol%. A combination of phylogenetic, genotypic and phenotypic data clearly indicated that
strain KMM 6244 T represents a novel species in the genus Bacillus, for which the name Bacillus berkeleyi sp. nov. is proposed. The type strain is KMM 6244 T (KCTC 12718 T = LMG 26357 T). 相似文献
5.
A Gram-staining positive, endospore-forming, motile and rod-shaped bacterial strain, BR-29 T, was isolated from soil from west coast of the Korean peninsula, and its taxonomic position was investigated by a polyphasic
study. Strain BR-29 T grew optimally at around pH 7.5, at 30°C and in the presence of 0.5% (w/v) NaCl. Phylogenetic analyses based on 16S rRNA
gene sequences showed that strain BR-29 T fell into a clade comprising the type strains of Cohnella species, with which it exhibited 16S rRNA gene sequence similarity values of 92.8–96.4%. Strain BR-29 T contained a cell wall peptidoglycan based on meso-diaminopimelic acid and MK-7 as the predominant menaquinone. The major fatty acids were anteiso-C 15:0, C 16:0 and iso-C 16:0. The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, lysylphosphatidylglycerol and two unidentified
phospholipids; a minor amount of phosphatidylglycerol was present. The DNA G+C content was 54.9 mol%. Strain BR-29 T could be differentiated from phylogenetically related Cohnella species by differences in phenotypic characteristics. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain
BR-29 T represents a novel species of the genus Cohnella, for which the name Cohnella
boryungensis sp. nov., is proposed. The type strain is BR-29 T (= KCTC 13735 T = CCUG 59598 T). 相似文献
6.
A Gram-stain-negative, non-motile, rod-shaped bacterial strain, JW-64-1 T, capable of degrading methamidophos was isolated from a methamidophos-manufacturing factory in China, and was subjected to
a polyphasic taxonomic investigation. Strain JW-64-1 T produced circular, smooth, transparent, yellow-colored colonies (1.0–2.0 mm) on LB agar after 2 days incubation. It grew
optimally at 25–30°C and pH 7.0 without the presence of NaCl. The G+C content of the total DNA was 63.6 mol%. A phylogenetic
analysis based on 16S rRNA gene sequences showed that strain JW-64-1 T fell within the cluster comprising Luteibacter species. The 16S rRNA gene sequence of strain JW-64-1 T was most closely related to Luteibacter rhizovicinus DSM 16549 T (98.6%), followed by Luteibacter
yeojuensis DSM 17673 T (98.4%) and L. anthropi CCUG 25036 T (98.2%). The major cellular fatty acids of strain JW-64-1 T were iso-C 15:0 (24.1%), iso-C 17:0 (20.2%) and summed feature 9 comprising iso-C 17:1 ω9c and/or C 16:0 10-methyl (20.3%). The major isoprenoid quinine was Q-8 (98%), and the major polar lipids were diphosphatidylglycerol, phosphatidylglycerol,
phosphoaminolipid, aminolipids-1, aminolipids-2, and phospholipids. The values for DNA–DNA relatedness between strain JW-64-1 T and the closest phylogenetic relatives of L. rhizovicinus and Luteibacter
yeojuensis were 34.8 ± 2.6 and 25.6 ± 3.1%, respectively. On the basis of the phenotypic, chemotaxonomic, DNA–DNA relatedness and phylogenetic
analysis based on the 16S rRNA gene sequences, strain JW-64-1 T represents a novel species of the genus Luteibacter, for which the name Luteibacter jiangsuensis sp. nov. is proposed. The type strain is JW-64-1 T (=CGMCC 1.10133 T = DSM 22396 T). 相似文献
7.
A novel marine bacterium, designated strain CNURIC014 T was isolated from coastal seawater of Jeju Island in Korea. Strain CNURIC014 T formed yellow colonies on marine agar 2216 and the cells were Gram-negative, non-motile, strictly aerobic, rod-shaped. The
temperature, pH and NaCl ranges for growth were 15–37°C, pH 6.0–9.0 and 1.0–7.0% NaCl. Phylogenetic analysis based on 16S
rRNA gene sequences indicated that strain CNURIC014 T was most closely related to Gaetbulibacter marinus and Gaetbulibacter saemankumensis, with a sequence similarity of 95.1% and 94.6%, respectively. The DNA G+C content of the strain was 33.1 mol% and the major
respiratory quinone was menaquinone-6. The major cellular fatty acids were iso-C 15:1 (22.8%), iso-C 15:0 (18.8%), summed feature 3 (iso-C 15:0 2-OH/C 16:1 ω7 c, 12.9%) and iso-C 17:0 3-OH (11.5%). On the basis of phenotypic, phylogenetic, and genotypic data, strain CNURIC014 T represents a novel species within the genus Geatbulibacter, for which the name Gaetbulibacter jejuensis sp. nov. is proposed. The type strain is CNURIC014 T(=KCTC 22615 T =JCM 15976 T). 相似文献
8.
A Gram-positive bacterium, designated M-GX18 T, was isolated from the rhizosphere soil of mango (Guangxi Province, China). The isolate produced nematicidal volatile compounds
with activities against the root-knot nematode Meloidogyne incognita. The organism was motile, catalase- and oxidase-positive, spore-forming and rod shaped. The predominant menaquinone was MK-7
and the major cellular fatty acid profiles were iso-C 15:0, anteiso-C 15:0 and iso-C 16:0. The DNA G+C content was 38.9%. A phylogenetic analysis based on 16S rRNA gene sequences showed that this organism represented
a new species of the genus Lysinibacillus. Strain M-GX18 T exhibited high 16S rRNA gene sequence similarity with its closest neighbors Lysinibacillus sphaericus (98.5%), Lysinibacillus fusiformis (98.1%) and Lysinibacillus xylanilyticus (98.6%). The physiological, biochemical and chemotaxonomic data, including DNA–DNA hybridization relatedness data, indicate
that strain M-GX18 T can be distinguished from all the related species of the genus Lysinibacillus. Therefore, on the basis of the polyphasic taxonomic data presented, a new species of the genus Lysinibacillus, Lysinibacillus mangiferahumi, with the type strain M-GX18 T (=DSM 24076 T = CCTCC AB 2010389 T) is proposed. 相似文献
9.
Strain Gsoil 348 T was isolated from a ginseng field soil sample by selecting micro-colonies from one-fifth strength modified R2A agar medium after a long incubation period. 16S rRNA gene sequence analysis indicated that the strain is related to members of the phylum Armatimonadetes (formerly called candidate phylum OP10). Strain Gsoil 348 T is mesophilic, strictly aerobic, non-motile and rod-shaped. It only grows in low nutrient media. The major respiratory quinones are menaquinones MK-11 and MK-10, and the main fatty acids are iso-C 15:0, iso-C 17:0, C 16:0 and C 16:1 ω11 c. The G+C content is 61.4 mol%. The 16S rRNA gene sequences in public databases belonging to the phylum Armatimonadetes were clustered here into 6 groups. Five of these groups constituted a coherent cluster distinct from the sequences of other phyla in phylogenetic trees that were constructed using multiple-outgroup sequences from 49 different phyla. On the basis of polyphasic taxonomic analyses, it is proposed that strain Gsoil 348 T (= KACC 14959 T = JCM 17079 T) should be placed in Fimbriimonas ginsengisoli gen. nov., sp. nov., as the cultured representative of the Fimbriimonadia class. nov., corresponding with Group 4 of the phylum Armatimonadetes. 相似文献
10.
Strain AK12 T, an orange pigmented Gram-negative, rod shaped, non-motile bacterium, was isolated from a mud sample collected from a brackish
water pond at Rampur of West Bengal, India. The strain was positive for oxidase, catalase and phosphatase. The predominant
fatty acids were iso-C 15:0 (42.7%), iso-C 17:0 3OH (13.2%), C 16:1ω7c/C 16:1ω6c (summed feature 3) (8.0%), iso-C 17:1 I/anteiso-C 17:1 B (summed feature 4) (6.1%) and iso-C 17:1ω9c/C 16:0 10-methyl (summed feature 9) (9.4%). Strain AK12 T contained MK-7 as the major respiratory quinone and phosphatidylethanolamine, one unidentified aminophospholipid and six
unidentified lipids as the polar lipids. The G + C content of DNA of the strain AK12 T was 46.2 mol%. The 16S rRNA gene sequence analysis indicated that strain AK12 T was member of the genus Echinicola and closely related to Echinicola vietnamensis, Echinicola pacifica and Echinicola jeungdonensis with pair-wise sequence similarity of 96.8, 96.3 and 96.0% respectively. Phylogenetic analyses indicated that the strain
AK12 T clustered with E. vietnamensis and together with E. pacifica and E. jeungdonensis with a phylogenetic distance of 5.1, 6.3 and 6.6% (94.9, 93.7 and 93.4% similarity) respectively. Based on data from the
current polyphasic study, strain AK12 T is proposed as a novel species of the genus Echinicola, for which the name Echinicola shivajiensis sp. nov. is proposed. The type strain of E. shivajiensis is AK12 T (= MTCC 11083 T = JCM 17847 T). 相似文献
11.
A Gram-negative, orange-pigmented, rod-shaped bacterium, designated strain CP32 T was isolated from a brown alga Carpopeltis affinis collected on the coast of Jeju Island, Republic of Korea. The isolate grew at 10–37°C (optimum 25°C) and at pH 6.5–9.5 (optimum pH 7.0). The 16S rRNA gene sequence of the isolate showed much similarity with the type strains of recognized species of the genus Winogradskyella (94.0–96.6%). The most closely related species were Winogradskyella echinorum KMM 6211 T, Winogradskyella ulvae KMM 6390 T, Winogradskyella thalassocola KMM 3907 T, Winogradskyella poriferorum UST030701-295 T, and Winogradskyella eximia KMM 3944 T. The major respiratory quinone was menaquinone-6 (MK-6) and the predominant cellular fatty acids were iso-C 15:1 G (24.8%), iso-C 15:0 (23.4%), and iso-C 17:0 3-OH (11.6 %). The DNA G+C content was 33.3 mol%. The polar lipid profile was composed of phosphatidylethanolamine, two aminolipids, and five unknown lipids. On the basis of phenotypic features, and the result of 16S rRNA gene sequence analysis, strain CP32 T (=KCTC 23835 T =JCM 18454 T) represents a novel species of the genus Winogradskyella, for which the name Winogradskyella jejuensis sp. nov. is proposed. 相似文献
12.
A Gram-staining-negative, motile, non-spore-forming and rod-shaped bacterial strain, 20-23R T, was isolated from intestine of bensasi goatfish, Upeneus bensasi, and its taxonomic position was investigated by using a polyphasic study. Phylogenetic analyses based on 16S rRNA gene sequences
revealed that strain 20-23R T belonged to the genus Shewanella. Strain 20-23R T exhibited 16S rRNA gene sequence similarity values of 99.5, 99.2, and 97.5% to Shewanella algae ATCC 51192 T, Shewanella haliotis DW01 T, and Shewanella chilikensis JC5 T, respectively. Strain 20-23R T exhibited 93.1–96.0% 16S rRNA gene sequence similarity to the other Shewanella species. It also exhibited 98.3–98.4% gyrB sequence similarity to the type strains of S. algae and S. haliotis. Strain 20-23R T contained simultaneously both menaquinones and ubiquinones; the predominant menaquinone was MK-7 and the predominant ubiquinones
were Q-8 and Q-7. The fatty acid profiles of strain 20–23R T, S. algae KCTC 22552 T and S. haliotis KCTC 12896 T were similar; major components were iso-C 15:0, C 16:0, C 16:1 ω7c and/or iso-C 15:0 2-OH and C 17:1 ω8c. The DNA G+C content of strain 20-23R T was 53.9 mol%. Differential phenotypic properties and genetic distinctiveness of strain 20–23R T, together with the phylogenetic distinctiveness, revealed that this strain is distinguishable from recognized Shewanella species. On the basis of the data presented, strain 20-23R T represents a novel species of the genus Shewanella, for which the name Shewanella upenei sp. nov. is proposed. The type strain is 20–23R T (=KCTC 22806 T =CCUG 58400 T). 相似文献
13.
A Gram-negative, motile and rod-shaped bacterial strain, designated S7-3 T, was isolated from a tidal flat sediment at Saemankum on the western coast of Korea. Phylogenetic analyses based on 16S rRNA gene and gyrB sequences showed that strain S7-3 T belonged to the genus Shewanella, clustering with Shewanella decolorationis S12 T. Strain S7-3 T exhibited 98.8 % 16S rRNA gene sequence similarity and 96.8 % gyrB sequence similarity to S. decolorationis S12 T, respectively. The 16S rRNA gene sequence similarity values between strain S7-3 T and other members of the genus Shewanella were in the range of 93.0–98.0 %. Strain S7-3 T contained simultaneously both menaquinones (MK) and ubiquinones (Q); the predominant menaquinone was MK-7 and the predominant ubiquinones were Q-7 and Q-8. The fatty acid profiles of strain S7-3 T and S. decolorationis JCM 21555 T were similar; major components were C 17:1 ω8 c, iso-C 15:0 and iso-C 15:0 2-OH and/or C 16:1 ω7 c. The DNA G+C content of strain S7-3 T was 51.8 mol% and its mean DNA–DNA relatedness value with S. decolorationis JCM 21555 T was 43 %. Differential phenotypic properties of strain S7-3 T, together with the phylogenetic and genetic distinctiveness, revealed that this strain is distinguishable from recognized Shewanella species. On the basis of the data presented, strain S7-3 T is considered to represent a novel Shewanella species, for which the name Shewanella seohaensis sp. nov. is proposed. The type strain is S7-3 T (=KCTC 23556 T = CCUG 60900 T). 相似文献
14.
A Gram-negative, non-motile, non-endospore-forming bacterial strain, designated DPSR-4 T, was isolated from a tidal flat sediment on the southern coast of Korea. Strain DPSR-4 T grew optimally at 25–30°C, at pH 7.0–7.5 and in the presence of 2% (w/v) NaCl. A Neighbour-Joining phylogenetic tree based
on 16S rRNA gene sequences revealed that strain DPSR-4 T clustered with Salinimonas
chungwhensis BH030046 T by a high bootstrap resampling value of 99.7%. Strain DPSR-4 T exhibited 96.2% 16S rRNA gene sequence similarity to that of S. chungwhensis BH030046 T and 93.7–96.6% sequence similarity to the sequences of type strains of Alteromonas species. Strain DPSR-4 T contained Q-8 as the predominant ubiquinone and iso-C 15:0 2-OH and/or C 16:1
ω7 c, C 16:0 and C 18:1
ω7 c as the major fatty acids. The major polar lipids detected in strain DPSR-4 T and S. chungwhensis KCTC 12239 T were phosphatidylglycerol, phosphatidylethanolamine and an unidentified phospholipid. The DNA G+C content was 53.4 mol%.
Differential phenotypic properties and phylogenetic distinctiveness of strain DPSR-4 T demonstrated that this strain is distinguishable from the sole recognized species of the genus Salinimonas, S. chungwhensis. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain DPSR-4 T is considered to represent a novel species of the genus Salinimonas, for which the name Salinimonas lutimaris sp. nov. is proposed. The type strain is DPSR-4 T (KCTC 23464 T, CCUG 60743 T). 相似文献
15.
A Gram-negative, coccoid shaped bacterium isolated from the outer surface of the medicinal leech Hirudo medicinalis was characterized. The 16S rRNA gene sequence comparison revealed that the bacterium was closely related to species of the genus Luteolibacter. Luteolibacter pohnpeiensis was the most closely related species (94.6 % sequence similarity), followed by Luteolibacter luojiensis (93.4 %) and Luteolibacter algae (93.3 %). Chemotaxonomic data (major ubiquinone: MK-9; major polar lipids: phosphatidylethanolamine and phosphatidylglycerol; and major fatty acids: iso-C 14:0, C 16:0, iso-C 16:1, and anteiso-C 15:0) supported the affiliation of the isolate to the genus Luteolibacter. DNA–DNA hybridizations with the type strain of L. pohnpeiensis was 31 % (reciprocal value 30 %). A phenotypic differentiation of strain E100 T from L. pohnpeiensis and the other Luteolibacter species was possible by several physiological tests. We conclude Strain E100 T represents a novel species, for which we propose the name Luteolibacter cuticulihirudinis sp. nov. with the type strain E100 T (=CCM 8400 T = LMG 26924 T). 相似文献
16.
A novel bacterium B9 T was isolated from tidal flat sediment. Its morphology, physiology, biochemical features, and 16S rRNA gene sequence were
characterized. Colonies of this strain are yellow and the cells are Gram-negative, rod-shaped, and do not require NaCl for
growth. The 16S rRNA gene sequence similarity indicated that strain B9 T is associated with the genus Lysobacter (≤ 97.2%), Xanthomonas (≤ 96.8%), Pseudomonas (≤ 96.7%), and Luteimonas (≤ 96.0%). However, within the phylogenetic tree, this novel strain shares a branching point with the species Luteimonas composti CC-YY255 T (96.0%). The DNA-DNA hybridization experiments showed a DNA-DNA homology of 23.0% between strain B9 T and Luteimonas mephitis B1953/27.1 T. The G+C content of genomic DNA of the type strain is 64.7 mol% (SD, 1.1). The predominant fatty acids are iso-C 11:0, iso-C 15:0, iso-C 16:0, iso-C 17:0, iso-C 17:0
ω9 c, and iso-C 11:0 3-OH. Combined analysis of the 16S rRNA gene sequences, fatty acid profile, and results from physiological and biochemical
tests indicated that there is genotypic and phenotypic differentiation of the isolate from other Luteimonas species. For these reasons, strain B9 T was proposed as a novel species, named Luteimonas aestuarii. The type strain of the new species is B9 T (= KCTC 22048 T, DSM 19680 T). 相似文献
17.
Two novel, Gram-positive, motile, coccal bacteria, strains L1b-b9 T and B5a-b5, were isolated from a potato cultivation field in Ochang, Korea. These isolates grew at 10–45°C, pH 5.0–10.0,
and in the presence of 8% (w/v) NaCl. The diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. The major menaquinone was MK-8(H 4) and the main cellular fatty acids were iso-C 14:0, iso-C 15:0, and anteiso-C 15:0. Polar lipids in strain L1b-b9 T consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, and an unknown glyco-amino lipid. The G+C
content of genomic DNA was 73.6 mol%. A phylogenetic analysis based on 16S rRNA gene sequences showed that strains L1b-b9 T and B5a-b5 shared 99.36% similarity and formed a robust clade with the type species of the genus Phycicoccus. Strain L1b-b9 T is related most closely to Phycicoccus cremeus V2M29 T (97.52% 16S rRNA gene sequence similarity). On the basis of phylogenetic characteristics, the name Phycicoccus ochangensis sp. nov. is proposed for strain LIb-b9 T (=KCTC 19694 T =JCM 17595 T). 相似文献
18.
A Gram-positive, non-pigmented, rod-shaped, diazotrophic bacterial strain, designated SC-N012 T, was isolated from rhizosphere soil of sugarcane and was subjected to a polyphasic taxonomic study. The strain exhibited
phenotypic properties that included chemotaxonomic characteristics consistent with its classification in the genus Bacillus. Sequence analysis of the 16S rRNA gene of SC-N012 T revealed the closest match (98.9% pair wise similarity) with Bacillus clausii DSM 8716 T. However, DNA–DNA hybridization experiments indicated low levels of genomic relatedness (32%) with this strain. The major
components of the fatty acid profile are iso-C 15:0, anteiso-C 15:0, iso-C 17:0 and anteiso-C 17:0. The diagnostic cell-wall diamino acid was meso-diaminopimelic acid. The G+C content of the genomic DNA is 43.0 mol%. The lipids present in strain SC-N012 T are diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol and two unknown phospholipids. Their predominant
respiratory quinone was MK-7. Studies of DNA-DNA relatedness, morphological, physiological and chemotaxonomic analyses and
phylogenetic data based on 16S rRNA gene sequencing allowed strain SC-N012 T to be described as members of novel species of the genus Bacillus, for which the name Bacillus rhizosphaerae sp. nov. is proposed. The type strain is SC-N012 T (=DSM 21911 T = NCCB 100267 T). 相似文献
19.
A Gram-negative, aerobic, non-flagellated, non-gliding and rod-shaped bacterial strain, designated M-M16 T, was isolated from seashore sand around a seaweed farm on the South Sea, South Korea, and its taxonomic position was investigated by using a polyphasic study. Strain M-M16 T grew optimally at 30 °C, at pH 7.0–8.0 and in the presence of 2 % (w/v) NaCl. Strain M-M16 T exhibited the highest 16S rRNA gene sequence similarity values to the type strains of Gaetbulibacter lutimaris (96.5 %) and Flaviramulus basaltis (95.8 %). Neighbour-joining and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences revealed that strain M-M16 T clustered with the type strains of Gaetbulibacter species and F. basaltis. Strain M-M16 T contained MK-6 as the predominant menaquinone and iso-C 15:1 G, iso-C 15:0 and iso-C 17:0 3-OH as the major fatty acids. The major polar lipids detected in strain M-M16 T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of strain M-M16 T was 37.4 mol%. The phylogenetic and chemotaxonomic data and other phenotypic properties revealed that strain M-M16 T represents a novel genus and species within the family Flavobacteriaceae, for which the name Sabulilitoribacter multivorans gen. nov., sp. nov. is proposed. The type strain of S. multivorans is M-M16 T (= KCTC 32326 T = CCUG 63831 T). 相似文献
20.
A Gram-stain-negative, wheat, rod-shaped, non-motile, non-spore forming, and facultatively anaerobic bacterium strain, designated as PIT, was isolated from saline silt samples collected in saltern in Yantai, Shandong, China. Growth was observed within the ranges 4–45 °C (optimally at 33 °C), pH 6.0–9.0 (optimally at pH 7.0) and 1.0–11.0% NaCl (optimally at 3.0%, w/v). Strain PIT showed highest 16S rRNA gene sequence similarity to Kangiella sediminilitoris BB-Mw22T (98.3%) and Kangiella taiwanensis KT1T (98.3%). The major cellular fatty acids (>?10% of the total fatty acids) were iso-C15:0 (52.7%) and summed featured 9 (iso-C17:1ω9c/C16:0 10-methyl, 11.8%). The major polar lipids identified were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylmonomethylethanolamine and phosphatidylglycerol. The major respiratory isoprenoid quinone was Q-8. The G?+?C content of the genomic DNA was 45.8%. Average Nucleotide Identity values between whole genome sequences of strain PIT and next related type strains supported the novel species status. Based on physiological, biochemical, chemotaxonomic characteristics and genomic analysis, strain PIT is considered to represent a novel species within the genus Kangiella, for which the name Kangiella shandongensis sp. nov. is proposed. The type strain is PIT (=?KCTC 82509 T?=?MCCC 1K04352T). 相似文献
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