Plasmodium falciparum: Drug sensitivity in vitro of isolates before and after adaptation to continuous culture

Fifteen strains of Plasmodium falciparum have been cultivated since 1979 using the Trager and Jensen method of continuous culture on isolates from malaria patients. One hundred and two drug sensitivity studies have been carried out on these strains using a semimicro test. Three isolates, initially resistant to chloroquine, adapted rapidly to in vitro cultivation and maintained their high level of resistance (ED₅₀ above 660 nM). Eleven isolates, initially chloroquine sensitive (ED₅₀ under 90 nM) became resistant to this drug (ED₅₀ = 190 to 1950 nM) after the 2–15 weeks required for their adaptation to continuous culture. The resistance of these strains never decreased during the following 15 months of continuous culture. The sensitivity to quinine varied initially from one strain to another (ED₅₀= 160 to 660 nM) and fluctuated during cultivation in the ratio of 1, 3.5 for a given strain. The sensitivity of mefloquine remained high for all strains (ED₅₀ under 150 nM) but one (ED₅₀ = 560 nM). These results suggest that there might be a relationship between in vitro adaptation to culture of P. falciparum by the Trager-Jensen method and a chloroquine-resistant characteristic of the strain. There is the possibility of the emergence of a drug-resistant subpopulation or of changes in the metabolic pathways.     

Structure of actin paracrystals induced by nerve growth factor

When nerve growth factor is added to F-actin, well-ordered bundles of filaments are formed. These bundles are observed even at low concentrations of NGF²¹, but when N-bromosuccinimide-treated NGF, a biologically inactive form of the protein is used, a much higher concentration is required to produce aggregation. Moreover, the bundles induced by the modified NGF are not very well ordered and show amorphous aggregates attached at various points.Electron microscopy of paracrystals induced by native NGF shows that, although they resemble pure actin paracrystals induced by Mg²⁺, the interfilament spacing is larger and bridges connect the filaments. Optical diffraction patterns show, in addition to the off-meridional reflections characteristic of the actin helix, meridional reflections on the first and fourth layer-lines, at axial spacings of 37 and 9 nm. Measurements of the axial positions of the layer-lines show that the actin helical symmetry is not significantly different from that in pure actin paracrystals. The presence of the meridional reflections indicates that groups of two or three bridges with spacing 9 nm or nearly 9 nm are arranged along the bundles at a repeating interval of 37 nm.Actin filament bundles have been observed in several non-muscle cells, and specific actin-binding proteins have been identified as responsible for this aggregation. Our in vitro observations show that the biologically active form of NGF interacts with actin and organizes it into well-ordered paracrystalline arrays. The in vitro formation of NGF-actin complexes may be related to the in vivo mechanism of action of this growth factor.     

Analysis of multitemperature isothermal titration calorimetry data at very low c: Global beats van't Hoff

Isothermal titration calorimetry data for very low c (≡K[M]₀) must normally be analyzed with the stoichiometry parameter n fixed — at its known value or at any reasonable value if the system is not well characterized. In the latter case, ΔH° (and hence n) can be estimated from the T-dependence of the binding constant K, using the van't Hoff (vH) relation. An alternative is global or simultaneous fitting of data at multiple temperatures. In this Note, global analysis of low-c data at two temperatures is shown to estimate ΔH° and n with double the precision of the vH method.     

Unidirectional melting of Salmonella flagella in vitro

Asakura et al. (1968) have shown that when short fragments of Salmonella flagella (seeds) are added, at room tempetature, to a solution containing monomeric flagellin at physiological ionic strength and pH, each fragment grows longer at one of the two ends. This end and the opposite end were named T and H, respectively. In the present study we investigated the direction of the reversed process, melting, which may be brought about by simple heating. By the method of cross-mixing of monomers and seeds derived from strains SJ25 and SJ670, two types of block copolymers were prepared: the first type, (n-i)², was made by mixing n-seed and i-monomer at a ratio of 1:6, and the second type, (i-n), was made by mixing i-seed and i-monomer first and secondly n-monomer at a ratio of 1:5:1. Both preparations were heated at 50 °C for four minutes for partial melting, and the products were labelled with antibody against n-flagella and observed by electron microscopy. It was found that the proportion of block copolymers in (n-i) was changed little by heating, while in (i-n), the proportion of block copolymers decreased considerably and that of homogeneous i-polymers increased to a great extent. Before and after heating, we measured lengths of the n and i-blocks of copolymers and homogeneous n and i-polymers, which were contained in the preparations. On the basis of the statistical analyses of the data with the aid of computer simulations, it was concluded that, upon heating, flagellar polymers melt almost exclusively at their T-ends.Using ³⁵S-labelled n-flagella (n¹-flagella), we prepared homopolymers (n¹-n) and (n-n¹) which are analogous to (n-i) and (i-n). Both homopolymers were heated at 50 °C and the release of n¹-monomer from each homopolymer was followed. The results obtained supported the above conclusion.     

Ribosomal FISH mapping reveals hybridity in phytoestrogen producing Curcuma species from Thailand

Species in the genus Curcuma (Zingiberaceae) that are cultivated widely in Thailand for their phytoestrogen-producing rhizomes are called wan-chak-motluk. Five cultivars belonging to Curcuma comosa (cultivars with 2n?=?42 and 63) and Curcuma elata (2n?=?63) were examined using the molecular cytogenetic method of fluorescence in situ hybridisation (FISH) in order to identify genetic relationships among these cultivars based on chromosomal maps of the 18S?C25S ribosomal loci. The results revealed hybrid features in this Curcuma species group and a significant similarity among wan-chak-motluk cultivars. The main features included: (1) the presence of the single largest ribosomal site, assigned the Cc1 marker site, in the somatic 2n complement of all cultivars, and (2) the odd numbers of ribosomal sites in the complements, most often in sets of three. We therefore propose that the cultivar with 2n?=?42 (C. comosa) is a homoploid hybrid species comprised of two different ancestral genomes and has a diploid status with the basic chromosome number x?=?21. The cultivars with 2n?=?63 (C. comosa and C. elata) are most probably triploids arising within the 2n?=?42 diploid species/cultivars via a meiotic modification, rather than from hybridisation between diploid and tetraploid plants. The knowledge about genetic and genomic relationships among wan-chak-motluk cultivars will be important in the research projects that aim to explore and promote new plant materials for cultivation.     

The enzymatic synthesis of S-adenosyl-l-[2(n)-H]homocysteine

A rapid, efficient method is described for the enzymatic conversion of S-adenosyl-l-[2(n)-³H]methionine to S-adenosyl-l-[2(n)-³H]homocysteine. Partially purified glycine N-methyltransferase is used in the reaction which yields 98% conversion. The product is purified using high-pressure liquid chromatography and is concentrated by lyophilization. S-Adenosyl-l-[2(n)-³H]homocysteine synthesized by this method is an active substrate for S-adenosylhomocysteine (SAH) hydrolase. A novel assay procedure for SAH hydrolase is also described, in which unreacted S-adenosyl-l-[2(n)-³H]homocysteine is removed by adsorption to dextran-coated charcoal.     

Freeze-Dry Microscopy: Impact of Nucleation Temperature and Excipient Concentration on Collapse Temperature Data

The objective of this study was to investigate the impact of nucleation temperature (T _n) and excipient concentration on the collapse temperature data obtained from freeze-dry microscopy (FDM) experiments. T _n, the temperature of the onset of collapse (T _oc), and the full collapse temperature (T _fc) were determined for aqueous solutions of polyvinylpyrrolidone (PVP) 40 kDa and 2-(hydroxypropyl)-ß-cyclodextrin. Concentrations were varied from 1% to 20% (w/w) for PVP and from 1% to 30% (w/w) for the 2-(hydroxypropyl)-ß-cyclodextrin. Mutual correlation coefficients were calculated for the observed T _n, T _oc, and concentrations of the solutions. In addition, outliers were detected and eliminated by applying the leaving-one-out routine and calculating correlation coefficients without it. T _n was found to be non-correlated with concentrations and only weakly correlated with T _oc. The correlation between these two temperatures was particularly poor for the solutions of the highest and lowest concentrations. In contrast, T _oc correlated much better with the corresponding concentrations, resulting in a quadratic fit for PVP and a linear fit for 2-(hydroxypropyl)-ß-cyclodextrin.     

DNA sequence-specific ligands: XVI. Series of the DBP(<Emphasis Type="Italic">n</Emphasis>) fluorescent dimeric bisbenzimidazoles with 1,4-piperazine-containing linkers

A novel series of the DBP(n) fluorescent symmetric dimeric bisbenzimidazoles in which the bisbenzimidazole fragments were attached to an oligomeric linker with the 1,4-piperazine residue in its center were prepared. The DBP(n) molecules were distinguished by the number of methylene groups n (where n = 1, 2, 3, 4) in the linker. The DBP(n) synthesis was based on a condensation of the monomeric bisbenzimidazole (MB) with 1,4-piperazinedialkylcarbonic acids. The ability of the DBP(n) dimeric bisbenzimidazoles to form complexes with the double-stranded DNA was demonstrated by a complex of physicochemical methods, including spectroscopy in the visual UV-area, circular dichroism (CD), and fluorescence. The DBP(1–4) molecules were localized in the DNA minor groove by the CD method with the use of cholesteric liquid-crystalline dispersions (CLCD) of the double-stranded DNA. The DBP(n) dimeric bisbenzimidazoles were easily soluble in water, penetrated through cellular and nuclear membranes, and stained DNA in living cells distinct from the previously synthesized DB(n) series.     

Electronic property of Group IV phthalocyanine dimers: SiPcMPc

A series of Group IV phthalocyanine (Pc) dimers, (n-C₆H₁₃)₃SiOSiPcOSiPcOSi(n-C₆H₁₃)₃ (SiPcSiPc), (n-C₆H₁₃)₃SiOSiPcOGePcOSi(n-C₆H₁₃)₃ (SiPcGePc), and (n-C₆H₁₃)₃SiOSiPcOSnPcOH (SiPcSnPc), was characterized by cyclic voltammetry and DFT calculation. Two oxidations and two reductions were observed for (n-C₆H₁₃)₃SiOSiPcOSiPcOSi(n-C₆H₁₃)₃ and (n-C₆H₁₃)₃SiOSiPcOGePcOSi(n-C₆H₁₃)₃, while there were two oxidations and three reductions for (n-C₆H₁₃)₃SiOSiPcOSnPcOH. The Pc with a bigger size of the central metal in one part of the dimeric compound is more difficult to be oxidized but it is easier to be reduced at the same time: i.e., both oxidation and reduction potentials showed a positive shift with the increase of the size of the central metal atom. Density functional theory was used to optimize the structures of the Pc dimers and to understand the electrochemical properties. The optimized structures of HOSiPcOSiPcOH, HOSiPcOGePcOH and HOSiPcOSnPcOH as model compounds for SiPcSnPc, SiPcGePc, SiPcSiPc, respectively, show that all the Pc dimers are staggered, the plane-to-plane distances are 3.394, 3.538 and 3.722 Å, respectively. Tin generates a saddle-type structure of phthalocyanine, but silicon or germanium does not greatly distort the ring structure, and yields a planar ring structure. A large plane-to-plane distance and a high degree of plane distortion yield a red-shift of Q-band, a low ring current, high oxidation and low reduction potentials and high ionization energies.     

Biochemical Characterization of the Oxygenation of Unsaturated Fatty Acids by the Dioxygenase and Hydroperoxide Isomerase of Pseudomonas aeruginosa 42A2

We have studied oxygenation of fatty acids by cell extract of Pseudomonas aeruginosa 42A2. Oleic acid ((9Z)-18:1) was transformed to (10S)-hydroperoxy-(8E)-octadecenoic acid ((10S)-HPOME) and to (7S,10S)-dihydroxy-(8E)-octadecenoic acid (7,10-DiHOME). Experiments under oxygen-18 showed that 7,10-DiHOME contained oxygen from air and was formed sequentially from (10S)-HPOME by isomerization. (10R)-HPOME was not isomerized. The (10S)-dioxygenase and hydroperoxide isomerase activities co-eluted on ion exchange chromatography and on gel filtration with an apparent molecular size of ∼50 kDa. 16:1n-7, 18:2n-6, and 20:1n-11 were also oxygenated to 7,10-dihydroxy fatty acids, and (8Z)-18:1 was oxygenated to 6,9-dihydroxy-(7E)-octadecenoic acid. A series of fatty acids with the double bond positioned closer to ((6Z)-18:1, (5Z,9Z)-18:2) or more distant from the carboxyl group ((11Z)-, (13Z)-, and (15Z)-18:1) were poor substrates. The oxygenation mechanism was studied with [7S-²H]18:1n-9, [7R-²H]18:2n-6, and [8R-²H]18:2n-6 as substrates. The pro-R hydrogen at C-8 was lost in the biosynthesis of (10S)-HPODE, whereas the pro-S hydrogen was lost and the pro-R hydrogen was retained at C-7 during biosynthesis of the 7,10-dihydroxy metabolites. Analysis of the fatty acid composition of P. aeruginosa revealed relatively large amounts of (9E/Z)-16:1 and (11E/Z)-18:1 and only traces of 18:1n-9. We found that (11Z)-18:1 (vaccenic acid) was transformed to (11S,14S)-dihydroxy-(12E)-octadecenoic acid and to a mixture of 11- and 12-HPOME, possibly due to reverse orientation of (11Z)-18:1 at the active site compared with oleic acid. The reaction mechanism of the hydroperoxide isomerase suggests catalytic similarities to cytochrome P450.     

Multidimensional profiling of components in complex mixtures of natural products for metabolic analysis,proof of concept: Application to Quillaja saponins

A method for separation and detection of major and minor components in complex mixtures has been developed, utilising two-dimensional high-performance liquid chromatography (2D-HPLC) combined with electrospray ionisation ion-trap multiple-stage mass spectrometry (ESI-ITMSⁿ). Chromatographic conditions were matched with mass spectrometric detection to maximise the number of components that could be separated. The described procedure has proven useful to discern several hundreds of saponin components when applied to Quillaja saponaria Molina bark extracts. The discrimination of each saponin component relies on the fact that three coordinates (x, y, z) for each component can be derived from the retention time of the two chromatographic steps (x, y) and the m/z-values from the multiple-stage mass spectrometry (z_n, n = 1, 2, …). Thus an improved graphical representation was obtained by combining retention times from the two-stage separation with +MS¹ (z₁) and the additional structural information from the second mass stage +MS² (z₂, z₃) corresponding to the main fragment ions. By this approach three-dimensional plots can be made that reveal both the chromatographic and structural properties of a specific mixture which can be useful in fingerprinting of complex mixtures.     

Identification of Novel Genes Involved in Long-Chain n-Alkane Degradation by Acinetobacter sp. Strain DSM 17874

Acinetobacter sp. strain DSM 17874 is capable of utilizing n-alkanes with chain lengths ranging from that of decane (C₁₀H₂₂) to that of tetracontane (C₄₀H₈₂) as a sole carbon source. Two genes encoding AlkB-type alkane hydroxylase homologues, designated alkMa and alkMb, have been shown to be involved in the degradation of n-alkanes with chain lengths of from 10 to 20 C atoms in this strain. Here, we describe a novel high-throughput screening method and the screening of a transposon mutant library to identify genes involved in the degradation of n-alkanes with C chain lengths longer than 20, which are solid at 30°C, the optimal growth temperature for Acinetobacter sp. strain DSM 17874. A library consisting of approximately 6,800 Acinetobacter sp. strain DSM 17874 transposon mutants was constructed and screened for mutants unable to grow on dotriacontane (C₃₂H₆₆) while simultaneously showing wild-type growth characteristics on shorter-chain n-alkanes. For 23 such mutants isolated, the genes inactivated by transposon insertion were identified. Targeted inactivation and complementation studies of one of these genes, designated almA and encoding a putative flavin-binding monooxygenase, confirmed its involvement in the strain's metabolism of long-chain n-alkanes. To our knowledge, almA represents the first cloned gene shown to be involved in the bacterial degradation of long-chain n-alkanes of 32 C's and longer. Genes encoding AlmA homologues were also identified in other long-chain n-alkane-degrading Acinetobacter strains.     

Preconditioning 2D Integer Data for Fast Convex Hull Computations

In order to accelerate computing the convex hull on a set of n points, a heuristic procedure is often applied to reduce the number of points to a set of s points, s ≤ n, which also contains the same hull. We present an algorithm to precondition 2D data with integer coordinates bounded by a box of size p × q before building a 2D convex hull, with three distinct advantages. First, we prove that under the condition min(p, q) ≤ n the algorithm executes in time within O(n); second, no explicit sorting of data is required; and third, the reduced set of s points forms a simple polygonal chain and thus can be directly pipelined into an O(n) time convex hull algorithm. This paper empirically evaluates and quantifies the speed up gained by preconditioning a set of points by a method based on the proposed algorithm before using common convex hull algorithms to build the final hull. A speedup factor of at least four is consistently found from experiments on various datasets when the condition min(p, q) ≤ n holds; the smaller the ratio min(p, q)/n is in the dataset, the greater the speedup factor achieved.     

Highly enantioselective oxidation of phenyl methyl sulfide and its derivatives into optically pure (S)-sulfoxides with Rhodococcus sp. CCZU10-1 in an n-octane–water biphasic system

Enantiopure sulfoxides can be prepared via the asymmetric oxidation of sulfides using sulfide monooxygenases. The n-octane–water biphasic system was chosen for the bio-oxidation of a water-insoluble phenyl methyl sulfide (PMS) by Rhodococcus sp. CCZU10-1. In this n-octane–water system, the optimum reaction conditions were obtained. (S)-phenyl methyl sulfoxide ((S)-PMSO) with >99.9 % enantiomeric excess formed at 55.3 mM in the n-octane–water biphasic system. Using fed-batch method, a total of 118 mM (S)-PMSO accumulated in 1-L reaction mixture after the 7th feed, and no (R)-PMSO and sulfone were detected. Moreover, Rhodococcus sp. CCZU10-1 displayed fairly good activity and enantioselectivity toward other sulfides. In conclusion, Rhodococcus sp. CCZU10-1 is a promising biocatalyst for synthesizing highly optically active sulfoxides.     

Foliar cuticular waxes of cultivated species and varieties of Coffea

The cuticular waxes of leaves of Coffea arabica cv. ‘Catuaí Vermelho’, C. arabica cv. ‘Obatã’, Coffea canephora cv. ‘Apoatã’, Coffea racemosa and two hybrids between C. arabica and C. racemosa were extracted by rapid washing of the surface with chloroform. The waxes were fractionated by thin layer chromatography over silicagel. The fractions of the constituent classes were characterized by infrared spectroscopy and the distribution of the homologs of the n-alkanes and n-primary alcohols was determined by GC/MS and GC/FID. Among the samples analyzed, leaves of C. racemosa have the highest content of foliar wax (22.9 μg cm⁻²). Most samples contain either n-alkanes (C. canephora and C. racemosa) or n-primary alcohols (C. arabica) as predominant wax constituents. The distribution of n-alkanes allowed the distinction of C. racemosa from the other samples; the distribution of alcohols allowed the distinction of the three species. The two hybrids have waxes similar to the wax of C. arabica.     

Evidence for the origin of the unoccupied oestrogen receptor in nuclei of a human breast-cancer cell line (MCF-7)

The origin of the unoccupied nuclear oestrogen receptor (R_n) was studied. Three working hypotheses were investigated. (a) R_n is a dissociation product of the oestrogen occupied nuclear receptor (ER_n). (b) ER_n is only partially occupied, so that additional binding may occur at 0°C (the temperature at which oestradiol saturates unoccupied sites). (c) R_n is derived from the penetration of unoccupied cytoplasmic receptor (R_c) into the nucleus. The MCF-7 cell line was used as a model in the present investigation. The amount of unoccupied receptors was measured by saturation with 7.5nm-[³H]oestradiol at 0°C, whereas the occupied receptors were measured by exchange at 30°C. The cells at preconfluency were exposed to a medium fortified with 10nm-[³H]oestradiol for 1h, washed and cultured up to 5 days in fresh growth medium. The distribution of oestradiol receptors was determined before exposure and during the following 5 days. After 1h exposure only ER_n was found in the nuclear fraction. Thereafter ER_n declined continuously so that on day 5 it approached 15% of its value measured 1h after exposure. Although after 3 days about 80% of ER_n disappeared no R_n appeared, which contradicts hypotheses (a) and (b). On day 4 R_n and R_c appeared simultaneously. The appearance of R_n and R_c was not prevented by culturing the cells in an oestrogen-free medium, supporting hypothesis (c). Exposure of cells to increasing concentration of [³H]oestradiol (0.1–10nm) for 1h resulted in a parallel increase in ER_n without increasing the amount of unoccupied binding sites, which contradicts hypothesis (b). The present study supports the hypothesis (c), i.e., R_c may also penetrate the nucleus without binding to oestradiol.     

Cytogenetics of Alismataceae and Limnocharitaceae: CMA/DAPI banding and 45S rDNA sites

Species belonging to the Alismataceae (Echinodorus) and Limnocharitaceae (Hydrocleys and Limnocharis) families were analysed by banding with CMA/DAPI fluorochromes, C/CMA/DAPI banding, and in situ hybridization (FISH) with probes that recognise 45S rDNA. All species of Echinodorus presented 2n = 22, but only in E. lanceolatus were DAPI+ telomeric bands in seven chromosome pairs observed. A bimodal karyotype and GC-rich heterochromatin preferably located in two smaller acrocentric pairs that generally corresponded to the number of sites of 45S rDNA. A similar pattern of bands was observed in both Limnocharis species (2n = 20), but the two differed with respect to 45S rDNA, with L. laforestii showing only two sites. Hydrocleys nymphoides and H. martii had a chromosome number of 2n = 16, but the position of the GC-rich heterochromatin associated with the satellite differed among chromosomal types. In this work, the cytotaxonomic implications of these patterns are discussed and correlated with previous data from the literature.     

Detection of Renibacterium salmoninarum, the Causative Agent of Bacterial Kidney Disease in Salmonid Fish, from Pen-Cultured Coho Salmon

The detection of Renibacterium salmoninarum antigen from pen-cultured coho salmon was attempted. Flounder (Limanda herzensteini) (n = 24), greenling (Hexagrammos otakii) (n = 5), Japanese sculpin (Cottus japonicus) (n = 1), and flathead (Platycephalus indicus) (n = 22) captured by fishing around coho salmon net pens were examined for the presence of R. salmoninarum antigen by an indirect dot blot assay and by an indirect fluorescent-antibody technique using polyclonal and monoclonal antibodies. R. salmoninarum antigen was detected from kidney samples of one greenling and six flathead. Moreover, 86 scallops (Patinopecten yessoensis) were hung from the edge of the net pen for 50 days, and R. salmoninarum antigen was demonstrated in 31 samples by the indirect dot blot assay and the indirect fluorescent-antibody technique.     

A New Interpretation of the Dynamic Changes of the Potassium Conductance in the Squid Giant Axon

The solutions, n(t), of the differential equation dn/dt = α (1 - n) n (4 - 6n + 4n² - n³) - βn² (4 - 6n + 4n² - n³) in which α and β are instantaneous functions of membrane potential, are shown to fit with good accuracy the time courses of the rise of potassium conductance during depolarizing steps in clamp potential, found experimentally by Hodgkin and Huxley and by Cole and Moore. The equation is derived by analysing the dynamic behaviour of a system consisting of a square array of interacting pores. The possible role of Ca⁺⁺ ions in this system is discussed.     

Validation of a simplified method for muscle volume assessment

The present study investigated the validity of a simplified muscle volume assessment that uses only the maximum anatomical cross-sectional area (ACSA_max), the muscle length (L_M) and a muscle-specific shape factor for muscle volume calculation ( Albracht et al., 2008, J Biomech 41, 2211–2218). The validation on the example of the triceps surae (TS) muscles was conducted in two steps. First L_M, ACSA_max, muscle volume and shape factor were calculated from magnet resonance image muscle reconstructions of the soleus (SO), gastrocnemius medialis (GM) and lateralis (GL) of a group of untrained individuals (n=13), endurance (n=9) and strength trained (n=10) athletes. Though there were significant differences in the muscle dimensions, the shape factors were similar across groups and were in average 0.497±0.026, 0.596±0.030, and 0.556±0.041 for the SO, GM and GL respectively. In a second step, the shape factors were applied to an independent recreationally active group (n=21) to compare the muscle volume assessed by the simplified method to the results from whole muscle reconstructions. There were no significant differences between the volumes assessed by the two methods. In conclusion, assessing TS muscle volume on the basis of the reported shape factors is valid across populations and the root mean square differences to whole muscle reconstruction of 7.9%, 4.8% and 8.3% for SO, GM and GL show that the simplified method is sensitive enough to detect changes in muscle volume in the context of degeneration, atrophy or hypertrophy.