Genetic diversity and genetic structure of populations of Ranunculus japonicus Thunb. (Ranunculaceae)

Abstract In order to clarify the genetic diversity and population structure of Ranunculus japonicus , allozymic analysis was conducted on 60 populations in southwestern Japan. Considerable genetic variati ons were detected among the populations of R. japonicus . The genetic diversities within species ( H _es = 0.215) and within populations ( H _ep = 0.172) were slightly higher than those of other perennial herbs with widespread distribution and outcrossing plants. Significantly higher values of fixation index were detected in some populations, which might have arisen from restricted mating partners. The majority of genetic variation (approx. 80%) resided within a population and a moderate level of genetic differentiation ( G _ST = 0.203) was observed among populations. The F _ST value (0.203) suggests the existence of a substantial population structure in this species. The highly significant correlation between geographic distance and F _ST values indicates that isolation by distance has played an important role in the construction of the genetic structure of this species.     

Floral structure in Licuala peltata (Arecaceae: Coryphoideae) with special reference to the architecture of the unusual labyrinthine nectary

The structure and late development of the flowers of the South‐East Asian bee‐pollinated palm Licuala peltata are described with special focus on the architecture of the unusual labyrinthine nectaries. The nectaries are derived from septal nectaries by extensive convolution of the carpel flank surfaces below the ovary throughout the inner floral base, thus also encompassing the inner surface of the corolla–androecium tube. A comparison with septal nectaries elsewhere in Arecaceae and with labyrinthine nectaries in other monocots shows that labyrinthine nectaries situated below the ovary, as described here, are not known from any other palms, but are similar to those of a few Bromeliaceae and, less strongly convoluted, some Haemodoraceae and Xanthorrhoeaceae. In addition, the substantial participation of parts other than the gynoecium in the nectary architecture of Licuala appears unique at the level of monocots. © 2009 The Linnean Society of London, Botanical Journal of the Linnean Society, 2009, 161 , 66–77.     

Genetic diversity and structure in fragmented populations of the endangered species Ranunculus cabrerensis (Ranunculaceae): implications for conservation

Ranunculus cabrerensis is an endemic and endangered species of the Northwestern Iberian Peninsula. The molecular markers AFLP and ISSR were used to investigate the genetic diversity and population structure of four populations across its known distribution. Fifteen selective primer combinations of AFLP and seventeen ISSR primer combinations produced a total of 2830 and 103 unambiguously repeatable fragments respectively, of which 97.57 and 81.38% were polymorphic for both markers. The genetic diversity of R. cabrerensis at species level was high (H _E = 0.294 by ISSR and H _E = 0.191 by AFLP) and differentiation between sampled locations was also relatively high (G _ST = 0.316 and 0.158 by ISSR and AFLP analysis respectively) compared to other studies of endangered and rare species using the same techniques. The analysis of molecular variance (AMOVA) indicated that the main genetic variation was within sampled locations (73% by AFLP; 52% by ISSR), even though the variation among locations was also significant. Principal Coordinates, NeighborNet and Bayesian analyses revealed a weak but significant relationship between the genetic structures of different populations in R. cabrerensis, with gene flow acting as a homogenizing force that prevents stronger differentiation of populations. Finally, suggestions for conservation strategies to preserve the genetic resources of this species are outlined.     

Genetic diversity among horse populations with a special focus on the Franches-Montagnes breed

Genetic characterization helps to assure breed integrity and to assign individuals to defined populations. The objective of this study was to characterize genetic diversity in six horse breeds and to analyse the population structure of the Franches-Montagnes breed, especially with regard to the degree of introgression with Warmblood. A total of 402 alleles from 50 microsatellite loci were used. The average number of alleles per locus was significantly lower in Thoroughbreds and Arabians. Average heterozygosities between breeds ranged from 0.61 to 0.72. The overall average of the coefficient of gene differentiation because of breed differences was 0.100, with a range of 0.036-0.263. No significant correlation was found between this parameter and the number of alleles per locus. An increase in the number of homozygous loci with increasing inbreeding could not be shown for the Franches-Montagnes horses. The proportion of shared alleles, combined with the neighbour-joining method, defined clusters for Icelandic Horse, Comtois, Arabians and Franches-Montagnes. A more disparate clustering could be seen for European Warmbloods and Thoroughbreds, presumably from frequent grading-up of Warmbloods with Thoroughbreds. Grading-up effects were also observed when Bayesian and Monte Carlo resampling approaches were used for individual assignment to a given population. Individual breed assignments to defined reference populations will be very difficult when introgression has occurred. The Bayesian approach within the Franches-Montagnes breed differentiated individuals with varied proportions of Warmblood.     

The genusNigella (Ranunculaceae) — a taxonomic revision

The genusNigella, burdened with about 80 or more binomials, consists of only 14 acceptable species. A key, notes on the nomenclature, and illustrations are provided. The most polymorphic species isN. arvensis; its races have long been subject to taxonomical controversy and are grouped here into 14 varieties:N. arvensis var.anatolica, var.iranica, and var.simplicifolia are described as new taxa.     

Genetic diversity of Aquilegia (Ranunculaceae) species and cultivars assessed by AFLPs

Species of the genus Aquilegia are exceptionally diverse in their floral morphology and color, commonly known as columbine. They are widely planted ornamentals and are highly attractive for hummingbirds. However, little is known about their genetic diversity. We examined the genetic diversity of the species and cultivars using amplified fragment length polymorphism (AFLP) markers. Sixteen EcoRI/MseI AFLP primer combinations produced 327 informative polymorphic bands, with a mean of 20.4 bands scored per primer. Jaccard's coefficient of similarity varied from 0.61 to 0.93, indicative of high levels of genetic variation. Cluster analysis using the unweighted pair group method with arithmetic mean algorithm placed the 64 accessions into two main clusters, each divided into two sub-clusters. The AFLP variability was significantly associated with the geographic origins, as the Asian species and the North American species grouped into two distinct clusters. The genetic diversity found among Aquilegia demonstrated the potential value of Chinese germplasm for cultivar improvement and for widening the genetic basis of breeding programs and breeding material selection. We concluded that AFLPs are informative and can provide significant insights for genetic diversity research in columbine species.     

Microbial diversity in the tick Argas japonicus (Acari: Argasidae) with a focus on Rickettsia pathogens

The soft tick Argas japonicus mainly infests birds and can cause human dermatitis; however, no pathogen has been identified from this tick species in China. In the present study, the microbiota in A. japonicus collected from an epidemic community was explored, and some putative Rickettsia pathogens were further characterized. The results obtained indicated that bacteria in A. japonicus were mainly ascribed to the phyla Proteobacteria, Firmicutes and Actinobacteria. At the genus level, the male A. japonicus harboured more diverse bacteria than the females and nymphs. The bacteria Alcaligenes, Pseudomonas, Rickettsia and Staphylococcus were common in nymphs and adults. The abundance of bacteria belonging to the Rickettsia genus in females and males was 7.27% and 10.42%, respectively. Furthermore, the 16S rRNA gene of Rickettsia was amplified and sequenced, and phylogenetic analysis revealed that 13 sequences were clustered with the spotted fever group rickettsiae (Rickettsia heilongjiangensis and Rickettsia japonica) and three were clustered with Rickettsia limoniae, which suggested that the characterized Rickettsia in A. japonicus were novel putative pathogens and also that the residents were at considerable risk for infection by tick‐borne pathogens.     

The phylogeny ofActaea (Ranunculaceae): A biogeographical approach

Phylogenetic analyses of the genusActaea were performed using morphological, ecological and biogeographical characters. Using solely morphological characters, the relationships of the three identified species-groups remain uncertain. Close biogeographical examination and comparison of the areas with ecological peculiarities as well as climate data gave important insight into the phylogeny ofActaea and the whole tribe. Consequently, the obtained biogeographical data were used for phylogenetic reconstructions. Both, from the point of view of morphological and biogeographical data,A. pachypoda andA. asiatica are the most ancestral species. They grow on the east sides of the continents, mainly in broad-leaved forests. In West Eurasia the apomorphicA. spicata andA. acuminata occur under similar climatic and ecological conditions, but these species are adapted to another climate rhythm. The most advanced species (A. erythrocarpa, A. rubra) are to be found in the boreal forests where they are widely distributed. This biogeographical approach revealed that the evolution of the species led to a gradual widening and shifting of their ecological constitutions.     

Genetic diversity in Delphinium variegatum (Ranunculaceae): a comparison of two insular endemic subspecies and their widespread mainland relative

Delphinium variegatum is subdivided into three subspecies: D. v. variegatum is widespread in central and northern California, while D. v. kinkiense (an endangered taxon) and D. v. thornei are endemic to San Clemente Island off the coast of southern California. Electrophoretic data for 19 loci were collected from 7 populations of the mainland subspecies and all 24 known populations of the two insular endemic subspecies. Populations of the widespread mainland subspecies have more polymorphic loci (33.6% vs. 24.5%) and more alleles per polymorphic locus (2.61 vs. 2.15) than the insular endemic subspecies. However, observed heterozygosities are lower in the mainland subspecies (0.041 vs. 0.071), presumably due to lower levels of outcrossing (t = 0.464 vs. 0.895). Expected heterozygosities are similar (0.064 vs. 0.074) due to lower alternative allele frequencies in populations of the mainland subspecies (mean q = 0.075 vs. 0.190). Populations of the two insular subspecies are almost equivalent genetically (mean I = 0.997) regardless of taxonomic designation or geographic location. In contrast, one of the mainland populations is genetically well differentiated from the others. If this exceptional population is excluded, the mainland subspecies partitions genetic diversity similarly to the island subspecies, with most variation being found within populations (G(ST) = 0.073 vs. 0.030).     

The annual species ofAdonis (Ranunculaceae)—a polyploid complex

The five annual species ofAdonis L., sect.Adonis, growing in Israel, form a series of diploid, tetraploid and hexaploid species. Their somatic chromosome numbers are 2n = 16 inA. annua L.,A. dentata Del. andA. palaestina Boiss., 2n = 32 inA. microcarpa DC., 2n = 48 inA. aestivalis L.; counts forA. dentata, A. palaestina andA. microcarpa are new records. There are indications that alloploidization may have been involved in the process of speciation in sect.Adonis. A taxonomic survey of the 8 species of the section reveals that a higher ploidy level is usually combined with a larger distribution area.     

Cnidaria from the Croker passage (Antarctic Peninsula) with a special focus on Siphonophorae

Studies of “gelatinous” zooplankton are rather rare, and little is known about the biology and ecology of Antarctic Cnidaria, especially for siphonophores. More investigations are necessary for complementing the current information on the “gelatinous” zooplankton inhabiting this important but little know biogeographical region, especially because siphonophores very likely play a significant role in the Antarctic food chains. The species composition, abundance and vertical distribution of planktonic cnidarians in the Croker Passage were evaluated using the data obtained from three expeditions. Zooplankton were sampled with a double plankton net between 0 and 1,200 m water depth in both summer and winter seasons. In total, ten species of siphonophores and four species of medusae were identified. Siphonophore assemblages were dominated by Dimophyes arctica, Pyrostephos vanhoeffeni, and Diphyes dispar. D. arctica and D. dispar occurred in greatest numbers in summer, mainly in the upper mesopelagic zone. P. vanhoeffeni, a cryophilic species, occurred most abundantly in winter (in the lower mesopelagic zone), when they probably reproduce. Restricted circulation from the Bellingshausen Sea over the continental shelf into Croker Passage may exclude the deeper-living oceanic fauna from the area of investigation, as indicated by the low abundances of Crystallophyes amygdalina, Muggiaea sp., and Heteropyramis spp. Four species of medusae were identified. The highest abundance was noted for Solmundella bitentaculata and Arctapodema sp. These occurred most abundantly in the middle (January) and end (April) of summer.     

Genetic structure and evolution of Alpine polyploid complexes: Ranunculus kuepferi (Ranunculaceae) as a case study

The alpine white-flowered buttercup, Ranunculus kuepferi Greuter & Burdet, is a polyploid complex with diploids endemic to the southwestern Alps and polyploids – which have been previously described as apomictic – widespread throughout European mountains. Due to the polymorphic status of both its ploidy level and its reproductive mode, R. kuepferi represents a key species for understanding the evolution of polyploid lineages in alpine habitats. To disentangle the phylogeography of this polyploid taxon, we used cpDNA sequences and AFLP (amplified fragment length polymorphism) markers in 33 populations of R. kuepferi representative of its ploidy level and distribution area. Polyploid individuals were shown to be the result of at least two polyploidization events that may have taken place in the southwestern Alps. From this region, one single main migration of tetraploids colonized the entire Alpine range, the Apennines and Corsica. Genetic recombination among tetraploids was also observed, revealing the facultative nature of the apomictic reproductive mode in R. kuepferi polyploids. Our study shows the contrasting role played by diploid lineages mostly restricted to persistent refugia and by tetraploids, whose dispersal abilities have permitted their range extension all over the previously glaciated Alpine area and throughout neighbouring mountain massifs.     

A Study on Dichocarpum (Ranunculaceae)

The genus Dichocarpum was established by W. T. Wang and Hsiao in 1964, who divided the genus into 2 sections: Sect. Dichocarpum including 10 species distributed on the mainland of E. Asia, and Sect. Hutchinsonia including 9 species native to Japan. M. Tamura and L. A. Lauener made a revision of the genus in 1968, who divided the genus into 4 sections, three for the species of the mainland of E. Asia, including 3 series and 10 species, and the other for the species of Japan, including 2 subsections, 3 series and 9 species. In the present paper, the genus is divided into 2 sections and 6 series, including 15 species and 3 varieties, and a putative phylogeny of the genus is proposed. The genus may be close to the genus Asteropyrum, and these two genera are rather specialized in Thalictroides (Ranunculaceae), because they have three very similar characters: the petal with a long claw, the stephanocolpate pollen and the chromosome morphology. The genus has 2n=24, 35(36?), which indicates that its basic number is X=6, and the species on the mainland of E. Asia (Sect. Dichocarpum) may well be paleotetraploids, whereas those in Japan (sect. Hutchinsonia) are paleohexaploids. Most of the advanced species are distributed in Japan and the most primitive ones in China and the Himalayas, the distribution pattern seggests that the Japanese members of this genus might have immigrated from China in the Tertiary, and differentiated and evolved there. The putative phylogeny of the genus is shown in Fig. 2 (at series level)     

Comparative account of nectary structure in Hexisea imbricata (Lindl.) Rchb.f. (Orchidaceae)

• Background and Aims Despite the number of orchid speciesthat are thought to be pollinated by hummingbirds, our knowledgeof the nectaries of these orchids is based solely on a singlespecies, Maxillaria coccinea (Jacq.) L.O. Williams ex Hodge.Nevertheless, it is predicted that such nectaries are likelyto be very diverse and the purpose of this paper is to comparethe nectary and the process of nectar secretion in Hexisea imbricata(Lindl.) Rchb.f. with that of Maxillaria coccinea so as to beginto characterize the nectaries of presumed ornithophilous Neotropicalorchids. • Methods Light microscopy, transmission electronmicroscopyand histochemistry were used to examine the histology and chemicalcomposition of nectary tissue and the process of nectar secretionin H. imbricata. • Key Results and Conclusions The nectary of H. imbricatahas a vascular supply, is bound by a single-layered epidermiswith few stomata and comprises two or three layers of subepidermalsecretory cells beneath which lie several layers of palisade-likeparenchymatous cells, some of which contain raphides or mucilage.The secretory cells are collenchymatous and their walls havenumerous pits with associated plasmodesmata. They contain thefull complement of organelles characteristic of secretory cellsas well as intravacuolar protein bodies but some of the secretoryepidermal cells, following secretion, collapse and their anticlinalwalls seem to fold. Nectar secretion is thought to be granulocrineand, following starch depletion, lipid droplets collect withinthe plastids. The nectar accumulates beneath the cuticle whichsubsequently forms swellings. Finally, nectar collects in thesaccate nectary spur formed by the fusion of the margins ofthe labellum and the base of the column-foot. Thus, althoughthe nectary of H. imbricata and M. coccinea have many featuresin common, they nevertheless display a number of important differences.     

The pollination ecology of Actaea spicata (Ranunculaceae)

Pollination ecology of Actaea spicata L. (Ranunculaceae) was studied at localities ranging from deciduous to spruce forest. The species is self–incompatible and possibly facultatively apomictic. No anemogamy seems to occur. In deciduous forest, the plant is primarily pollinated by pollen–foraging and mate–searching Byturus ochraceus (Scriba) (Coleoptera). It flowers during a period between emergence of the beetle and onset of anthesis of the prime pollen source and only larval host plant, Geum ur–banum L. (Rosaceae). The beetles sit on the suitably long anther filaments or on top of the stigma. Floral morphology promotes pollination–performing movements by the beetle. The complex floral fragrance seems to induce close–range behaviour, i.e. alighting and/or foraging. Flies become abundant visitors only shortly before anthesis is over, and their contribution is small. Large syrphids are relatively effective as pollinators, since they grasp the stamens near the base and often touch the stigma with pollen–dusted parts of their bodies. Due to lack of its food–plant, B. ochraceus is absent at spruce forest localities and northwards. At these localities flowering is delayed until the main fly appearance, and the flowers are heavily pollinated by several syrphids and muscids. At three deciduous–forest localities a second flowering took place with new, juxtaposed inflorescences on separate stalks. The distribution of such inflorescences within the population along with the distribution and abundance of pollinators among the two generations of flowers suggest that these inflorescences occur as a response to low rate of pollination in the first anthesis.     

Elevational patterns of functional diversity and trait of Delphinium (Ranunculaceae) in Hengduan Mountains,China

Elevational patterns of trait occurrence and functional diversity provide an important perspective for understanding biodiversity. However, previous studies have mostly examined functional diversity at the community scale. Here, we examined large-scale patterns of trait occurrence and functional diversity in Delphinium along an elevational gradient from 1000 to 5700 m in the Hengduan Mountains, SW China. Elevational distribution and trait data of 102 Delphinium species were compiled to evaluate the patterns of interspecific traits, species richness, and functional diversity. We found that the distribution of species richness showed a unimodal curve that peaked between 3500 and 4000 m; functional diversity and traits showed different patterns along an elevational gradient. The functional diversity increased at a lower rate along an elevation gradient, whereas species richness continued to increase. Species with large ranges and non-endemic species were most affected by geometric constraints. Richness of species endemic to the Hengduan Mountains peaked at higher elevations, likely due to increased speciation and restricted dispersion under alpine conditions. We conclude that the middle elevation region is not only the functionally richest but also the most functionally stable region for Delphinium, which could be insurance against environmental change. Extreme conditions and strong environmental filters in an alpine environment may cause the convergence of species traits, which could relate to reducing nutrient trait investment and increasing reproductive trait investment. We conclude that large-scale studies are consistent with previous studies at the community scale. This may indicate that the relationship between functional diversity and species richness across different scales is the same.     

铁线莲属研究随记(Ⅴ)

(1)描述了9新种,4新变种;做出了2新等级,1新组合和1新名称。(2)归并了以下拉丁学名： Clematis dioica L．ssp．virginiana(L．)Kuntze var．bahamica Kuntze,C．bahamica (Kuntze) Britton,C．orbic- ulata Correll,C．brasiliana DC．var．laxa St．Hilaire,C．perulata Kuntze,C．barranacae Jones,C．discolor Gardn., C．laxiflora Baker,C．bathiei Lévl．和C．mauritiana Lam．var．sulfurea Viguier &; Perrier。(3)对威灵仙C．chinensis Osbeck的5个变种进行了分类;特产日本的C．fujisanensis Hisauti &; Hara与C.chinensis 极为相近,主要区别在于具较大的花,但有时花与C.chinensis的花同样大,由于区别不大,在本文中被 降级作变种处理;与其近缘、具强烈退化花序、特产华东的C．anhweiensis M．C．Chang也随之被处理为 变种。(4)瑞典学者Johnson在最近出版的铁线莲属专著中将特产西印度群岛东部的C．Flukenetii DC． 归并于特产美国东南部的C．catesbyana Pursh;本文不同意他做出的归并,并列出了这两个种的明显区 别特征,确认后者是一个应该得到承认的独立的种。(5)根据墨西哥标本描述的C．acapulcensis Hook． &; Arn．原知分布于中美一带,而其在南美的居群和一小叶多毛的新变种(var．puberula)过去长期间被误 定为其近缘种C．affinis St．Hilaire;这个混乱在本文中得到澄清,同时,本文给出了这二近缘种的区别 特征。(6)Viguier和Perrier两位学者在上世纪四十年代末研究马达加斯加一带的黄花铁线莲组-怀特铁 线莲亚组(sect．Meclatis subsect．Wightianae)植物时做出了不少错误鉴定：(a)将特产马达加斯加的具三 出复叶的C．mauritiana Lam. var．mauritiana,var．coriacea和C．microcuspis Baker,以及具单叶的C．ac- tinostemmatifolia W．T．Wang均鉴定为分布于非洲大陆的C．simensis Fresen., 并将后者作为分布于亚洲和欧洲的C．orientalis L．的亚种处理;(b)将特产马达加斯加具三出复叶的C．laxiflora Baker和具一回羽状复叶的C．ibarensis Baker鉴定为特产印度南部的C．wightiana Wall.,也将后者作为C．orientalis的亚种处理;(c)将特产科摩罗(Comoros)具二回羽状复叶的C．comoresensis W．T. Wang鉴定为C．brachiata Thunb.,也将后者作为C．orientalis L．的亚种处理;(d)将C．ibarensis Baker(具一回羽状复叶和两性花)这一拉丁学名用在了另一特产马达加斯加具2～3回羽状复叶和单性花、应属于单性铁线莲组sect． Aspidanthera的种(C．rutoides W．T．Wang)之上;(e)将另一特产马达加斯加具一回羽状复叶和单性花、 也属于单性铁线莲组的C．edentata Baker(＝C．insidiosa Baill．)降级作为这两位学者曲解的C．ibarensis Baker的亚种处理;(f)将特产马达加斯加的C．dissecta Baker归并到属于茴芹叶铁线莲组(sect． Pseudanemone)的C．pimpindllifolia Hook．中。此次本文第五部分继去年第一、二部分之后对上述混乱情况做出了完全澄清,并给出了分布于马达加斯加及其邻近岛屿的怀特铁线莲亚组8种植物的检索表;由于C．ibarensis Baker的定义被上述两位学者严重误解,本文根据较多具花、果的标本写出了此种完整、正确的形态描述。