初生根伸长对环境响应的数学模型

在根组织细胞分裂和细胞体积增大亚过程基础上,建立了一个综合根生长特征参数和环境影响在内的单根伸长的数学模型,同时实验观测了大豆根在不同的环境水势下的生长过程。模型计算结果与实验结果吻合较好。最后利用模型探讨了根伸长对环境因子变化的响应,以及根内水势分布。     

大麦根边缘细胞发育的生物学特性

FDA—PI(fluorescein diacetate-propidium iodide)检测结果表明,在大麦种子萌发过程中,根边缘细胞(border cells)活性约为95％。0．5mol/L甘露醇有利于离体边缘细胞的生存。第一个边缘细胞几乎与初生根根尖同步出现,当根长为20—25mm时,边缘细胞数目达到最大值(约1400);移去全部边缘细胞48h后,又有新的边缘细胞形成。与25℃相比,15和35℃明显抑制根的伸长,但不明显抑制边缘细胞的发育。在边缘细胞诱导和发育过程中,边缘细胞的游离与根冠果胶甲基酯酶活性有密切的正相关性。     

Root Border Cell Development is a Temperature-Insensitive and Al-Sensitive Process in Barley

The above article appeared in Plant and Cell Physiology 45(6):751–760 (2004). Fig. 5 in the printed and pdf versionsof     

Hyphal Elongation of Glomus fasciculatus in Response to Root Exudates

The spore germination rates on water agar of the vesicular-arbuscular mycorrhizal fungus Glomus fasciculatus were highest at water potentials of −4 to −6 bars. Root exudates from plants grown in a sterile nutrient solution, with or without phosphorus, did not affect germination. Root exudates collected from 2-, 4-, and 6-week-old Trifolium repens cv. `Ladino' seedlings that were deprived of P enabled hyphal growth from germinated Glomus fasciculatus spores of 21.4, 14.7, and 7.6 mm, respectively. Hyphal elongation in the presence of exudates from plants grown with P, or in the absence of exudates, was negligible (<1 mm). Root P at 2 weeks was not significantly different between plants grown with and without P. There were no significant differences between the quantities of exudates from plants grown with or without P at 2, 4, and 6 weeks. The data suggest that it is the quality of exudates from plants experiencing P deprivation that is important in stimulating vesicular-arbuscular mycorrhizal hyphal elongation.     

Mixture toxicity of copper and zinc to barley at low level effects can be described by the Biotic Ligand Model

Background and aims

The biotic ligand model (BLM) is a bioavailability model for metals based on the concept that toxicity depends on the concentration of metal bound to a biological binding site; the biotic ligand. Here, we evaluated the BLM to interpret and explain mixture toxicity of metals (Cu and Zn).

Methods

The mixture toxicity of Cu and Zn to barley (Hordeum vulgare L.) was tested with a 4 days root elongation test in resin buffered nutrient solutions. Toxicity of one toxicant was tested in presence or absence of a low effect level of the other toxicant or in a ray design with constant toxicant ratios. All treatments ran at three different Ca concentrations (0.3, 2.2 and 10?mM) to reveal ion interaction effects.

Results

The 50 % effect level (EC50) of one metal, expressed as the free ion in solution, significantly (p?<?0.05) increased by adding a low level effect of the other metal at low Ca. Such antagonistic interactions were smaller or became insignificant at higher Ca levels. The Cu EC10 was unaffected by Zn whereas the Zn EC10 increased by Cu at low Ca. These effects obeyed the BLM combined with the independent action model for toxicants.

Conclusions

The BLM model explains the observed interactions by accounting for competition between both metals free ions and Ca²⁺ at the Cu and Zn biotic ligands. The implications of these findings for Cu/Zn interactions in soil are discussed.     

Predicting Ligand Binding Affinity with Alchemical Free Energy Methods in a Polar Model Binding Site

We present a combined experimental and modeling study of organic ligand molecules binding to a slightly polar engineered cavity site in T4 lysozyme (L99A/M102Q). For modeling, we computed alchemical absolute binding free energies. These were blind tests performed prospectively on 13 diverse, previously untested candidate ligand molecules. We predicted that eight compounds would bind to the cavity and five would not; 11 of 13 predictions were correct at this level. The RMS error to the measurable absolute binding energies was 1.8 kcal/mol. In addition, we computed “relative” binding free energies for six phenol derivatives starting from two known ligands: phenol and catechol. The average RMS error in the relative free energy prediction was 2.5 kcal/mol (phenol) and 1.1 kcal/mol (catechol). To understand these results at atomic resolution, we obtained x-ray co-complex structures for nine of the diverse ligands and for all six phenol analogs. The average RMSD of the predicted pose to the experiment was 2.0 Å (diverse set), 1.8 Å (phenol-derived predictions), and 1.2 Å (catechol-derived predictions). We found that predicting accurate affinities and rank-orderings required near-native starting orientations of the ligand in the binding site. Unanticipated binding modes, multiple ligand binding, and protein conformational change all proved challenging for the free energy methods. We believe that these results can help guide future improvements in physics-based absolute binding free energy methods.     

Development of Sulfate Uptake Capacity and ATP-Sulfurylase Activity during Root Elongation in Maize

Sulfate uptake capacity and ATP-sulfurylase activity were determined in maize roots (Zea mays L. var. XL 363 and mutant XL 363 o2) at increasing root length. The pattern of uptake showed a close similarity to that of ATP-sulfurylase, both activities reaching the maximum level at 9 and 10 cm root length in the XL 363 and XL 363 o2 hybrids, respectively. In addition to the shift of the maximum, opaque-2 mutation caused an enhancement of the two activities at root length below and above the activity peak. The kinetic parameter of uptake, Km, showed a maximum at 3 to 4 and a minimum at 7 to 8 cm. The isoenzyme pattern of ATP-sulfurylase was the same in the two hybrids and did not change with root elongation. A common regulatory mechanism is postulated for uptake and activation of sulfate. The kinetic behavior is interpreted as an index of flexibility of the transport system toward different nutrient status of the environment.     

Chlorsulfuron Reduces Extension of Wheat Root Tips in Low-zinc Solution Culture

Root tip extension was used as a measure of wheat root responseto exposure to the sulfonylurea herbicide chlorsulfuron. Plantspre-grown in low-zinc (0.2 µMZnHEDTA) solutions were placedin a perspex chamber with nutrient solution on both sides ofa partition separating the root tip from the rest of the plant.The root tip was exposed to different concentrations of chlorsulfuronand observations were made during 22 h. Increasing the concentrationof zinc in the solution around the root tip to 4 µMZnHEDTAdid not alter root tip extension in the absence of chlorsulfuron.Significant decreases in root growth after 22 h were obtainedwith concentrations of 120 µg chlorsulfuron l^-1and greater.Increasing the Zn concentration from 0.2 to 20 µMZnHEDTAin the nutrient solution around the root tip decreased controlroot growth but stimulated chlorsulfuron-treated roots to extendat the same rate as chlorsulfuron-free control plants. AddingZn and chlorsulfuron to the more mature root parts above theroot tip partition did not significantly influence root tipextension. It is concluded that chlorsulfuron inhibits wheatroot growth and that increased Zn concentrations can alleviateor prevent the deleterious effects of chlorsulfuron.Copyright1998 Annals of Botany Company Wheat,Triticum aestivumL., chlorsulfuron, root growth, zinc.     

Effects of Chronic Waterborne and Dietary Metal Exposures on Gill Metal-Binding: Implications for the Biotic Ligand Model

The biotic ligand modeling (BLM) approach has gained recent widespread interest among the scientific and regulatory communities because of its potential for developing ambient water quality criteria (AWQC), which are site-specific, and in performing aquatic risk assessment for metals. Currently, BLMs are used for predicting acute toxicity (96?h LC50 for fish) in any defined water chemistry. The conceptual framework of the BLM has a strong physiological basis because it considers that toxicity of metals occurs due to the binding of free metal ions at the physiologically active sites of action (biotic ligand, e.g., fish gill) on the aquatic organism, which can be characterized by conditional binding constants (log K) and densities (B_max). At present, these models assume that only water chemistry variables such as competing cations (e.g., Na⁺, Ca²⁺, Mg²⁺, and H⁺), inorganic ligands (e.g., hydroxides, chlorides, carbonates), and organic ligands (dissolved organic matter) can influence the bioavailability of free metal ions and thereby the acute toxicity of metals. Current BLMs do not consider the effects of chronic history of the fish in modifying gill-metal binding characteristics and acute toxicity. Here, for Cu, Cd, and Zn, we review a number of recent studies on the rainbow trout that describe significant modifying effects of chronic acclimation to waterborne factors (hardness and chronic metal exposure) and dietary composition (metal and essential ion content) on gill metalbinding characteristics (on both log K and B_max) and on acute toxicity. We conclude that the properties of gill-metal interaction and toxicological sensitivity appear to be dynamic rather than fixed, with important implications for further development of both acute and chronic BLMs. Now that the initial framework of the BLM has been established, future research needs a more integrative approach with additional emphasis on the dynamic properties of the biotic ligand to make it a successful tool for ecological risk assessment of metals in the natural environment.     

The Effect of Copper Toxicity on the Growth and Root Morphology of Rhodes Grass (Chloris gayana Knuth.) in Resin Buffered Solution Culture

A solution culture experiment was conducted to examine the effect of Cu toxicity on Rhodes grass (Chloris gayana Knuth.), a pasture species used in mine-site rehabilitation. The experiment used dilute, solution culture to achieve external nutrient concentrations, which were representative of the soil solution, and an ion exchange resin to maintain stable concentrations of Cu in solution. Copper toxicity was damaging to plant roots, with symptoms ranging from disruption of the root cuticle and reduced root hair proliferation, to severe deformation of root structure. A reduction in root growth was observed at an external Cu concentration of < 1 μM, with damage evident from an external concentration of 0.2 μM. Critical to the success of this experiment, in quantitatively examining the relationship between external Cu concentration and plant response, was the use of ion exchange resin to buffer the concentration of Cu in solution. After some initial difficulty with pH control, stable concentrations of Cu in solution were maintained for the major period of plant growth. The development of this technique will facilitate future investigations of the effect of heavy metals on plants.     

大麦幼苗根系液泡膜质子泵对苗的发育和盐胁迫的响应

大麦种子露白后52h的根和芽鞘中V－PPase的水解和质子转运活性较高,并随着幼苗的生长进程而下降,V－ATPase活性逐渐增强,用NaCl处理20d龄的大麦幼苗后,耐盐品种根系的V－PPase活性升高,而不耐盐品种则下降,NaCl对离体膜徵囊V－PPase活性有抑制作用。     

The Use of a Simple Dynamic Model to Interpret the Phosphate Response of Plants Grown in Solution Culture

A previously published dynamic model of P uptake and plant growthhas been applied to two sets of solution culture data: thoseof Rorison (1968) for two contrasting wild species, and thoseof Brewster, Bhat and Nye (1975) for onions. Apart from thelogistic constants describing the growth curves of plants withadequate P, all other constants were independently obtainedand assumed to be the same for all species. Plant weights, Pconcentrations and solution P concentrations are all reasonablywell simulated by the model for both experiments. The big differencein responsiveness between fast- and slow-growing species inRorison's experiment is shown to be attributable to differentialdepletion of the solutions. The use of simulation models whichincorporate the depletion of the growing medium might be regardedas an alternative to attempting to eliminate depletion in suchexperiments.     

Ethylene and Gibberellin: Regulation of Internodal Elongation and Nodal Root Development in Floating Rice

Ethylene and GA₃ stimulated internodal elongation in the excisedstem sections of floating rice. The combined application ofethylene and GA₃ exerted a cooperative effect on internodalelongation, although the effect was variety dependent. Stimulativeeffect of ethylene on internodal growth in intact floating riceplants was virtually absent when the plants were pre-treatedwith Ancymidol, -cyclopropyl--(4-methoxyphenyl)-5-pyrimidinemethanol, an inhibitor of gibberellin biosynthesis. Submergenceof intact plants, which also induced internodal elongation,had no stimulative effect when the plants were pre-treated withAncymidol. Submergence of intact plants increased the endogenousgibberellin level. The internode of young, intact 9 day oldseedlings responded neither to submergence nor ethylene, butwhen seedlings were pre-treated with GA₃ they responded to eitherone. Nodal root development was also enhanced by either ethyleneor GA₃. Combined application of ethylene and GA₃ exerted a co-operativeeffect on nodal root development. Ancymidol-treated plants didnot produce nodal roots even though they were subjected to submergence,whereas nontreated control plants produced nodal roots normally. (Received September 12, 1984; Accepted February 15, 1985)     

Water Uptake by Different Regions of the Barley Root. Pathways of Radial Flow in Relation to Development of the Endodermis

The water uptake by different lengths of lateral roots and 1.0cm or 5.0 cm lengths of the seminal axes from differentregionsof the root were measured in potometers with the shoot in airat two humidity regimes. A model of the contribution by thesedifferent regions of the root to the total water absorptionby the plant agreed well with measurements of water uptake bythe whole root system. According to this model, about one halfof the water taken up by the main axis came from the older suberizedregions further than 10 cm from the tip, and together with itsassociated lateral roots this region provided 75% of the totalwater transpired. The development of State III endodermal cellswas correlated with decreases in both the water uptake by theolder regions of the root and the translocation of calcium.Thus in the younger regions of the root where water uptake ismaximal, the flow of water is principally apoplastic althoughthere is also likely to be flow via the symplast Despite a 43%difference in transpirational demand between the two humiditytreatments, the leaf water potentials remained constant, implyinga change in root resistance. This change in resistance mightbe explained if there were an apoplastic pathway within thesuberin lamellae of State III endodermal cells. The responseto the increased transpirational demand is met by the olderregions of the root, in particular by the zone of lateral emergencewhere an apoplastic pathway is known to exist as the Casparianband in the endodermis breaks down with the emergence of thelateral roots. Key words: Endodermis, Pathways, Water Uptake     

Effects of lodine in Various Formulations on the Growth of Barley and Pea Plants in Nutrient Solution Culture

The forms of iodine added to cultures of barley were potassiumiodide, potassium iodate, potassium periodate, and iodoaceticacid at iodine concentrations of 1.0 ppm and 10.0 ppm. Withpea, only iodide and iodate at 1.0 ppm iodine concentrationwere used. For both species, comparisons were made with culturesto which no iodine was added. In barley, growth was increased by 1.0 ppm iodine, the relativeeffectiveness of the different formulations being in the order:iodoacetic acid > iodide > iodate > periodate. With10.0 ppm, iodide and iodoacetic acid treatments gave reducedgrowth, iodate was without effect, and periodate enhanced growth. In pea, 1.0 ppm iodine was inhibitory, iodide being more toxicthan iodate. Analysis of dry matter showed iodine content according to treatmentto be in the order: iodide > iodoacetic acid > iodate> periodate     

Carbon Partitioning in Split Root Systems of Barley: Relation to Metabolism

We tested four hypotheses for the control of partitioning ofphotoassimilated C-11 between the two halves of split root systemsof young barley plants. Our data supported the hypothesis thatphloem is unloaded without the use of metabolic energy, sinceseveral metabolic inhibitors applied to one half of a splitroot system reduced respiratory oxygen uptake without alteringimport of C-11. The hypothesis that rate of import C-11 is directlyrelated to metabolic activity in the root was rejected, since(a) certain inhibitors reduced respiration but not import and(b) exogenous sucrose reduced import into the root half to whichit was supplied. Our data were consistent with the hypothesisthat import is related to the total ability (metabolism plusstorage) of the sink to use sucrose. Treatments that would haveled to greatly decreased use of sucrose (iodoacetate inhibition)decreased import before those which would have led to a smallerdecrease in sucrose use (FCCP inhibition). These data, and thereduction in import to a root half supplied exogenously withsucrose, supported the hypothesis that the size of soluble sugarpools within the roots is, in the short-term, inversely proportionalto rate of import, the soluble sugar pools thus acting as amediator between rate of sucrose use and supply from the phloem.     

Nitrate Reduction in the First Leaf and Roots of Barley Seedlings Grown in Sand and in Culture Solution

The in vivo method has been used to determine activity of nitratereductase in Hiproly and Proctor barley. Differences in activitybetween the cultivars were small and less than those due togrowing conditions. Activity in plants grown in culture solutionwas greater than that for sand-grown plants, especially in theroot The in vivo method gave values for nitrate reductase activitywhich are less than those found by the in vitro method, andevidence is presented to show that the in vivo method underestimatesthe rate of formation of organic nitrogen in barley seedlings.It is shown that significant nitrate reductase activity occursin roots but it is nevertheless concluded that the main siteof nitrate assimilation is in the leaves of this material.     

Predicting the pathway involved in post-translational modification of Elongation factor P in a subset of bacterial species

Background  

The bacterial elongation factor P (EF-P) is strictly conserved in bacteria and essential for protein synthesis. It is homologous to the eukaryotic translation initiation factor 5A (eIF5A). A highly conserved eIF5A lysine is modified into an unusual amino acid derived from spermidine, hypusine. Hypusine is absolutely required for eIF5A's role in translation in Saccharomyces cerevisiae. The homologous lysine of EF-P is also modified to a spermidine derivative in Escherichia coli. However, the biosynthesis pathway of this modification in the bacterial EF-P is yet to be elucidated.