Temporal stability of pond zooplankton assemblages

1. A large body of recent theory has recently developed focused on the relationship between the species diversity of competitor assemblages and the temporal stability of total competitor biomass. Many of these models predict that stability can increase with increasing diversity. 2. To explore natural relationships between zooplankton taxonomic diversity and temporal stability of total zooplankton biomass, 18 fishless, permanent ponds located in southern Michigan were surveyed over a 5 month period during a single growing season. 3. Results showed that temporal variability in total zooplankton biomass (measured as the coefficient of variation or CV) decreased with increasing mean zooplankton taxonomic richness. Thus, temporal stability increased with increasing taxonomic richness, consistent with theoretical predictions. 4. Decreases in the CV appeared to be because of portfolio effects (statistical averaging of species’ biomass fluctuations) rather than negative covariances among zooplankton taxa. 5. The CV of zooplankton biomass was also related to several environmental variables, suggesting that taxonomic richness may not be the only mediator of biomass stability. The CV decreased with increasing relative abundance of grazer‐resistant algae (algae >35 μm in size) and the CV increased with increasing pond productivity.     

Scale-Dependence of Processes Structuring Dung Beetle Metacommunities Using Functional Diversity and Community Deconstruction Approaches

Community structure is driven by mechanisms linked to environmental, spatial and temporal processes, which have been successfully addressed using metacommunity framework. The relative importance of processes shaping community structure can be identified using several different approaches. Two approaches that are increasingly being used are functional diversity and community deconstruction. Functional diversity is measured using various indices that incorporate distinct community attributes. Community deconstruction is a way to disentangle species responses to ecological processes by grouping species with similar traits. We used these two approaches to determine whether they are improvements over traditional measures (e.g., species composition, abundance, biomass) for identification of the main processes driving dung beetle (Scarabaeinae) community structure in a fragmented mainland-island landscape in southern Brazilian Atlantic Forest. We sampled five sites in each of four large forest areas, two on the mainland and two on the island. Sampling was performed in 2012 and 2013. We collected abundance and biomass data from 100 sampling points distributed over 20 sampling sites. We studied environmental, spatial and temporal effects on dung beetle community across three spatial scales, i.e., between sites, between areas and mainland-island. The γ-diversity based on species abundance was mainly attributed to β-diversity as a consequence of the increase in mean α- and β-diversity between areas. Variation partitioning on abundance, biomass and functional diversity showed scale-dependence of processes structuring dung beetle metacommunities. We identified two major groups of responses among 17 functional groups. In general, environmental filters were important at both local and regional scales. Spatial factors were important at the intermediate scale. Our study supports the notion of scale-dependence of environmental, spatial and temporal processes in the distribution and functional organization of Scarabaeinae beetles. We conclude that functional diversity may be used as a complementary approach to traditional measures, and that community deconstruction allows sufficient disentangling of responses of different trait-based groups.     

Macroinvertebrates associated with submerged macrophytes: sample size and power to detect effects

When planning and conducting ecological experiments, it is important to consider how many samples are necessary to detect differences among treatments with acceptably high statistical power. An analysis of statistical power is especially important when studying epiphytic macroinvertebrate colonization of submerged plants because they exhibit large plant-to-plant variability. Despite this variability, many studies have suggested that epiphytic macroinvertebrates preferentially colonize plants based on plant architecture type (broad versus dissected leaves). In this study, we calculated the power and number of samples necessary to detect differences in epiphytic macroinvertebrate abundance (numbers and biomass) among five species and two architecture types of macrophytes in a lake in MI, U.S.A. Using power analysis, we found that we had very high power to detect the differences present between macroinvertebrate abundance by architecture type and by macrophyte species (power = 1.000 and 0.994; effect sizes = 0.872 and 0.646, respectively. However, to detect very small differences between the two architecture types and the five plant species, we determined that many more samples were necessary to achieve similar statistical power (effect size = 0.1–0.3, number of samples = 60–527 and 36–310, respectively; power = 0.9). Our results suggest that macroinvertebrate abundance does in fact vary predictably with plant architecture. Dissected-leaf plants harbored higher abundances of macroinvertebrates than broad-leaf plants (ANOVA, density p = 0.001, biomass p < 0.001). This knowledge should allow us to better design future studies of epiphytic macroinvertebrates.     

Biogeographical Boundaries,Functional Group Structure and Diversity of Rocky Shore Communities along the Argentinean Coast

We investigate the extent to which functional structure and spatial variability of intertidal communities coincide with major biogeographical boundaries, areas where extensive compositional changes in the biota are observed over a limited geographic extension. We then investigate whether spatial variation in the biomass of functional groups, over geographic (10′s km) and local (10′s m) scales, could be associated to species diversity within and among these groups. Functional community structure expressed as abundance (density, cover and biomass) and composition of major functional groups was quantified through field surveys at 20 rocky intertidal shores spanning six degrees of latitude along the southwest Atlantic coast of Argentina and extending across the boundaries between the Argentinean and Magellanic Provinces. Patterns of abundance of individual functional groups were not uniformly matched with biogeographical regions. Only ephemeral algae showed an abrupt geographical discontinuity coincident with changes in biogeographic boundaries, and this was limited to the mid intertidal zone. We identified 3–4 main ‘groups’ of sites in terms of the total and relative abundance of the major functional groups, but these did not coincide with biogeographical boundaries, nor did they follow latitudinal arrangement. Thus, processes that determine the functional structure of these intertidal communities are insensitive to biogeographical boundaries. Over both geographical and local spatial scales, and for most functional groups and tidal levels, increases in species richness within the functional group was significantly associated to increased total biomass and reduced spatial variability of the group. These results suggest that species belonging to the same functional group are sufficiently uncorrelated over space (i.e. metres and site-to-site ) to stabilize patterns of biomass variability and, in this manner, provide a buffer, or “insurance”, against spatial variability in environmental conditions.     

Termite mound cover and abundance respond to herbivore‐mediated biotic changes in a Kenyan savanna

Both termites and large mammalian herbivores (LMH) are savanna ecosystem engineers that have profound impacts on ecosystem structure and function. Both of these savanna engineers modulate many common and shared dietary resources such as woody and herbaceous plant biomass, yet few studies have addressed how they impact one another. In particular, it is unclear how herbivores may influence the abundance of long‐lived termite mounds via changes in termite dietary resources such as woody and herbaceous biomass. While it has long been assumed that abundance and areal cover of termite mounds in the landscape remain relatively stable, most data are observational, and few experiments have tested how termite mound patterns may respond to biotic factors such as changes in large herbivore communities. Here, we use a broad tree density gradient and two landscape‐scale experimental manipulations—the first a multi‐guild large herbivore exclosure experiment (20 years after establishment) and the second a tree removal experiment (8 years after establishment)—to demonstrate that patterns in Odontotermes termite mound abundance and cover are unexpectedly dynamic. Termite mound abundance, but areal cover not significantly, is positively associated with experimentally controlled presence of cattle, but not wild mesoherbivores (15–1,000 kg) or megaherbivores (elephants and giraffes). Herbaceous productivity and tree density, termite dietary resources that are significantly affected by different LMH treatments, are both positive predictors of termite mound abundance. Experimental reductions of tree densities are associated with lower abundances of termite mounds. These results reveal a richly interacting web of relationships among multiple savanna ecosystem engineers and suggest that termite mound abundance and areal cover are intimately tied to herbivore‐driven resource availability.     

Shared ancestry influences community stability by altering competitive interactions: evidence from a laboratory microcosm experiment using freshwater green algae

The impact of biodiversity on the stability of ecological communities has been debated among biologists for more than a century. Recently summarized empirical evidence suggests that biodiversity tends to enhance the temporal stability of community-level properties such as biomass; however, the underlying mechanisms driving this relationship remain poorly understood. Here, we report the results of a microcosm study in which we used simplified systems of freshwater microalgae to explore how the phylogenetic relatedness of species influences the temporal stability of community biomass by altering the nature of their competitive interactions. We show that combinations of two species that are more evolutionarily divergent tend to have lower temporal stability of biomass. In part, this is due to negative ‘selection effects’ in which bicultures composed of distantly related species are more likely to contain strong competitors that achieve low biomass. In addition, bicultures of distantly related species had on average weaker competitive interactions, which reduced compensatory dynamics and decreased the stability of community biomass. Our results demonstrate that evolutionary history plays a key role in controlling the mechanisms, which give rise to diversity–stability relationships. As such, patterns of shared ancestry may help us predict the ecosystem-level consequences of biodiversity loss.     

Phylogenetic diversity stabilizes community biomass

Aims The relationship between biodiversity and ecological stability is a long-standing issue in ecology. Current diversity–stability studies, which have largely focused on species diversity, often report an increase in the stability of aggregate community properties with increasing species diversity. Few studies have examined the linkage between phylogenetic diversity, another important dimension of biodiversity, and stability. By taking species evolutionary history into account, phylogenetic diversity may better capture the diversity of traits and niches of species in a community than species diversity and better relate to temporal stability. In this study, we investigated whether phylogenetic diversity could affect temporal stability of community biomass independent of species diversity.Methods We performed an experiment in laboratory microcosms with a pool of 12 bacterivorous ciliated protist species. To eliminate the possibility of species diversity effects confounding with phylogenetic diversity effects, we assembled communities that had the same number of species but varied in the level of phylogenetic diversity. Weekly disturbance, in the form of short-term temperature shock, was imposed on each microcosm and species abundances were monitored over time. We examined the relationship between temporal stability of community biomass and phylogenetic diversity and evaluated the role of several stabilizing mechanisms for explaining the influence of phylogenetic diversity on temporal stability.Important findings Our results showed that increasing phylogenetic diversity promoted temporal stability of community biomass. Both total community biomass and summed variances showed a U-shaped relationship with phylogenetic diversity, driven by the presence of large, competitively superior species that attained large biomass and high temporal variation in their biomass in both low and high phylogenetic diversity communities. Communities without these species showed patterns consistent with the reduced strength of competition and increasingly asynchronous species responses to environmental changes under higher phylogenetic diversity, two mechanisms that can drive positive diversity–stability relationships. These results support the utility of species phylogenetic knowledge for predicting ecosystem functions and their stability.     

Spatial Distribution of a Large Herbivore Community at Waterholes: An Assessment of Its Stability over Years in Hwange National Park,Zimbabwe

The spatial structuring of populations or communities is an important driver of their functioning and their influence on ecosystems. Identifying the (in)stability of the spatial structure of populations is a first step towards understanding the underlying causes of these structures. Here we studied the relative importance of spatial vs. interannual variability in explaining the patterns of abundance of a large herbivore community (8 species) at waterholes in Hwange National Park (Zimbabwe). We analyzed census data collected over 13 years using multivariate methods. Our results showed that variability in the census data was mostly explained by the spatial structure of the community, as some waterholes had consistently greater herbivore abundance than others. Some temporal variability probably linked to Park-scale migration dependent on annual rainfall was noticeable, however. Once this was accounted for, little temporal variability remained to be explained, suggesting that other factors affecting herbivore abundance over time had a negligible effect at the scale of the study. The extent of spatial and temporal variability in census data was also measured for each species. This study could help in projecting the consequences of surface water management, and more generally presents a methodological framework to simultaneously address the relative importance of spatial vs. temporal effects in driving the distribution of organisms across landscapes.     

Effects of eutrophication and snails on Eurasian watermilfoil (Myriophyllum spicatum) invasion

Exotic species can invade and establish new habitats both as a result of their own traits, and as a result of the characteristics of the environment they invade. Here, we show that the abundance of the invasive submerged aquatic plant, Myriophyllum spicatum (Eurasian watermilfoil) is highly dependent on the conditions of the environment in a mesocosm experiment. M. spicatum is allelopathic towards epiphytic algae, and in the absence of algivorous snails, we found that the abundance of both algae and M. spicatum significantly increased with experimentally increased nutrient loading, while the abundance of native submerged macrophytes declined. However, when snails were present, snail biomass increased with increasing nutrient loading, and M. spicatum biomass was consistently low while native submerged macrophyte biomass was consistently high. Our results stress the importance of the interaction between species traits and environmental conditions when considering the invasiveness of certain exotic species and the invasibility of certain environments.     

Plant functional traits improve diversity‐based predictions of temporal stability of grassland productivity

Synthesis The temporal stability of plant production is greater in communities with high than low species richness, but stability also may depend on species abundances and growth‐related traits. Annual precipitation varied by greater than a factor of three over 11 years in central Texas, USA leading to large variation in production. Stability was greatest in communities that were not dominated by few species and in which dominant species rooted shallowly, had dense leaves, or responded to the wettest year with a minimal increase in production. Stability may depend as much on species abundances and functional traits as on species richness alone. Aboveground net primary productivity (ANPP) varies in response to temporal fluctuations in weather. Temporal stability of community ANPP may be increased by increasing plant species richness, but stability often varies at a given richness level implying a dependence on abundances and functional properties of member species. We measured stability in ANPP during 11 years in field plots (Texas, USA) in which we varied the richness and relative abundances of perennial grassland species at planting. We sought to identify species abundance patterns and functional traits linked to the acquisition and processing of essential resources that could be used to improve richness‐based predictions of community stability. We postulated that community stability would correlate with abundance‐weighted indices of traits that influence plant responses to environmental variation. Annual precipitation varied by a factor of three leading to large inter‐annual variation in ANPP. Regression functions with planted and realized richness (species with > 1% of community ANPP during the final four years) explained 32% and 25% of the variance in stability, respectively. Regression models that included richness plus the fraction of community ANPP produced by the two most abundant species in combination with abundance‐weighted values of either the fraction of sampled root biomass at 20–45 cm depth, leaf dry matter content (LDMC), or response to greater‐than‐average precipitation of plants grown in monocultures explained 58–69% (planted richness) and 58–64% (realized richness) of the variance in stability. Stability was greatest in communities that were not strongly dominated by only two species and in which plants rooted shallowly, had high values of LDMC, or responded to the wettest year with a minimal increase in ANPP. Our results indicate that the temporal stability of grassland ANPP may depend as much on species abundances and functional traits linked to plant responses to precipitation variability as on species richness alone.     

Spatial Distribution and Temporal Variance of Fish Communities in the Channelized and Regulated Vltava River (Central Europe)

Spatial distribution and temporal variations of fish communities in a channelized portion of the Vltava River (Central Europe) were investigated from May to October 1992. Fish abundance and species number were collected monthly during diel samples in the main channel and a large oxbow. To determine differences in fish communities we chose the low-flow period when maximal differences in physical environment between habitats are expected. Fish community patterns from the main channel and oxbow differed only in abundance of ecological groups; the main channel had higher abundance of rheophilic species, whereas eurytopic species were more abundant in the oxbow. However, our analysis revealed significant differences in temporal variations between habitats. Fish abundance usually varied unpredictably over day-night periods in the main channel, whereas in the oxbow we observed a pronounced peak in fish abundance from morning to mid-afternoon. Diel changes in fish abundance in the oxbow corresponded to occurrence of low dissolved oxygen during afternoon and night-time periods. The effect of oxygen depletion induced by strong organic pollution limited the oxbow suitability for fishes. Similar habitats are usually occupied by limnophilic and phytophilic species that were absent in our samples. Our results suggested that man-induced high variability of physical environment decreased variability in fish community.     

Environmental and spatial processes influencing phytoplankton biomass along a reservoirs‐river‐floodplain lakes gradient: A metacommunity approach

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Population and community variability in randomly fluctuating environments

The prediction that environmental fluctuations may destabilise populations and yet stabilise aggregate community properties has remained largely untested. We examined population and community stability under constant and fluctuating temperatures in simple planktonic assemblages of differing algal richness. Temperature dependent resource competition produced a highly asymmetric community structure where algal community biomass was dominated by one species. For a given level of species richness, temperature fluctuations induced lower community covariance and thus stabilised community biomass. However, increasing algal species richness increased the variability of population abundance and growth rates, as well as population and community variability. Consumer dynamics were directly destabilised by environmental fluctuations. These results confirm recent theoretical studies suggesting a stabilising effect of environmental fluctuations at the community level. However, they also support the theoretical prediction that increasing species richness may be of limited value for community stability, most especially in asymmetric communities, when competition directly affects population variability.     

Effect of (a)synchronous light fluctuation on diversity,functional and structural stability of a marine phytoplankton metacommunity

Disentangling the mechanisms that maintain the stability of communities and ecosystem properties has become a major research focus in ecology in the face of anthropogenic environmental change. Dispersal plays a pivotal role in maintaining diversity in spatially subdivided communities, but only a few experiments have simultaneously investigated how dispersal and environmental fluctuation affect community dynamics and ecosystem stability. We performed an experimental study using marine phytoplankton species as model organisms to test these mechanisms in a metacommunity context. We established three levels of dispersal and exposed the phytoplankton to fluctuating light levels, where fluctuations were either spatially asynchronous or synchronous across patches of the metacommunity. Dispersal had no effect on diversity and ecosystem function (biomass), while light fluctuations affected both evenness and community biomass. The temporal variability of community biomass was reduced by fluctuating light and temporal beta diversity was influenced interactively by dispersal and fluctuation, whereas spatial variability in community biomass and beta diversity were barely affected by treatments. Along the establishing gradient of species richness and dominance, community biomass increased but temporal variability of biomass decreased, thus highest stability was associated with species-rich but highly uneven communities and less influenced by compensatory dynamics. In conclusion, both specific traits (dominance) and diversity (richness) affected the stability of metacommunities under fluctuating conditions.     

The influence of consumer diversity and indirect facilitation on trophic level biomass and stability

The relationship between species diversity and the stability and production of trophic levels continues to receive intense scientific interest. Though facilitation is commonly cited as an essential underlying mechanism, few studies have provided evidence of the impact that indirect facilitation may have on diversity–ecosystem functioning relationships. In this laboratory study, we examined the effect of zooplankton species diversity on trophic structure (total algal and zooplankton biomass) and temporal stability of total zooplankton biomass. We utilized four species of pond zooplankton grown in either monoculture or in polyculture. When comparing responses in polycultures with responses averaged across monocultures, a positive effect of diversity on total zooplankton biomass was observed. This occurred as a result of positive facilitative effects among competing zooplankton. Daphnia pulex , a biomass dominant in monoculture, was negatively affected by the presence of interspecific competitors. In contrast, Diaphanosoma brachyurum , a species that performed poorly in monoculture, was strongly and positively affected by the presence of interspecific competitors, driving positive diversity effects on total zooplankton biomass. Positive temporal covariances among zooplankton were detected in several polyculture replicates, increasing temporal variability of total zooplankton biomass. However, this destabilizing effect was weak relative to effects of high biomass yields in polyculture which caused temporal biomass variability (as measured by the coefficient of variation) to be lower in polyculture relative to monocultures. Zooplankton diversity effects on total algal biomass were not detected. However, increased zooplankton diversity significantly altered the size structure of algae, increasing the relative abundance of large, grazer-resistant algae.     

BASE: A novel workflow to integrate nonubiquitous genes in comparative genomics analyses for selection

Inferring the selective forces that orthologous genes underwent across different lineages can help us understand the evolutionary processes that have shaped their extant diversity and the phenotypes they underlie. The most widespread metric to estimate the selection regimes of coding genes—across sites and phylogenies—is the ratio of nonsynonymous to synonymous substitutions (dN/dS, also known as ω). Nowadays, modern sequencing technologies and the large amount of already available sequence data allow the retrieval of thousands of orthologous genes across large numbers of species. Nonetheless, the tools available to explore selection regimes are not designed to automatically process all genes, and their practical usage is often restricted to the single‐copy ones which are found across all species considered (i.e., ubiquitous genes). This approach limits the scale of the analysis to a fraction of single‐copy genes, which can be as low as an order of magnitude in respect to those which are not consistently found in all species considered (i.e., nonubiquitous genes). Here, we present a workflow named BASE that—leveraging the CodeML framework—eases the inference and interpretation of gene selection regimes in the context of comparative genomics. Although a number of bioinformatics tools have already been developed to facilitate this kind of analyses, BASE is the first to be specifically designed to allow the integration of nonubiquitous genes in a straightforward and reproducible manner. The workflow—along with all relevant documentation—is available at github.com/for‐giobbe/BASE.     

Biodiversity Increases the Productivity and Stability of Phytoplankton Communities

Global biodiversity losses provide an immediate impetus to elucidate the relationships between biodiversity, productivity and stability. In this study, we quantified the effects of species richness and species combination on the productivity and stability of phytoplankton communities subject to predation by a single rotifer species. We also tested one mechanism of the insurance hypothesis: whether large, slow-growing, potentially-defended cells would compensate for the loss of small, fast-growing, poorly-defended cells after predation. There were significant effects of species richness and species combination on the productivity, relative yield, and stability of phytoplankton cultures, but the relative importance of species richness and combination varied with the response variables. Species combination drove patterns of productivity, whereas species richness was more important for stability. Polycultures containing the most productive single species, Dunaliella, were consistently the most productive. Yet, the most species rich cultures were the most stable, having low temporal variability in measures of biomass. Polycultures recovered from short-term negative grazing effects, but this recovery was not due to the compensation of large, slow-growing cells for the loss of small, fast-growing cells. Instead, polyculture recovery was the result of reduced rotifer grazing rates and persisting small species within the polycultures. Therefore, although an insurance effect in polycultures was found, this effect was indirect and unrelated to grazing tolerance. We hypothesize that diverse phytoplankton assemblages interfered with efficient rotifer grazing and that this “interference effect” facilitated the recovery of the most productive species, Dunaliella. In summary, we demonstrate that both species composition and species richness are important in driving patterns of productivity and stability, respectively, and that stability in biodiverse communities can result from an alteration in consumer functioning. Our findings underscore the importance of predator-prey dynamics in determining the relationships between biodiversity, productivity and stability in producer communities.     

Seasonal progression of diatom assemblages in surface waters of Ryder Bay, Antarctica

Phytoplankton assemblages from seasonally sea-ice covered Ryder Bay (Adelaide Island, Antarctica) were studied over three austral summers (2004–2007), to link sea-ice variability and environmental conditions with algal speciation. Typical of near-shore Antarctic waters, biomass was dominated by large diatoms, although the prymnesiophyte Phaeocystis antarctica was numerically dominant. Although there was considerable interannual variability between main diatom species, high biomass of certain species or species groups corresponded consistently to certain phases of seasonal progression. We present the first documentation of an extensive bloom of the late-season diatom Proboscia inermis in February 2006, accounting for over 90% of diatom biomass. At this time, water column stratification and nutrient drawdown were high relative to other periods of the study, although carbon export was relatively low. Melt water flux in this region promotes well-stratified surface waters and high chlorophyll levels, but not necessarily concurrent increases in export production relative to seasons with lower freshwater inputs.     

Genetic variation over 10,000 years in Ctenomys: comparative phylochronology provides a temporal perspective on rarity, environmental change and demography

An understanding of how ecological traits influence past species response to environmental change can aid our future predictions of species persistence. We used ancient DNA and serial coalescent modelling in a hypothesis-testing framework to reveal differences in temporal genetic variation over 10,000 years for two species of subterranean rodents that currently differ in rarity (abundance, range size and habitat specificity) and mating system, but that reside in the same volcanically active region. Comparative phylochronologic analyses indicated little genetic change and suggest genetic stability in the solitary widespread Ctenomys haigi over thousands of years. In contrast, we found a pattern of haplotypic turnover in the rare and currently endangered Ctenomys sociabilis. Serial coalescent modelling indicated that the best-fit models of microevolutionary change included gene flow between isolated populations for this species. Although C. haigi and C. sociabilis are congeners that share many life history traits, they have behavioural, habitat-preference and population-size differences that may have resulted in contrasting patterns of temporal variation during periods of environmental change.     

Effect of Environmental and Temporal Factors on Patterns of Rarity of Ephemeroptera in Stream of the Brazilian Cerrado

Patterns of species’ abundance and occurrence over time and space allow division of species into (i) common species, which are abundant, but have a low diversity, and (ii) rare species, which are far more diverse and less abundant. Understanding the relationships among these two species groups and how they are affected by environmental conditions is a major challenge for ecologists, especially considering the distinction between local environmental factors and regional factors and variations in abundance over the course of the year. In this study, we focused on the long-term relationship between the abundance of rare and common ephemeropterans and abiotic factors on local and regional scales. Our hypotheses are that common species will be affected primarily by regional environmental variables (i), whereas rare species will be influenced more by temporal variation (ii). Together, both local and regional abiotic variables, plus temporal variation, best explained the abundance of the common species, whereas temporal variation was the best predictor of rare species. Considering the theoretical aspects and the empirical evidence, we discuss the results based on the plasticity of the common species and the life cycle of the rare ones. We believe that our findings reinforce the need for the deconstruction of communities for a deeper understanding of their relationships with abiotic variables and, in particular, the specific aspects of these relationships in the context of the different guilds of the community.