Multiscale assessment of the influence of habitat structure and composition on bird assemblages in boreal forest

The relative contributions of habitat structure and composition to biodiversity are often scale-dependent. Although bird communities in boreal forest have been largely altered and threatened by forest harvesting, bird habitat selection in this ecosystem has not been fully understood. Our study aimed to assess the relative contributions of habitat structure and composition on the assemblages of boreal birds at multiple spatial scales characterized by radii ranging from 100 to 1,000?m. We recorded bird species occurrence at 96 stations located in an old-growth forest in the C?te-Nord region of Québec, Canada. We characterized habitat structure using the proportion of dense, open, and sparse stands, and habitat composition using the proportions of coniferous, mixedwood, and deciduous stands. We used partial canonical correspondence analyses and hierarchical variance partitioning to assess the relative contribution of habitat structure and composition on bird assemblage, and logistic regression to model the probability of occurrence for individual species in response to habitat variables. Our results revealed that habitat structure and composition explained similar proportions of the variance in bird assemblage (21.7 vs. 21.6?%), regardless of spatial scale. Whilst logistic regression yielded fair predictions in the occurrence of individual species (i.e., area under the receiver-operating characteristic curve >0.70 for 90?% of the species), it further confirmed our findings in community level analysis. Our study indicates that habitat structure and composition are both important in shaping bird assemblages, but spatial scale draws little influence on their relative contributions.     

Non-native plantation forests as alternative habitat for native forest beetles in a heavily modified landscape

The once extensive native forests of New Zealand’s central North Island are heavily fragmented, and the scattered remnants are now surrounded by a matrix of exotic pastoral grasslands and Pinus radiata plantation forests. The importance of these exotic habitats for native biodiversity is poorly understood. This study examines the utilisation of exotic plantation forests by native beetles in a heavily modified landscape. The diversity of selected beetle taxa was compared at multiple distances across edge gradients between each of the six possible combinations of adjacent pastoral, plantation, clearfell and native forest land-use types. Estimated species richness (Michaelis–Menten) was greater in production habitats than native forest; however this was largely due to the absence of exotic species in native forest. Beetle relative abundance was highest in clearfell-harvested areas, mainly due to colonisation by open-habitat, disturbance-adapted species. More importantly, though, of all the non-native habitats sampled, beetle species composition in mature P. radiata was most similar to native forest. Understanding the influence of key environmental factors and stand level management is important for enhancing biodiversity values within the landscape. Native habitat proximity was the most significant environmental correlate of beetle community composition, highlighting the importance of retaining native remnants within plantation landscapes. The proportion of exotic beetles was consistently low in mature plantation stands, however it increased in pasture sites at increasing distances from native forest. These results suggest that exotic plantation forests may provide important alternative habitat for native forest beetles in landscapes with a low proportion of native forest cover.     

Downscaling indicators of forest habitat structure from national assessments

Downscaling is an important problem because consistent large-area assessments of forest habitat structure, while feasible, are only feasible when using relatively coarse data and indicators. Techniques are needed to enable more detailed and local interpretations of the national statistics. Using the results of national assessments from land-cover maps, this paper demonstrates downscaling in the spatial domain, and in the domain of the habitat model. A moving window device was used to measure structure (habitat amount and connectivity), and those indicators were then analyzed and combined with other information in various ways to illustrate downscaling.     

Effects of landscape structure and habitat type on a plant-herbivore-parasitoid community

The effects of local habitat and large-scale landscape factors on species diversity and species interactions were studied using the insect community in stems of the creeping thistle Cirsium arvense . Thistle abundance was higher in fallows than in crop fields and field margins, with fallows providing 67% of thistle abundance within 15 study areas on a landscape scale. Species richness of the herbivores was positively related with thistle abundance, parasitoid species richness was influenced by habitat type and was positively correlated with herbivore species richness. The abundance of herbivores and parasitoids was affected by local factors such as habitat type and host abundance, but also by landscape factors such as the percentage of non-crop area and the isolation of habitats. The infestation rate caused by the agromyzid Melanagromyza aeneoventris was positively related to percent non-crop area, whereas the parasitism rate of this fly increased with increasing habitat diversity on the landscape scale. For these two interactions and for total herbivore abundance, a scale-dependency of the landscape effects was found. The results emphasize that biological diversity and ecological functions within a plant-insect community are not only affected by local habitat factors but also by large-scale landscape characteristics. Hence, to improve future agri-environmental schemes for biodiversity conservation and biological control large-scale landscape effects and their scale-dependency should be considered.     

Effect of landscape configuration and habitat quality on the community structure of waterbirds using a man-made habitat

Species occurrence and community structure are strongly influenced by multiple factors like habitat selection, species movement capabilities, competition, or conspecific and heterospecific attractions. More specifically, in waterbird communities, previous studies have identified the importance of environmental and structural characteristics of wetlands for their occupation and use. However, the effect of the surrounding landscape configuration remains unknown. In this article, we use a large network of artificial irrigation ponds to evaluate the importance of pond features in comparison to the effect of landscape and spatial configuration on the community at three different spatial scales. Our results show that landscape configuration has relatively little influence on structure of the waterbird community. Pond features were by far the most important variables to describe waterbird abundance and richness. At the species level, we detected differences in habitat preferences relating to species-specific ecological requirements. Our results highlight the importance of using a multiscale approach to understand and predict richness and abundance in waterbird communities. Our findings emphasize the need to maintain high-quality ponds to enhance their suitability for use as breeding and foraging sites.     

Improved photo-CIDNP methods for studying protein structure and folding

Two new techniques offering considerable improvements in the quality of ¹H photo-CIDNP spectra of proteins are demonstrated. Both focus on the problem of progressive photo-degradation of the flavin dye used to generate polarization in exposed tryptophan, tyrosine and histidine side-chains. One approach uses rapid addition and removal of protein/flavin solution between light flashes to mix the NMR sample and introduce fresh dye into the laser-irradiated region. The other involves chemical oxidation of photo-reduced flavin by the addition of hydrogen peroxide. In both cases a larger number of scans can be accumulated before the flavin is exhausted than would otherwise be possible. The techniques are demonstrated by 600 MHz CIDNP-NOESY spectroscopy of bovine holo--lactalbumin, and by real-time CIDNP observation of the refolding of bovine apo--lactalbumin following rapid dilution from a high concentration of chemical denaturant.     

Direct flux and 15N tracer methods for measuring denitrification in forest soils

Estimates of denitrification are one of the key uncertainties in the terrestrial nitrogen (N) cycle, primarily because reliable measurements of this highly variable process—especially the production of its terminal product (N₂)—are difficult to obtain. We evaluated the ability of gas-flow soil core and ¹⁵N tracer methods to provide reliable estimates of denitrification in forest soils. Our objectives were to: (1) describe and present typical results from new gas-flow soil core and in situ ¹⁵N tracer methods for measuring denitrification, (2) discuss factors that affect the relevance of these methods to actual in situ denitrification, and (3) compare denitrification estimates produced by the two methods for a series of sites in a northern hardwood forest ecosystem. Both methods were able to measure accumulations of N₂ over relatively short (2–5 h) incubations of either unamended or tracer-amended intact soils. Denitrification rates measured by the direct flux soil core method were very sensitive to incubation oxygen (O₂) concentration and decreased with increased O₂ levels. Denitrification rates measured by the in situ ¹⁵N tracer method were very sensitive to the ¹⁵N content of the nitrate (NO₃ ^?) pool undergoing denitrification, which limits the applicability of this method for quantifying denitrification in N-poor ecosystems. While its ability to provide accurate estimates of denitrification was limited, the ¹⁵N tracer method provided estimates of the short-term abiotic and biotic transformations of atmospheric N deposition to gas. Furthermore, results suggest that denitrification is higher and that N₂O:N₂ ratios are lower (<0.02) than previously thought in the northern hardwood forest and that short-term abiotic and biotic transformations of atmospheric N deposition to gas are significant in this ecosystem.     

Pine forest structure in a human-dominated landscape system in Korea

To elucidate the characteristics of spatial heterogeneity in a human-dominated landscape, vegetation and community structure of pine (Pinus densiflora andP. rigida) forests were studied at rural Teokseong-ri in Chollanam-do, in the southwestern part of Korea. Daily removal of undergrowth for firewood affects the stratification and species composition in the community. In general, stratification of the pine forest develops in proportion to its distance from the main habitat of farmers, involving the residential and cultivated land. In pine forests near the main habitat of farmers, sun-demanding herbaceous plants grow well, while in remote forests, Fagaceous plants such asQuercus serrata, Q. actissima andCastanea crenata grow well. This zonation results from the fact that removal of undergrowth is greater in the forest near the main habitat of farmers, than in the remote forest. Construction and maintenance of graveyards, however, prevents development of stratification of the forest even in remote stands.     

Local habitat patch pattern of the Siberian flying squirrel in a managed boreal forest landscape

We examined how the structure of a boreal forest landscape is related to the occurrence of the Siberian flying squirrel Pteromys volans in northern Finland. The flying squirrel inhabits mature spruce-dominated ( Picea abies ) mixed forests and is categorised as vulnerable species due to habitat loss and change. We classified a landscape of 374.5 km² into potential habitat patches, potential dispersal areas, and areas incapable of being inhabited using national forest inventory data, and surveyed all 136 potential habitat patches for the presence of the species. Different landscape variables were defined, and also connections by the shortest distances to neighbouring habitat patches along both straight lines and least-cost distances based on specific movement costs were measured. Occupied patches were larger in size, contained more deciduous trees for food and nesting cavities, and were in closer proximity to the nearest occupied patches. Occupied patches were mainly located below 300 m a.s.l. The occurrence of flying squirrels was correctly predicted for 88% of the habitat patches using landscape variables. This modelling result proved to be rather general. In addition, the configuration of occupied patches was mainly clustered across the landscape, and distant occupied patches seemed to be linked to other patches via forested connections. We suggest that maintaining a clustered arrangement of good quality habitat patches and regenerating new potential habitat as well as dispersal areas between the habitat patches seem to be appropriate goals for long-term forest management planning to sustain populations of the flying squirrel in the landscape.     

Scale-dependent habitat selection by wintering geese: implications for landscape management

The management of Arctic migrant geese is complex, because they frequently use landscapes under intensive human use, and are conflict species in multiple respects. Some populations are of high conservation concern, but they also cause agricultural damage, are quarry for hunters, and may be particularly sensitive to infrastructure developments. In Bulgarian Dobrudzha, large wintering populations of greater white-fronted geese Anser albifrons and red-breasted geese Branta ruficollis feed in agricultural land, and cause management dilemmas. We developed linear models to investigate fine- and meso-scale foraging habitat selection of geese foraging on winter wheat in the area, and used these models to make suggestions for zoning landscape use in order to reduce conflict and conserve geese. Habitat selection was scale-dependent. Geese selected fields that were near to major roosts and had low proximity to roads and tree-lines, which may be a proxy for hunting disturbance. We found some evidence for selection of wheat fields with high nutritional quality. Within fields, geese strongly avoided features which cause landscape ‘clutter’: power-lines, tree-lines and wind-turbines, but primarily over distances of less than a few hundred metres. Optimal management might involve encouraging goose populations to feed in areas close to roosts, by means of agri-environmental measures and creation of hunting-free refuges. This would allow efficient use of agri-environment funds, might reduce conflict with farmers, and would mean that infrastructure development—notably wind farms—could be sited at greater distance from roosts with relatively minor impact on foraging habitat availability.     

Liana habitat associations and community structure in a Borneanlowland tropical forest

Lianas (woody vines) contribute substantially to the diversity and structure of most tropical forests, yet little is known about the importance of habitat specialization in maintaining tropical liana diversity and the causes of variation among forests in liana abundance and species composition. We examined habitat associations, species diversity, species composition, and community structure of lianas at Sepilok Forest Reserve, Sabah, Malaysia in northeastern Borneo among three soil types that give rise to three distinct forest types of lowland tropical rain forest: alluvial, sandstone hill, and kerangas (heath) forest. Alluvial soils are more nutrient rich and have higher soil moisture than sandstone soils, whereas kerangas soils are the most nutrient poor and drought prone. Lianas ≥0.5-cm in diameter were measured, tagged, and identified to species in three square 0.25-ha plots in each forest type. The number of lianas ≥0.5 cm did not differ significantly among forest types and averaged 1348 lianas ha⁻¹, but mean liana stem diameter, basal area, estimated biomass, species richness, and Fisher’s diversity index were all greater for plots in alluvial than sandstone or kerangas forests. Liana species composition also differed greatly among the three habitats, with 71% of species showing significant positive or negative habitat associations. Sandstone forests were intermediate to alluvial and kerangas forests in most aspects of liana community structure and composition, and fewer species showed significant habitat associations with this forest type. Ranking of forest types with respect to liana density, biomass, and diversity matches the ranking in soil fertility and water availability (alluvial > sandstone hill > kerangas). These results suggest that edaphic factors play an important role in maintaining liana species diversity and structuring liana communities.     

A universal airborne LiDAR approach for tropical forest carbon mapping

Airborne light detection and ranging (LiDAR) is fast turning the corner from demonstration technology to a key tool for assessing carbon stocks in tropical forests. With its ability to penetrate tropical forest canopies and detect three-dimensional forest structure, LiDAR may prove to be a major component of international strategies to measure and account for carbon emissions from and uptake by tropical forests. To date, however, basic ecological information such as height–diameter allometry and stand-level wood density have not been mechanistically incorporated into methods for mapping forest carbon at regional and global scales. A better incorporation of these structural patterns in forests may reduce the considerable time needed to calibrate airborne data with ground-based forest inventory plots, which presently necessitate exhaustive measurements of tree diameters and heights, as well as tree identifications for wood density estimation. Here, we develop a new approach that can facilitate rapid LiDAR calibration with minimal field data. Throughout four tropical regions (Panama, Peru, Madagascar, and Hawaii), we were able to predict aboveground carbon density estimated in field inventory plots using a single universal LiDAR model (r ²  = 0.80, RMSE = 27.6 Mg C ha⁻¹). This model is comparable in predictive power to locally calibrated models, but relies on limited inputs of basal area and wood density information for a given region, rather than on traditional plot inventories. With this approach, we propose to radically decrease the time required to calibrate airborne LiDAR data and thus increase the output of high-resolution carbon maps, supporting tropical forest conservation and climate mitigation policy.     

Species’ thermal preferences affect forest bird communities along landscape and local scale habitat gradients

The spatial distributions of species, and the resulting composition of local communities, are shaped by a complex interplay between species’ climatic and habitat preferences. We investigated this interaction by analyzing how the climatic niches of bird species within given communities (measured as a community thermal index, CTI) are related to vegetation structure. Using 3129 bird communities from the French Breeding Bird Survey and an information theoretic multimodel inference framework, we assessed patterns of CTI variation along landscape scale gradients of forest cover and configuration. We then tested whether the CTI varies along local scale gradients of forest structure and composition using a detailed data set of 659 communities from six forests located in northwestern France. At landscape scale, CTI values decreased with increasing forest cover, indicating that bird communities were increasingly dominated by cold‐dwelling species. This tendency was strongest at low latitudes and in landscapes dominated by unfragmented forest. At local scale, CTI values were higher in mature deciduous stands than in conifer or early stage deciduous stands, and they decreased consistently with distance from the edge of forest. These trends underpin the assertion that species’ habitat use along forest gradients is linked with their climatic niche, although it remains unclear to what extent it is a direct consequence of microclimatic variation among habitats, or a reflection of macroscale correlations between species’ thermal preferences and their habitat choice. Moreover, our results highlight the need to address issues of scale in determining how habitat and climate interact to drive the spatial distribution of species. This will be a crucial step towards accurate predictions of changes in the composition and dynamics of bird communities under global warming.     

Farmland as stopover habitat for migrating birds – effects of organic farming and landscape structure

Agricultural intensification in Europe has affected farmland bird populations negatively, both during summer and winter. Although the migratory period poses separate challenges on birds than breeding and wintering, the consequences of farming practices for birds during migration remain poorly investigated. We monitored abundance and species richness of migratory birds in autumn at matched pairs of organic and conventional farms situated either in intensively farmed open plains (homogeneous landscapes) or in small‐scale farming landscapes (heterogeneous landscapes) in southern Sweden. Total bird density did not differ between landscape types but was marginally higher on organic compared to conventional farms. When including taxonomic status in the model (passerines vs non‐passerines), we found significantly more birds on organic farms, and more non‐passerines in the homogeneous landscapes. The effect of farming practice and landscape type on density differed between functional groups. Omnivore density was higher in the homogeneous landscapes, and invertebrate feeders were marginally more abundant on organic farms. The effects of farming practice on the overall species richness and on the density of granivorous birds were landscape dependent. In the homogeneous landscapes, organic farms held a higher number of species and density of granivorous birds than conventional farms, but there was no such difference in the heterogeneous landscapes. Thus, organic farming can enhance abundance and species richness of farmland birds during migration, but the effect differs between landscape types and species. The effectiveness of organic farming was highest in the homogeneous landscape making it important to promote organic farming there. However, for some species during migration, increased heterogeneity in homogeneous landscapes may have negative effects. We propose that migratory bird diversity in homogeneous landscapes may be best preserved by keeping the landscape open, but that a reduced agricultural intensity, such as organic farming, should be encouraged.     

Monitoring arthropods in a tropical landscape: relative effects of sampling methods and habitat types on trap catches

To discuss the challenge of monitoring multi-species responses of tropical arthropods to disturbance, we considered a large dataset (4 × 10⁵ individuals; 1,682 morphospecies representing 22 focal taxa) based on the work of parataxonomists to examine the effects of anthropogenic disturbance on arthropods at Gamba, Gabon. Replication included three sites in each of four different stages of forest succession and land use after logging, surveyed during a whole year with four sampling methods: pitfall, Malaise, flight-interception and yellow pan traps. We compared the suitability of each sampling method for biological monitoring and evaluated statistically their reliability for 118 arthropod families. Our results suggest that a range of sampling methods yields more diverse material than any single method operated with high replication. Multivariate analyses indicated that morphospecies composition in trap catches was more strongly influenced by habitat type than by sampling methods. This implies that for multi-species monitoring, differences in trap efficiency between habitats may be neglected, as far as habitat types remain well contrasted. We conclude that for the purpose of monitoring large arthropod assemblages in the long-term, a protocol based on operating a set of different and non-disruptive traps appears superior in design than summing a series of taxa-specific protocols.     

Species traits and the response of open‐habitat species to forest edge in landscape mosaics

Human driven changes in land‐use have increased the need to understand how landscape structure affects species distribution. We studied how forest edges affected the distribution of birds in grasslands recently encroached by forest patches. We investigated how species’ biological traits influenced their response to vegetation change near forest edges. We censured birds along 300‐m line transects run into the open habitat perpendicularly to forest edges. We recorded habitat variables and landscape context along each transect and characterized edges and forest patches. We recorded 33 bird species in 153 transects for a total of 654 individuals. We analyzed species response to edges with generalized linear mixed models. Habitat preference was prevalent to explain species response to forest edges. The abundance of open‐habitat birds such as skylark Alauda arvensis decreased significantly in the vicinity of edges. This negative response extended within 150 m from the edge. The effect was disproportionately higher in open‐habitat species with high conservation concern. The abundance of species feeding or/and breeding in both forest and open habitat, such as woodlarks Lullula arborea, sharply increased near edges (positive edge response). Abundance of shrub and non‐shrub dependent species increased with distance to edge. The two species groups did no differ in abundance/distance to edge relationship. Intensity of species response to forest edges varied among transects in relation to transect vegetation characteristics. Edge length or aspect, diet and nest height had no direct effect. We discuss the possible role of variation in resources and nest predation risk to explain observed patterns.