基于葡萄EST数据库糖代谢途径有关基因的分析

以拟南芥糖代谢相关酶基因序列作为探针,对葡萄EST数据库进行同源检索筛选,获得相应的同源EST序列,并以葡萄果实cDNA为模板,通过PCR反应,对葡萄糖代谢途径相关基因进行了分析。进一步预测了葡萄糖代谢途径相关酶编码基因个数,分别位于1、4、5、6、7、8、11、12、13、16、17、18、19号染色体,另有3条序列未能定位到染色体,并对编码基因表达强弱进行了分析,为深入了解葡萄果实内糖代谢的机理提供一定的工作基础,也可以为如何调控果实糖代谢以及提高葡萄果实品质提供理论依据。     

Co-mapping studies of QTLs for fruit acidity and candidate genes of organic acid metabolism and proton transport in sweet melon (Cucumis melo L.)

Sweet melon cultivars contain a low level of organic acids and, therefore, the quality and flavor of sweet melon fruit is determined almost exclusively by fruit sugar content. However, genetic variability for fruit acid levels in the Cucumis melo species exists and sour fruit accessions are characterized by acidic fruit pH of <5, compared to the sweet cultivars that are generally characterized by mature fruit pH values of >6. In this paper, we report results from a mapping population based on recombinant inbred lines (RILs) derived from the cross between the non-sour 'Dulce' variety and the sour PI 414323 accession. Results show that a single major QTL for pH co-localizes with major QTLs for the two predominant organic acids in melon fruit, citric and malic, together with an additional metabolite which we identified as uridine. While the acidic recombinants were characterized by higher citric and malic acid levels, the non-acidic recombinants had a higher uridine content than did the acidic recombinants. Additional minor QTLs for pH, citric acid and malic acid were also identified and for these the increased acidity was unexpectedly contributed by the non-sour parent. To test for co-localization of these QTLs with genes encoding organic acid metabolism and transport, we mapped the genes encoding structural enzymes and proteins involved in organic acid metabolism, transport and vacuolar H+ pumps. None of these genes co-localized with the major pH QTL, indicating that the gene determining melon fruit pH is not one of the candidate genes encoding this primary metabolic pathway. Linked markers were tested in two additional inter-varietal populations and shown to be linked to the pH trait. The presence of the same QTL in such diverse segregating populations suggests that the trait is determined throughout the species by variability in the same gene and is indicative of a major role of the evolution of this gene in determining the important domestication trait of fruit acidity within the species.     

A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes

A genetic map of melon enriched for fruit traits was constructed, using a recombinant inbred (RI) population developed from a cross between representatives of the two subspecies of Cucumis melo L.: PI 414723 (subspecies agrestis) and ‘Dulce’ (subspecies melo). Phenotyping of 99 RI lines was conducted over three seasons in two locations in Israel and the US. The map includes 668 DNA markers (386 SSRs, 76 SNPs, six INDELs and 200 AFLPs), of which 160 were newly developed from fruit ESTs. These ESTs include candidate genes encoding for enzymes of sugar and carotenoid metabolic pathways that were cloned from melon cDNA or identified through mining of the International Cucurbit Genomics Initiative database (http://www.icugi.org/). The map covers 1,222 cM with an average of 2.672 cM between markers. In addition, a skeleton physical map was initiated and 29 melon BACs harboring fruit ESTs were localized to the 12 linkage groups of the map. Altogether, 44 fruit QTLs were identified: 25 confirming QTLs described using other populations and 19 newly described QTLs. The map includes QTLs for fruit sugar content, particularly sucrose, the major sugar affecting sweetness in melon fruit. Six QTLs interacting in an additive manner account for nearly all the difference in sugar content between the two genotypes. Three QTLs for fruit flesh color and carotenoid content were identified. Interestingly, no clear colocalization of QTLs for either sugar or carotenoid content was observed with over 40 genes encoding for enzymes involved in their metabolism. The RI population described here provides a useful resource for further genomics and metabolomics studies in melon, as well as useful markers for breeding for fruit quality.     

Conversions of Imported 14C-Glucose and Sucrose Synthesis in Bai-lan Melon Fruits

The conversions of incorporated 14C-glucose in fruit flesh and in seeds were investigated at different stages of fruit development. In addition, the biochemical mechanism of sucrose synthesis in fruits of Bai-Lan melon were also studied. The results were summarized as follows: In fruit flesh and in seeds at young fruit stage, more than half of the incorporated 14C was found in the dilute acid hydrolyzable and non-hydrolyzable fractions, both of which represent the structural elements. While in the fruits approaching maturity (42 days old), a relatively small amount of 14C associated with the structural elements was found. The contributions of 14C of fractions hydrolyzed and non-hydrolyzed by dilute acid to the total radioactivity were reduced to 18% and 32%, respectively, in fruit flesh and in seeds. The results of identification of soluable sugar by using paper chromatography indicated that, the 14C was only associated with fructose after infiltrating the young fruit slices with 14C-glucose, but the 14C was predominately incorporated into sucrose at later stage of fruit development. The above results of 14C labeling experiments suggest that the pattern of metabolism is changed with fruit development. The greater part of metabolites is used in synthesis of structural elements which is necessary for growth and related processes at early stage of fruit developrnent. However, as the fruit reaches full size. the demand for carbon used in structural tissue is reduced. At this time, the direction of the enzymatic reactions changed in favor of sucrose synthesis. The activity of sucrose synthesis in young fruits was rather low when various substrates were supplied. It was possible that the enzymes related to sucrose synthesis were absent in young fruits of Bai-Lan melon. The activity of sucrose synthesis in fruits at later stage of development increased by about 5-fold of that at early stage. The higher activity of sucrose synthesis was observed when UDPG+F-6-P were supplied as substrates. It is shown that the sucrose in Bai- Lan melon fruits may be mainly synthesized by sucrose phosphate synthetase catalyzing the reaction between UDPG and F-6-P to yield sucrose-P. The biochemical mechanism of sucrose synthesis in Bai-Lan melon fruits is briefly discussed.     

Carbohydrate metabolism during early fruit development of sweet melon (Cucumis melo)

In sink tissues of cucurbits, including sweet melon fruits, the galactosyl-sucrose oligosaccharides, stachyose and raffinose, together with sucrose, are the major translocated carbohydrates. In the present study we investigated the carbohydrate metabolism of young melon ( Cucumis melo L. cv. C-8) fruit during the period of initial fruit set and development, from 3 days prior to anthesis until 20 days after anthesis (DAA), prior to the onset of sucrose accumulation. The enzymes assayed could be classified into two categories according to developmental patterns. Two of the enzymes, alkaline α -galactosidase I [EC 3.2.1.22], which hydrolyzes both raffinose and stachyose, and acid invertase [EC 3.2.1.26] either increased or remained stable during the first 10 DAA. The remaining measured enzymes (the stachyose-specific alkaline α -galactosidase form II, acid α -galactosidase, alkaline invertase, sucrose synthase [EC 2.4.1.13], galactokinase [EC 2.7.1.6], UDP-Gal PPase [EC 2.7.7.10], UDP-Glc-4 epimerase [EC 5.1.3.2], UDP-Glc PPase [EC 2.7.7.9], phosphoglucomutase [EC 5.4.2.2] and phosphoglucoisomerase [EC 5.3.1.9]) all showed a similar developmental pattern of steady decrease in activity following anthesis. We also compared the saccharide metabolism of pollinated and non-pollinated ovaries during the initial days following anthesis. In the absence of pollination, ovary growth dramatically decreased by the first DAA and was accompanied by a sharp decrease in the activity of UDP-Glc PPase. Other enzymes in the pathway, including the enzymes of stachyose and raffinose hydrolysis, did not decrease in activity until 2 or 4 DAA, after ovary growth was affected. These results provide information to assess the possible regulating enzymes in cucurbit ovary development and fruit set.     

果实中糖的运输、代谢与积累及其调控

叶片光合产物向果实运输的主要形态是蔗糖,但在木本蔷薇科果树中,光合产物的主要运输形态为山梨醇.糖从质外体空间跨膜运入共质体的过程由糖运输蛋白介导,而糖运输蛋白的基因表达伴随着果实糖的积累而增强.蔗糖代谢酶参与了细胞内外4个与糖运输有关的无效循环.己糖代谢抑制是果实糖快速积累的前提.在木本蔷薇科果实中,蔗糖代谢酶活力仍非常活跃,表明蔗糖可能与山梨醇在果实生长发育中都起重要的作用.糖作为信号分子,调节了承担糖运输与代谢的基因的表达.自然环境因子和栽培措施能有效调控糖运输、代谢与积累.反义抑制Ivr基因表达能提高番茄果实含糖量的实验结果表明遗传工程调控糖积累的潜力.阐明糖信号与其它信号互作对糖运输与代谢的调控机制是今后研究的重点.     

Label-free shotgun proteomics and metabolite analysis reveal a significant metabolic shift during citrus fruit development

Label-free LC-MS/MS-based shot-gun proteomics was used to quantify the differential protein synthesis and metabolite profiling in order to assess metabolic changes during the development of citrus fruits. Our results suggested the occurrence of a metabolic change during citrus fruit maturation, where the organic acid and amino acid accumulation seen during the early stages of development shifted into sugar synthesis during the later stage of citrus fruit development. The expression of invertases remained unchanged, while an invertase inhibitor was up-regulated towards maturation. The increased expression of sucrose-phosphate synthase and sucrose-6-phosphate phosphatase and the rapid sugar accumulation suggest that sucrose is also being synthesized in citrus juice sac cells during the later stage of fruit development.