A new gonad-infecting species of <Emphasis Type="Italic">Philometra</Emphasis> Costa, 1845 (Nematoda: Philometridae) from the marine fish <Emphasis Type="Italic">Terapon jarbua</Emphasis> (Forsskål) (Terapontidae) off the eastern coast of India

A new nematode species, Philometra terapontis n. sp. (Philometridae), is described from male and female specimens found in the ovary of the jarbua terapon Terapon jarbua (Forsskål) (Terapontidae, Perciformes) from the Bay of Bengal off the eastern coast of India. Based on light and scanning electron microscopical examination, the new species differs from most other gonad-infecting Philometra spp. in the length of the spicules (105–114 μm), a gubernaculum with dorsal, lamella-like structures and a distinct protuberance on its distal end, and a U-shaped, dorsally uninterrupted caudal mound in the male. From a few congeneric, gonad-infecting species with unknown males, it can be distinguished by morphological and biometrical features found in gravid females (i.e. length of body, length of first-stage larvae or oesophagus, and caudal structure), by the host type (fish family) and by the geographical distribution. Philometra terapontis is the first philometrid species reported from a fish belonging to the family Terapontidae. Philometra sawara Quiazon, Yoshinaga &; Ogawa, 2008 is considered a junior synonym of P. scomberomori (Yamaguti, 1935). A key to gonad-infecting species of Philometra parasitising marine and brackish-water fishes is provided.     

Two new gonad-infecting species of <Emphasis Type="Italic">Philometra</Emphasis> Costa, 1845 (Nematoda: Philometridae) from <Emphasis Type="Italic">Trachinus</Emphasis> spp. (Osteichthyes: Trachinidae) in the Gulf of Hammamet,Tunisia

Based on light and scanning electron microscopical studies, two new gonad-infecting species of Philometra Costa, 1845, P. draco n. sp. and P. radiata n. sp. (Nematoda: Philometridae), are described from the marine perciform fishes Trachinus draco (Linnaeus) and T. radiatus (Linnaeus) (both Trachinidae), respectively, in the Gulf of Hammamet, off the northeastern coast of Tunisia. Philometra draco n. sp. and P. radiata n. sp. can be separated from other gonad-infecting species of this genus by the structures associated to the gubernaculum (e.g. dorsal protuberance, smooth field separating the dorsolateral longitudinal parts), as well as by the length of the body, spicules and gubernaculum. Philometra radiata n. sp. can be distinguished from P. draco n. sp. in having the dorsal side of the gubernaculum distal end provided with a median longitudinal smooth field demarcated by two dorsolateral lamellate parts. These two new species are the first philometrid species described from fishes of the family Trachinidae.     

Deep sequencing analysis of bacterial community structure of Soldhar hot spring,India

We investigated the bacterial community structure of Soldhar hot spring with extreme high temperature 95°C located in Uttarakhand, India using high throughput sequencing. Bacterial phyla Proteobacteria (88.8%), Deinococcus-Thermus (7.5%), Actinobacteria (2.3%), and Firmicutes (1.07%) were predominated in the sequencing survey, whereas Bacteroidetes, Verrucomicrobia, Aquificae and Acidobacteria were detected in relatively lower abundance in Soldhar hot spring. At the family level, Comamonadaceae (52.5%), Alteromonadaceae (15.9%), and Thermaceae (7.5%) were mostly dominated in the ecosystem followed by Chromatiaceae, Microbacteriaceae, and Cyclobacteriaceae. Besides, members of Rhodobacteraceae, Moraxellaceae, Xanthomonadaceae, Aquificaceae, Enterobacteriaceae, Bacillaceae, Methylophilaceae, etc. were detected as a relatively lower abundance. In the present study we discuss the overall microbial community structure and their relevance to the ecology of the Soldhar hot spring environment.     

Comparative Analysis of Spermatozoa Morphology in Three Fish Species from the Suborder Scorpaenoidei

The methods of scanning and transmission electron microscopy are used for the investigation of external morphology and ultrastructure of spermatozoa in scorpaenoid fishes Parascorpaena picta, Dendrochirus zebra (Scorpaenidae), and Synanceia horrida (Synanceiidae). Based on the literature data, a comparison with other species of the genera Scorpaena, Sebastapistes, and Scorpaenopsis (Scorpaenidae) is conducted. In the studied species, the spermatozoon consists of the rounded head (its length is slightly smaller than its width), moderately developed midpiece, and flagellum. P. picta differs from the other species in the presence of the widening of the cytoplasmic channel surrounding the initial part of the flagellum, the largest numbers of mitochondrial sections, and the longest flagellum. S. horrida does not differ significantly from the representatives of the family Scorpaenidae. However, based on the contour of the head and midpiece (elliptic Fourier analysis), there is a trend to the separation of S. horrida from P. picta and D. zebra. The data on comparative spermatozoa morphology are discussed in relation to current phylogenetic schemes.     

Free-living nematodes of the genus <Emphasis Type="Italic">Alaimella</Emphasis> Cobb 1920 (Nematoda: Leptolaimidae): A description of <Emphasis Type="Italic">A. macramphis</Emphasis> sp. n. from the White Sea and a revision of the genus

Alaimella cincta Cobb 1920 and Alaimella macramphis sp. n. are described and illustrated. Both the species were first recorded for the White Sea in northern Russia. A. cincta occurs in the shells of the agglutinated foraminiferan Reophax curtus, as well as freely in bottom sediments. A. macramphis sp. n. is described from a single male sampled from bottom sediments. A. macramphis sp. n. is distinguished from two previously known species of Alaimella (A. cincta Cobb 1920 and A. truncate Cobb 1920) by having a longer body, longer cephalic setae, and a wide amphid equal to the respective body diameter. The new species also differs from A. truncate by the distinct striation of the cuticular annulations. The Alaimella species are additionally characterized by having a posterior glandular widening of the esophagus. An emended diagnosis of the genus Alaimella Cobb 1920 and a key for species identification are provided.     

New species of scelionids (Hymenoptera,Scelionidae) of the Israel fauna

Four new species of Scelionidae of the genera Telenomus (subgenus Telenomus) and Macroteleia (Telenomus (T.) ordanus Kononova, T. (T.) lunatus Kononova, Macroteleia israiliensis Kononova, and M. simutniki Kononova) from Israel are described. T. (T.) ordanus differs from the species of the subgenus Telenomus in the presence of short rugae on abdominal tergite II, smooth and shiny abdominal stem, and yellow legs. T. (T.) lunatus, similar to T. (T.) clavatus Kozlov et Kononova, can be distinguished by the smaller size, finer body sculpture, and sculpture of abdominal tergite II. Macroteleia israiliensis differs from M. rufa Szelényi in the more slender body and its coloration, as well as in the structure of the propodeum. M. simutniki differs from M. aurea Kozlov et Kononova in the wider abdomen and in the antennal structure (the 2nd antennal segment is wider, segments of the antennal club are as long as wide).     

To the knowledge of the herbivorous scolytid genus <Emphasis Type="Italic">Thamnurgus</Emphasis> Eichhoff (Coleoptera,Scolytidae)

Based on the male genitalia structure, 3 subgenera are distinguished in the genus Thamnurgus: Thamnurgus s. str. (type species Thamnurgus euphorbiae Küster; the subgenus includes also Th. characiae and Th. varipes), Parathamnurgus subgen. n. (type species Thamnurgus caucasicus Reitter; includes also Th. armeniacus, Th. kaltenbachii, Th. brylinskyi, and Th. pegani) and Macrothamnurgus subgen. n. (type species Thamnurgus delphinii Rosenhauer; includes also Th. petzi and Th. rossicus). Thamnurgus s. str. comprises species with the aedeagus lacking supporting apical structures and with unbranched apophyses. In the two other subgenera the aedeagal apophyses are branched and the apical supporting structures are differently arranged. Species of Thamnurgus s. str. are associated exclusively with Euphorbiaceae, species of Macrothamnurgus, with Ranunculaceae, and those of Parathamnurgus, with plants of several families. A key to Palaearctic Thamnurgus species based on the external and genital characters is proposed. The host plants and distribution of some species are clarified. In the aedeagus structure, the Palaearctic Thamnurgus species clearly differ from the African Thamnurgus and also from the members of Taphronurgus, Cynanchophagus, Triotemnus, and Xylocleptes. Data on the male genital structure support generic distinctness of Thamnurgus, Taphronurgus and Xylocleptes. Lectotypes of Th. armeniacus Reitter, 1897, Th. brylinskyi Reitter, 1889, Th. characiae Rosenhauer, 1878, Th. declivis Reitter, 1897, Th. delphinii (Rosenhauer, 1856), Th. pegani Eggers, 1933, and Th. petzi Reitter, 1901 are designated. Thamnurgus jemeniae Schedl, 1975 is transferred to Xylocleptes, and Th. orientalis Schedl, 1978, to Pseudothamnurgus. Based on the endophallus characters, Thamnurgus ugandensis Nunberg, 1961 and Th. lobeliae Eggers, 1939 are considered to belong to a genus distinct from the Palaearctic Thamnurgus.     

Genome-Wide Analysis of the ZRT,IRT-Like Protein (ZIP) Family and Their Responses to Metal Stress in <Emphasis Type="Italic">Populus trichocarpa</Emphasis>

The ZRT, IRT-like protein (ZIP) family plays an important role in the transport of zinc (Zn) and iron (Fe) across the cell membrane in many different species. However, studies on ZIP family are mainly limited in herbaceous species; hence, we investigated functional divergence of ZIP family in Populus trichocarpa. We identified 21 ZIP genes in P. trichocarpa and classified them into four groups based on phylogenetic analysis. Structural analyses revealed that most of the PtrZIP transporters have eight transmembrane domains (TMDs). PtrZIP members were unequally positioned in 19 P. trichocarpa linkage groups (LGs), with six tandem duplications and four segmental duplications. The promoter regions of PtrZIP genes contain Zn, Fe, copper (Cu), and other metal stress-related cis-elements. Additionally, tissue-specific expression of PtrZIP genes showed that most of them had relatively high expression levels in the root. Quantitative real-time RT-PCR (qRT-PCR) analysis revealed that the expression of PtrZIP genes were induced not only under deficiency or excess condition of Zn, Fe, Cu and manganese (Mn) but also under excess condition of cadmium (Cd) and lead (Pb) stress. These findings indicated that PtrZIP genes may have played potential roles in metal transporters. Genome-wide analysis of PtrZIP genes in P. trichocarpa provided more comprehensive insights on the structure and function of this gene family.     

Phylogenetic Diversity of the Sulfur Cycle Bacteria in the Bottom Sediments of the Chersonesus Bay

The Black Sea is the largest meromictic basin, in the bottom sediments of which a powerful biogenic process of sulfide production occurs. The goal of the present work was to obtain data on phylogenetic diversity of the sulfur cycle microorganisms (sulfate-reducing and sulfur-oxidizing bacteria) in the Black Sea coastal gas-saturated bottom sediments. The samples were collected in the Chersonesus (Blue) Bay near Sevastopol from whitish bacterial mats of sulfurettes, and from the upper layer of the nearby seabed. Using DNA isolated from the native samples and obtained enrichment cultures, PCR analysis was performed with oligonucleotide primers specific to the fragments of the 16S rRNA genes of the main subgroups of sulfatereducing bacteria (SRB) and to the fragments of the dsrB gene (both reductive and oxidative types), encoding the β-subunit of dissimilatory (bi)sulfite reductase, the key enzyme in the sulfur cycle, inherent in both sulfate- reducing and sulfur-oxidizing microorganisms. The presence of 16S rRNA gene fragments specific to the genera Desulfobacterium, Desulfobacter, Desulfococcus–Desulfonema–Desulfosarcina, and Desulfovibrio–Desulfomicrobium was detected in the DNA samples isolated from coastal bottom bacterial mats. Usage of denaturing gradient gel electrophoresis (DGGE) with subsequent sequencing of reamplified dsrB gene fragments revealed that according to deduced amino acid sequences encoded by the dsrB gene (reductive type), SRB from the coastal gas-saturated bottom sediments of the Black Sea had the highest homology (92?99%) with the dsrB gene of cultured SRB belonging to the genera Desulfovibrio, Desulfatitalea, Desulfobacter, and Desulfobacterium, as well as with uncultured SRB strains from various marine habitats, such as bottom sediments of the Northern and Japanese seas. Deduced amino acid sequences encoded by the oxidative dsrB gene had the highest homology (90?99%) with the relevant sequences of the genera Thiocapsa, Thiobaca, Thioflavicoccus, and Thiorhodococcus.     

Genome-Wide Identification of the Dicer-Like,Argonaute, and RNA-Dependent RNA Polymerase Gene Families in Cucumber (<Emphasis Type="Italic">Cucumis sativus</Emphasis> L.)

Dicer, Argonaute (AGO), and RNA-dependent RNA polymerase (RDR) comprise the core components of RNA-induced silencing complexes, which trigger RNA silencing. Here, we performed a complete analysis of the cucumber Dicer-like, AGO, and RDR gene families including the gene structure, genomic localization, and phylogenetic relationships among family members. We identified seven CsAGO genes, five CsDCL genes, and eight CsRDR genes in cucumber. Based on phylogenetic analysis, each of these genes families was categorized into three or four clades. The orthologs of CsAGOs, CsDCLs, and CsRDRs were identified in apple, peach, wild strawberry, foxtail millet, and maize, and the evolutionary relationships among the orthologous gene pairs were investigated. We also investigated the expression levels of CsAGOs, CsDCLs, and CsRDRs in various cucumber tissues. All CsAGOs were relatively higher upregulated in leaves and tendrils than in other organs, especially CsAGO1c, CsAGO1d, and CsAGO7. All CsDCL genes were relatively higher upregulated in tendrils, with almost no expression detected for CsDCL1, CsDCL4a, or CsDCL4b in other organs. In addition, CsRDR1a, CsRDR2, CsRDR3, and CsRDR6 had relatively higher upregulation in tendrils, whereas almost all CsRDRs were downregulation in other organs. The results of this study will facilitate further studies of gene silencing pathways in cucumber.     

A study of the intestinal microbiomes of the Lake Baikal oilfishes (Cottoidei,Comephoridae)

A comparative analysis of the intestinal microbiomes of some representatives of the Lake Baikal endemic family Comephoridae—the big oilfish Comephorus baicalensis (Pallas, 1776) and the little oilfish C. dybowski (Korotneff, 1904)—has been performed for the first time. The phylotype Akkermansia (phylum Verrucomicrobia) was detected in the C. dybowski microbiome, while Alistipes, Bacteroides, Chryseobacterium, Prevotella (Bacteroidetes), and Peptoniphilus (Firmicutes), were found in the C. baicalensis microbiome. Their presence in the intestine is associated with an elevated lipid uptake or an increase in the human and animal body weight. It is hypothesized that these microorganisms are involved in the lipid metabolism of the oilfish and determine their morphophysiological adaptations to pelagic life.     

Contribution to the phylogeny and a new species of <Emphasis Type="Italic">Coccodiella</Emphasis> (Phyllachorales)

Coccodiella is a genus of plant-parasitic species in the family Phyllachoraceae (Phyllachorales, Ascomycota), i.e., tropical tar spot fungi. Members of the genus Coccodiella are tropical in distribution and are host-specific, growing on plant species belonging to nine host plant families. Most of the known species occur on various genera and species of the Melastomataceae in tropical America. In this study, we describe the new species C. calatheae from Panama, growing on Calathea crotalifera (Marantaceae). We obtained ITS, nrLSU, and nrSSU sequence data from this new species and from other freshly collected specimens of five species of Coccodiella on members of Melastomataceae from Ecuador and Panama. Phylogenetic analyses allowed us to confirm the placement of Coccodiella within Phyllachoraceae, as well as the monophyly of the genus. The phylogeny of representative species within the family Phyllachoraceae, including Coccodiella spp., graminicolous species of Phyllachora and taxa with erumpent to superficial stroma from several host families, suggests that the genus Phyllachora might be polyphyletic. Furthermore, tar spot fungi with superficial or erumpent perithecia seem to be restricted to the family Phyllachoraceae, independently of the host plant. We also discuss the biodiversity and host-plant patterns of species of Coccodiella worldwide.     

Informative Value of Temperatures in Different Areas of the Human Body for Correcting Body Thermal Imbalance during Extravehicular Activities

Identification of noninvasive and informative sites on the body reflecting the development of body thermal imbalance during extravehicular activities (EVAs) is highly important for enhancing astronaut safety. Temperature changes were evaluated on several areas of the head (the mastoid fossa (T _mf ), the forehead (T _fo ), and the cheek (T _ch )) and on the fingers (T _fing ). Subjects were dressed in a multicompartment liquid cooling/warming garment. Studies I and II consisted of different combinations of hood versus garment cooling or warming imposed across stages; studies III and IV involved sagittally divided cooling or warming regimes with the hood worn (study III) or with the head uncovered (study IV). In studies I and II, T _mf significantly (P < 0.05) differed between stages 2, when the head was cooled and the rest of the body heated, and 3, when the head was heated and the rest of the body cooled. The T _mf changes were consistent with the thermal conditions imposed on the head but not reflective of the developing body heat deficit. In study III, the T _mf at stages 2 and 3 on the right or the left followed the thermal conditions on the ipsilateral side of the body (P < 0.01). In study IV, T _fing showed no significant differences across stages. In studies I–IV, T _fing showed consistent changes across stages (P < 0.05), reflecting the developing body heat deficit. In all studies, there were no significant differences in rectal temperature (T _re ) across stages. T _mf and temperatures at other head skin sites did not respond in accordance with the actual intensity of a heat or cold flux from the garment and were not reflective of the overall development of body thermal imbalance. T _fing was a more adequate indicator of initial thermal destabilization and provided information that would be useful for monitoring the thermal balance and comfort during EVAs.     

On the First Finds of the Genus <Emphasis Type="Italic">Djanaliparkinsonia</Emphasis> (Stephanoceratidae,Ammonoidea) in the Upper Bajocian of the Northern Caucasus

The genus Djanaliparkinsonia Kutuzova, 1975 was originally described as an endemic subgenus of the genus Parkinsonia (family Parkinsoniidae of the superfamily Perisphinctoidea) from the Upper Bajocian (middle member of the Degibadam Formation) of the Gissar Range (Uzbekistan). A new species D. alanica sp. nov. is established from the Upper Bajocian Garantiana garantiana Zone (upper member of the Djangura Formation) based on occurrences in the Northern Caucasus (Karachay-Cherkessia). Macroconchs and microconchs of the new species are described from the two localities on the Kuban and Kyafar rivers. Djanaliparkinsonia sp. is identified from the lower subzone of the Parkinsonia parkinsoni Zone of the Kyafar River. The species composition and geographic range of Djanaliparkinsonia are expanded: a species previously described from Germany as Garantiana bentzi Wetzel, 1954 also assigned to the genus. The genus Djanaliparkinsonia is assigned to the subfamily Garantianinae of the family Stephanoceratidae (superfamily Stephanoceratoidea).     

Lepocreadiidae Odhner, 1905 and Aephnidiogenidae Yamaguti, 1934 (Digenea: Lepocreadioidea) of fishes from Moreton Bay,Queensland, Australia,with the erection of a new family and genus

Digeneans of the lepocreadioid families Lepocreadiidae Odhner, 1905 and Aephnidiogenidae Yamaguti, 1934 from Moreton Bay, off southern Queensland, Australia, are recorded, along with the erection of a new family, Gibsonivermidae. Molecular data were generated for all representatives of these families collected during this study and a phylogram for members of the superfamily was generated based on the partial 28S rDNA dataset, placing these species in context with those previously sequenced. This phylogenetic analysis demonstrates that the monotypic Gibsonivermis Bray, Cribb & Barker, 1997 is isolated from all other lepocreadioids and supports the erection of Gibsonivermidae n. fam., which is defined morphologically, based particularly on the uniquely elongated male terminal genitalia, the distribution of the uterus in the forebody and the presence of a uroproct. Mobahincia teirae n. g., n. sp. is reported from Platax teira (Forsskål) in Moreton Bay and off Heron Island and New Caledonia. Recognition of this new genus is based on molecular results and the combination of caeca abutting the posterior body wall and the lack of an anterior body scoop or flanges. The following lepocreadioid species are reported from Moreton Bay for the first time: Bianium arabicum Sey, 1996 in Lagocephalus lunaris (Bloch & Schneider), Diploproctodaeum cf. monstrosum Bray, Cribb & Justine, 2010 in Arothron hispidus (Linnaeus), Multitestis magnacetabulum Mamaev, 1970 and Neomultitestis aspidogastriformis Bray & Cribb, 2003 in Platax teira and Opechona austrobacillaris Bray & Cribb, 1998 in Pomatomus saltatrix (Linnaeus). Bianium plicitum (Linton, 1928) is reported from Torquigener squamicauda (Ogilby) for the first time. Sequences of newly collected specimens of Austroholorchis sprenti (Gibson, 1987) indicate that the species forms a clade with other members of the Aephnidiogenidae, agreeing with its morphology. The phylogenetic status of all newly sequenced species is discussed.     

Representatives of the family Bochianitidae (Ammonoidea) from the Lower Cretaceous of the Crimean Mountains

The heteromorph ammonites of the family Bochianitidae from the Lower Cretaceous of the Crimean Mountains are revised. The validity of the genus Janenschites, separated from the genus Bochianites is confirmed. The species Bochianites neocomiensis (d’Orbigny), B. goubechensis Mandov, B. levis sp. nov. and B. crymensis sp. nov. are described from the Berriasian and the species Janenschites oosteri (Sarasin et Schöndelmayer) and J. incisus sp. nov. are described from the Lower Barremian. The family Bochianitidae first appeared at the beginning of the Berriasian in the southern regions (Africa and the Crimea), and spread to the northern regions of western Europe in the Valanginian-Hauterivian.     

Chromosomes of Ichneumonidae (Hymenoptera): New results and conclusions

New data were obtained on the karyotypes of 12 parasitic wasp species of the family Ichneumonidae: Scambus detritus (2n = 28), S. vesicarius (2n = 28), Pimpla contemplator (2n = 36), Theronia atalantae (2n = 24), Stenomacrus sp. 2 (n = 18, 2n = 36), Phygadeuon sp. 3 (2n = 32), Ichneumon memorator (2n = 24), I. vorax (2n = 22), Lymantrichneumon disparis (2n = 26), Orthopelma mediator (n = 15, 2n = 30), Lissonota buccator (2n = 22), and Trichionotus flexorius (2n = 16). Chromosomes of Anomaloninae were studied for the first time. The data on the karyotype structure of the subfamily Orthopelmatinae were revised. Various aspects of chromosome variability in Ichneumonidae are discussed.