Nitrification and anammox with urea as the energy source

Urea is present in many ecosystems and can be used as an energy source by chemolithotrophic aerobic ammonia oxidizing bacteria (AOB). Thus the utilization of urea in comparison to ammonia, by AOB as well as anaerobic ammonia oxidizing (Anammox) bacteria was investigated, using enrichments cultures, inoculated with activated sludge, and molecular ecological methods. In batch enrichment cultures grown with ammonia a population established in 2 weeks, which was dominated by halophilic and halotolerant AOB as determined by fluorescence in situ hybridization (FISH) experiments, with the 16S rRNA targeting oligonucleotide probe NEU. In other batch enrichment cultures using urea, the AOB population was assessed by PCR amplification, cloning and phylogenetic analysis of amoA and ribosomal 16S rRNA genes. While only one of the 48 16S rRNA gene clones could be identified as AOB (Nitrosomonas oligotropha), the amoA approach revealed two more AOB, Nitrosomonas europaea and Nitrosomonas nitrosa to be present in the enrichment. FISH analysis of the enrichment with probe NEU and newly designed probes for a specific detection of N. oligotropha and N. nitrosa related organisms, respectively, showed that N. oligotropha-like AOB formed about 50% of the total bacterial population. Also N. nitrosa (about 15% of the total population) and N. europaea (about 5% of the total population) were relatively abundant. Additionally, continuous enrichments were performed under oxygen limitation. When ammonia was the energy source, the community in this reactor consisted of Anammox bacteria and AOB hybridizing with probe NEU. As the substrate was changed to urea, AOB related to N. oligotropha became the dominant AOB in this oxygen limited consortium. This resulted in a direct conversion of urea to dinitrogen gas, without the addition of organic carbon.     

Effects of a slow-release urea source on absorption of ammonia and endogenous production of urea by cattle

Three experiments were conducted with Angus or Holstein steers to evaluate effects of dietary urea–calcium (a slow rumen-release urea source) on absorption of ammonia N from the gut and urea N production in the liver. Steers were fed a high-grain diet (Experiment 1) or an all-forage diet (Experiments 2 and 3). Urea or urea–calcium (0.25 g/kg body weight) was dosed into the esophagus (Experiments 1 and 2) or rumen (Experiment 3), and blood samples were serially collected for 180 min. Blood concentrations of ammonia N and urea N were measured in all experiments, and net flux of metabolites across splanchnic tissues was measured in Experiment 3. Compared to urea, urea–calcium reduced (P<0.05) plasma concentrations of ammonia N in steers fed all-forage diets, and tended (P<0.06) to reduce arterial glucose concentrations in Experiment 3. Plasma concentrations of urea N were not affected by treatment in any experiment. Treatment and time post-dosing interactions (P<0.05) in Experiment 3 were due to increased ruminal fluid concentrations of ammonia N, net release of ammonia N by portal-drained viscera and total splanchnic tissues with urea versus urea–calcium treatment shortly after dosing. Similar interactions (P<0.05) indicated that urea caused higher hepatic glucose release and increased l-lactate release by total splanchnic tissues after dosing than urea–calcium. Urea–calcium was effective in mitigating rapid ammonia release in the rumen and subsequent effects on glucose and lactate metabolism.     

Effect of carbon source on compost nitrogen and carbon losses

The effect of C source on N losses by volatilization during composting was measured using four bulking agents, each at three humidity levels and composted in duplicate under passive and active aeration. The bulking agents were pine shavings alone and corrected with soybean, chopped grass hay alone and corrected with urea, long (unchopped) wheat straw and chopped oat straw. The readily available C of each bulking agent was determined by analyzing for BOD5. In 105 l laboratory vessels, the bulking agents were mixed with liquid swine manure and tap water for a C/N of 20 and three humidity levels of 60%, 65% and 70%. While being aerated actively or passively, the mixtures were composted for 21 days. Their initial and final C and N contents were measured to conduct a mass balance analysis and calculate C and N losses. C and N losses were compared to bulking agent BOD5. N losses were compared to C losses. The humidity level and aeration regime had no effect on C and N losses but the N losses were correlated to C losses and only the C losses could be correlated to the BOD5 of the bulking agent. Thus, the N losses are related not only to the availability of C but also to the extent of composting. A relationship established between N and C losses indicated that 85% of the initial total N of the compost was available for microbial degradation and that 70% of the available C was lost as CO2 during the immobilization process.     

The effect of the carbon source on ammonium regulation in Aspergillus nidulans

Summary Ammonium regulation of L-glutamate transport is annuled when L-glutamate is the sole or main carbon source. This shows that ammonium regulation mechanisms are not operative where the substrate of the ammonium repressible system can be used as a carbon as well as a nitrogen source. There is rapid loss of NADP L-glutamate dehydrogenase when glucose is replaced by L-glutamate as a carbon source. This suggests that NADP L-glutamate dehydrogenase may be subject to carbon as well as nitrogen control.     

湿地植物供碳功能与优化

尾水湿地氮的反硝化去除往往受限于碳缺乏。综述了湿地植物供碳促反硝化的主要途径与影响因素,构建了华东地区典型冷、暖季型湿地植物供碳的一般性季节动态模式,以期为发挥湿地植物稳定高效供碳功能、缓解尾水湿地碳缺乏问题提供解决思路。湿地植物的主要供碳途径包括根系分泌、地下有机质分解和地上有机质分解(淋溶)等,湿地植物的供碳动态是物种和环境因子综合影响的结果,存在极大的时空异质性。湿地植物具有很强的供碳促反硝化潜力,地上最大生物量为5 kg/m~2的芦苇全年脱氮潜力可高达0.57 kg N/m~2。在构建的湿地植物生物质积累量和供碳量的一般性模式中,冷、暖季型湿地植物无论是生物质积累量(总生物量)和还是供碳量(分解部分+根系分泌物)均存在显著的季节性差异,以及季节间的互补特征。因此,冷、暖季型湿地植物间进行合理的配置,是发挥湿地植物供碳功能且避免生物质分解引起二次污染的可行性措施。今后在湿地植物供碳定量化研究方法、多种供碳途径的定量化监测、供碳功能调控策略,以及稳定高效供碳促反硝化人工湿地构建等方向需做进一步研究。     

江西省森林碳蓄积过程及碳源/汇的时空格局

森林碳蓄积是研究森林与大气碳交换以及估算森林吸收或排放含碳气体的关键参数,不同年龄森林的碳源/汇功能差异则体现出森林生态系统碳蓄积过程的时间特征。以森林资源清查的样方数据作为数据源,通过刻画主要树种的林分蓄积生长曲线、林龄与净初级生产力(NPP)之间的关系,驱动区域碳收支模型(InTEC)模拟江西省1950—2008年的森林碳蓄积过程,了解山江湖工程实施以来的森林碳源/汇状况。结果表明,20世纪80年代以前,江西省森林年平均NPP波动于450—813 gCm-2a-1之间,年净增生物量碳26.55—36.23 TgC/a,年净增木质林产品碳0.01—0.3 TgC/a;80年代初,NPP和年净增生物量碳分别降至307.39 gC m-2a-1和17.31 TgC/a,而年净增木质林产品碳却高达0.6 TgC/a,说明森林被大量砍伐进入林产品碳库;1985年山江湖工程实施后,大面积造林使得年净增碳蓄积呈现急剧上升趋势,生物量和木质林产品碳蓄积分别上升至目前的42.37 TgC/a和0.79 TgC/a,而平均NPP值增加缓慢、碳汇功能降低,说明林分质量有待提高;90年代后碳汇功能开始稳步增强,说明造林面积的迅速增加是引起江西省森林碳增汇的主要驱动因素,但未来森林增汇潜力应源于森林生长和有效的经营管理。     

碳源对轮枝链霉菌SK-2合成谷氨酰胺转胺酶的影响

研究不同的碳源对轮枝链霉菌(StreptoverticilliumSK-2产谷氨酰胺转胺酶的影响.结果2%甘油是最有效的碳源,其最高酶活达7.89μmol/(min*ml);添加油脂有助于菌体产酶,在各种油脂中,以添加橄榄油效果最好.并进一步研究了甘油和橄榄油作为复合碳源对产酶的影响.     

The hyporheic zone as a source of dissolved organic carbon and carbon gases to a temperate forested stream

The objective of this study was to examine chemical changes in porewaters that occur over small scales (cm) as groundwater flows through the hyporheic zone and discharges to a stream in a temperate forest of northern Wisconsin. Hyporheic-zone porewaters were sampled at discrete depths of 2, 10, 15, 61, and 183 cm at three study sites in the study basin. Chemical profiles of dissolved organic carbon (DOC), CO₂, CH₄, and pH show dramatic changes between 61 cm sediment depth and the water-sediment interface. Unless discrete samples at small depth intervals are taken, these chemical profiles are not accounted for. Similar trends were observed at the three study locations, despite each site having very different hydraulic-flow regimes. Increases in DOC concentration by an order of magnitude from 61 to 15 cm depth with a corresponding decrease in pH and rapid decreases in the molecular weight of the DOC suggest that aliphatic compounds (likely organic acids) are being generated in the hyporheic zone. Estimated efflux rates of DOC, CO₂, and CH₄ to the stream are 6.2, 0.79, 0.13 moles m² d^-1, respectively, with the vast majority of these materials produced in the hyporheic zone. Very little of these materials are accounted for by sampling stream water, suggesting rapid uptake and/or volatilization.     

The utilization ofL-amino acids as carbon source by yeasts of the generaHansenula andTrichosporon

The assimilation of singleL-amino acids as carbon source in the absence of added nitrogen has been studied for all the described species in the generaHansenula andTrichosporon. The range in the number of amino acids used by individual species varied in the two genera, inHansenula from 0 to 6, inTrichosporon from 0 to 16. These characters were considered in relation to the phylogenetic scheme and ecological origin ofHansenula.     

The control of source to sink carbon flux during tuber development in potato

We have used top-down metabolic control analysis to investigate the control of carbon flux through potato (Solanum tuberosum) plants during tuberisation. The metabolism of the potato plant was divided into two blocks of reactions (the source and sink blocks) that communicate through the leaf apoplastic sucrose pool. Flux was measured as the transfer of ¹⁴C from CO₂ to the tuber. Flux and apoplastic sucrose concentration were varied either by changing the light intensity or using transgenic manipulations that specifically affect the source or sink blocks, and elasticity coefficients were measured. We have provided evidence in support of our assumption that apoplastic sucrose is the only communicating metabolite between the source and sink blocks. The elasticity coefficients were used to calculate the flux control coefficients of the source and sink blocks, which were 0.8 and 0.2, respectively. This work suggests that the best strategy for the manipulation of tuber yield in potato will involve increases in photosynthetic capacity, rather than sink metabolism.     

The effects of cold-pretreatment,auxins and carbon source on anther culture of rice

The effects of a cold pretreatment, the concentration of different auxins (2,4-D, NAA and IAA) and the type of carbon source (maltose and sucrose) on the induction of callus from anthers of three parental lines and four rice F₁ hybrids (Japonica × Indica, Indica × Japonica) were studied. The results indicated that a cold pretreatment was essential for the induction of callus from anthers of the parental lines and the F₁ hybrids. These effects were genotype dependent. Auxins were essential for the induction of callus, and the type and concentration of auxins also influenced this process, as well as the type of carbon source. The greatest induction of callus was by the hybrid Morelos A92 × Koshihikari after a cold pretreatment of 8 days using 10.74 M –napthaleneacetic acid and 30 g l^–1 maltose.     

Repeated fed-batch cultivation of Arthrospira (Spirulina) platensis using urea as nitrogen source

Arthrospira (Spirulina) platensis (Nordstedt) Gomont was autotrophically cultivated for biomass production in repeated fed-batch process using urea as nitrogen source, with the aim of making large-scale production easier, increasing cell productivity and then reducing the production costs. It was investigated the influence of the ratio of renewed volume to total volume (R), the urea feeding time (t_f) and the number of successive repeated fed-batch cycles on the maximum cell concentration (X_m), cell productivity (P_x), nitrogen-to-cell conversion yield (Y_x/n), maximum specific growth rate (μ_m) and protein content of dry biomass. The experimental results demonstrated that R = 0.80 and t_f = 6 d were the best cultivation conditions, being able to simultaneously ensure, throughout the three fed-batch cycles, the highest average values of three of the five responses (X_m = 2101 ± 113 mg L^?1, P_x = 219 ± 13 mg L^?1 d^?1 and Y_x/n = 10.3 ± 0.8 g g^?1).     

The effect of carbon source on callus induction and regeneration ability in Pharbitis nil

Flower buds, cotyledons and hypocotyls of Pharbitis nil were used as plant material. Flower buds (1–2 mm long) were excised from 3-week-old plants, grown in soil. Cotyledons of 7-day-old sterile seedlings were cut into 25 mm² squares cotyledons whereas hypocotyls were cut to 1 mm long fragments. Explants were transferred into Petri dishes containing the Murashige and Skoog medium (MS), supplemented with either BA (11 μM·L⁻¹) alone or BA (22 μM·L⁻¹) and NAA (0.55 μM·L⁻¹), and different sugars: sucrose, fructose, glucose, mannose or sorbitol (autoclaved or filter-sterilized). Addition of glucose instead of sucrose to the medium stimulated the induction of callus on flower buds and cotyledonary explants, but inhibited its growth on fragments of hypocotyls. The medium supplemented with fructose (especially filter-sterilized) stimulated the development of flower elements. Organogenesis of shoots and roots on explants was also observed. Flower buds and hypocotyls were able to regenerate both organs. Addition of fructose or glucose to the medium stimulated the organogenesis of shoots, whereas root organogenesis was inhibited on all explants used. Sorbitol strongly inhibited both induction of callus and organogenesis on all explants used.     

Sources of NADPH in yeast vary with carbon source

Production of NADPH in Saccharomyces cerevisiae cells grown on glucose has been attributed to glucose-6-phosphate dehydrogenase (Zwf1p) and a cytosolic aldehyde dehydrogenase (Ald6p) (Grabowska, D., and Chelstowska, A. (2003) J. Biol. Chem. 278, 13984-13988). This was based on compensation by overexpression of Ald6p for phenotypes associated with ZWF1 gene disruption and on the apparent lethality resulting from co-disruption of ZWF1 and ALD6 genes. However, we have found that a zwf1Delta ald6Delta mutant can be constructed by mating when tetrads are dissected on plates with a nonfermentable carbon source (lactate), a condition associated with expression of another enzymatic source of NADPH, cytosolic NADP+-specific isocitrate dehydrogenase (Idp2p). We demonstrated previously that a zwf1Delta idp2Delta mutant loses viability when shifted to medium with oleate or acetate as the carbon source, apparently because of the inadequate supply of NADPH for cellular antioxidant systems. In contrast, the zwf1Delta ald6Delta mutant grows as well as the parental strain in similar shifts. In addition, the zwf1Delta ald6Delta mutant grows slowly but does not lose viability when shifted to culture medium with glucose as the carbon source, and the mutant resumes growth when the glucose is exhausted from the medium. Measurements of NADP(H) levels revealed that NADPH may not be rapidly utilized in the zwf1Delta ald6Delta mutant in glucose medium, perhaps because of a reduction in fatty acid synthesis associated with loss of Ald6p. In contrast, levels of NADP+ rise dramatically in the zwf1Delta idp2Delta mutant in acetate medium, suggesting a decrease in production of NADPH reducing equivalents needed both for biosynthesis and for antioxidant functions.     

Effect of carbon source on aroma production byTrichoderma viride

Summary The effect of carbon source on aroma production by a strain ofTrichoderma viride was studied in static and agitated cultures. Different carbon sources affected the quantity but not the nature of the aroma chemical produced. The formation of the aroma lactone (6-pentyl--pyrone) was also affected by the method of cultivation.

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Resumen Se estudió el efecto de la fuente de carbono en la producción de aromas porTrichoderma viride en cultivos estáticos y en agitación. Las distintas fuentes de carbono utilizadas influyeron en la cantidad pero no en la naturaleza del aroma químico producido. En la formación de un aroma de tipo lactona (6-pentil--pirona) también influyó el método de cultivo.

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Résumé L'effet de la source de carbone sur la production d'arome par une souche deTrichoderma viride a été étudiée en cultures statitiques et agitées. Les différentes sources de carbone modifient la quantité, mais pas la nature chimique, de l'arome produit. La production de l'arome lactonique (6-pentyl--pyrone) est affectée aussi par le mode culture.

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Paper presented at the VII International Conference on the Global Impacts of Applied Microbiology, Helsinki, 12–18 August 1985