A new approach to ammonium sulphate feeding for fed‐batch Arthrospira (Spirulina) platensis cultivation in tubular photobioreactor

Arthrospira platensis was cultivated in tubular photobioreactor using different photosynthetic photon flux densities (PPFD) and protocols of (NH₄)₂SO₄ fed‐batch supply. Results were evaluated by variance analysis selecting maximum cell concentration (X_m), cell productivity (P_x), nitrogen‐to‐cell conversion factor (Y_X/N) and biomass, protein and lipid contents as responses. At PPFD of 120 and 240 μmol‐photons/m² s, a parabolic profile of (NH₄)₂SO₄ addition aiming at producing biomass with 7% nitrogen content ensured X_m values (14.1 and 12.2 g/L, respectively) comparable to those obtained with NaNO₃. At PPFD of 240 μmol‐photons/m² s, P_x (1.69 g/Ld) was 36% higher, although the photosynthetic efficiency (3.0%) was less than one‐half that at PPFD of 120 μmol‐photons/m² s. Biomass was shown to be constituted by about 35% proteins and 10% lipids, without any dependence on PPFD or kind of nitrogen source. These results highlight the possible use of (NH₄)₂SO₄ as alternative, cheap nitrogen source for A. platensis cultivation in tubular photobioreactors. © 2010 American Institute of Chemical Engineers Biotechnol. Prog., 2010     

A function describing all-sized trunk diameter distribution in warm-temperate rain forests

A simple relation (v-lnB) (u-lnx)=c was recognized betweenx as dbh (or individual basal area) andB as the cumulative basal area abovex, for various stands of warm-temperate rain forests of Yakushima Island, southern Japan (v, u andc, parameters). The model parameters explained a difference in the pattern of stand development between secondary succession after clear-felling and gap regeneration within primary forests.     

Exploring the foraging environment of a natural enemy of Callosobruchus maculatus: Spatial egg distribution in stored cowpea

Knowledge of the spatial distribution of stored product insects may reduce the dependency on chemicals for control of these insects. Biological control, for instance, could be improved based on such knowledge. In this paper we describe the three-dimensional spatial oviposition pattern of Callosobruchus maculatus in stored cowpea. Individual C. maculatus females oviposited in clusters of 70±15 (SD) eggs. These clusters were variable in shape. In any cluster 90 to 95% of the eggs fitted into a volume of 19.1±3.5 cm³. The egg density was highest (0.6 eggs bean^–1) at the center of a cluster and decreased towards the periphery. A statistically significant relationship existed between the number of eggs n in a cluster and the cluster volume, V(cm³): V=11.5+0.11n. We also investigated the spatial egg distribution of beetles which emerged from egg clusters such as those produced by individual females. Their oviposition was not confined to one specific area but was scattered throughout the bean mass. A point pattern analysis showed that the density of the `parent' cluster had no effect on the spatial egg pattern. These results give insight into the foraging environment which the egg parasitoid Uscana lariophaga, a promising candidate for biological control of C. maculatus, is facing. We argue that the probability p of encountering at least one other bean with eggs after a parasitization is a function of the number n of beans that are visited: p=1–0.42 (0.37)^(n–1).     

Further Study on the Statistical Test to Detect Spatial Pattern

In the study of spatial patterns, the statistic I' = (n — 1)s²/x was commonly used. In this paper, we found that x — s² has an approximated normal distribution with zero mean if the x_i's (i = 1 to n) are independent identically distributed Poisson variables. Based on this conclusion, the hypothesis that a point pattern is completely random can be tested directly. And a method for the test of spatial patterns was proposed which can be sued as an alternative to the Chi-square based dispersion index test.     

Recombinant Helicoverpa armigera nucleopolyhedrovirus with arthropod‐specific neurotoxin gene RjAa17f from Rhopalurus junceus enhances the virulence against the host larvae

A recombinant Helicoverpa armigera nucleopolyhedrovirus (HearNPV) expressing the insect‐selective neurotoxin (RjAa17f) from Cuban scorpion Rhopalurus junceus was constructed by replacing the UDP‐glucosyltransferase gene (egt) using λ‐red homologous recombination system. Another egt deleted control HearNPV was constructed in a similar way by inserting egfp gene into the egt locus. One‐step viral growth curve and viral DNA replication curve analysis confirmed that the recombination did not affect the viral growth and DNA replication in host cells. There is no discernable difference in occlusion‐body morphogenesis between RjAa17f‐HearNPV, Egfp‐HearNPV and HZ8‐HearNPV, which was confirmed by transmission electron microscopy analysis. However, the insecticidal activity of RjAa17f‐HearNPV is enhanced against the third instar H. armigera larvae according to the bioassay on virulence comparison. There is a dramatic reduction (56.9%) in median lethal dose (LD₅₀) and also a reduction (13.4%) in median survival time (ST₅₀) for the recombinant RjAa17f‐HearNPV compared to the HZ8‐HearNPV, but only a 27.5% reduction in LD₅₀ and 10.1% reduction in ST₅₀ value when Egfp‐HearNPV is compared with HZ8‐HearNPV. The daily diet consumption analysis showed that the RjAa17f‐HearNPV was able to inhibit the infected larvae feeding compared with the egt minus HearNPV. These results demonstrated that this novel recombinant RjAa17f‐HearNPV could improve the insecticidal effect against its host insects and RjAa17f could be a considerable candidate for other recombinant baculovirus constructions.     

Optimal Fixing of the Bandwidth-Parameter for the Empirical Regression1,2

The estimator ?₀(x) of the regression r(x) = E (Y | × = x) from measured points (x_i, y_i), i = 1(1) n, of a continuous two-dimensional random variable (X, Y) with unknown continuous density function f(x, y) and with moments up to the second order can be made with the help of a density estimation f?₀(x, y) (see e.g. SCHMERLING and PEIL, 1980). Here f?₀(x, y) still contains free parameters (so-called band-width-parameters), the values of which have to be optimally fixed in the concrete case. This fixing can be done by using a modification of the maximum-likelihood principle including jackknife techniques. The parameter values can be also found from the estimators for r(x). Here the cross-validation principle can be applied. Some numerical aspects of these possibilities for optimally fixing the bandwidth-parameter are discussed by means of examples. If ?₀(x) is used as a smoothing operator for time series the optimal choice of the parameter values is dependent on the purpose of application of the smoothed time series. The fixing will then be done by considering the so-called filter-characteristic of ?C₀(x).     

Perfect harmony: the discrete dynamics of cooperation

We study the discrete model for cooperation as expressed through the dynamics of the family of noninvertible planar maps (x, y) (x exp(r(1 – x) + sy), y exp(r(1 – y) + sx)), with parameters r, s > 0. We prove that the map is proper in the open positive quadrant and describe its various stretching and folding actions. We determine conditions for a Hopf bifurcation — probably one of a cascade of double, quadruple, ... limit cycles, as a curve is followed in parameter space. For r > s an approximating version of the map is dissipative and permanent in the positive quadrant. We include the results of an extensive computer simulation, including a bifurcation diagram (y vs. r, with s fixed) through which is cut a number of x–y phase-plane plots; (an r–y curve penetrates each plot like a thread through cards). These indicate a complex dynamical evolution for cooperation, from stable cycle to strange attractor. A general conclusion is that the benefit of cooperation can be relatively high average values at the cost of oscillations of high amplitude.     

Characterization of the WEIBULL Distribution by Properties of Order Statistics

Let X_1:n, X_2:n, X_3:n…, X_n:n be the order statistics of n independent random variables with the common (absolutely continuous strictly increasing) distribution function F. The main results given in this article are:

• 1 For any fixed r and two distinct numbers s₁ and s₂ (1<r<s₁<s₂≦n) the distributions of V_i and W_i (defined in (1.11) and (1.12) are identical for i = 1,2 iff F(x) is WEIBULL (1.2).
• 2 The statistics D₁ and D₂ (as in (1.8) and (1.9)) are independent iff F(x) is WEIBULL (1.2).
• 3 The statistics U_i (1≦j≦n?1) and X_i:n (i ≦ j) are independent iff F(x) is WEIBULL (1.2).
• 4 Let X, X₁, X₂, …, X_k be random variables such that

These conditions are necessary and sufficient for F(x) to be WEIBULL .     

Cumulative Damage Survival Models for the Randomized Complete Block Design

A continuous time discrete state cumulative damage process {X(t), t ≥ 0} is considered, based on a non‐homogeneous Poisson hit‐count process and discrete distribution of damage per hit, which can be negative binomial, Neyman type A, Polya‐Aeppli or Lagrangian Poisson. Intensity functions considered for the Poisson process comprise a flexible three‐parameter family. The survival function is S(t) = P(X(t) ≤ L) where L is fixed. Individual variation is accounted for within the construction for the initial damage distribution {P(X(0) = x) | x = 0, 1, …,}. This distribution has an essential cut‐off before x = L and the distribution of L – X(0) may be considered a tolerance distribution. A multivariate extension appropriate for the randomized complete block design is developed by constructing dependence in the initial damage distributions. Our multivariate model is applied (via maximum likelihood) to litter‐matched tumorigenesis data for rats. The litter effect accounts for 5.9 percent of the variance of the individual effect. Cumulative damage hazard functions are compared to nonparametric hazard functions and to hazard functions obtained from the PVF‐Weibull frailty model. The cumulative damage model has greater dimensionality for interpretation compared to other models, owing principally to the intensity function part of the model.     

Synergistic effects of atmospheric pressure plasma‐emitted components on DNA oligomers: a Raman spectroscopic study

Cold atmospheric‐pressure plasmas have become of increasing importance in sterilization processes especially with the growing prevalence of multi‐resistant bacteria. Albeit the potential for technological application is obvious, much less is known about the molecular mechanisms underlying bacterial inactivation. X‐jet technology separates plasma‐generated reactive particles and photons, thus allowing the investigation of their individual and joint effects on DNA. Raman spectroscopy shows that particles and photons cause different modifications in DNA single and double strands. The treatment with the combination of particles and photons does not only result in cumulative, but in synergistic effects. Profilometry confirms that etching is a minor contributor to the observed DNA damage in vitro.

Schematics of DNA oligomer treatment with cold atmospheric‐pressure plasma.     

Characterization of excitation beam on second-harmonic generation in fibrillous type I collagen

Following our established theoretical model to deal with the second-harmonic generation (SHG) excited by a linearly polarized focused beam in type I collagen, in this paper, we further quantitatively characterize the differences between SHG emissions in type I collagen excited by collimated and focused beams. The effects of the linear polarization angle (α) and the fibril polarity characterized by the hyperpolarizability ratio ρ on SHG emission has been compared under collimated and focused beam excitation, respectively. In particular, SHG emission components along the i axis ( I_2w,i )\left( {I_{2\omega {,}i} } \right) (i = x,y,z), the induced SHG emission deviation angle γ _ij , and the detected SHG signals (I _2ω,ij ) in the ij plane by rotating the applied polarizer angle φ _ij have been investigated (i = x, x, y; j = y, z, z). Results show that under our simulation model, SHG emission in the xy plane, such as I _2ω,x ,I _2ω,y ,γ _xy and I _2ω,xy varying as polarization angle (α) under collimated and focused light, presents no significant difference. The reverse of the fibril polarity has induced great impact on I _2ω,x ,γ _xy and I _2ω,xy in both collimated and focused light. I _2ω,x and γ _xy show similarity, but I _2ω,xy at α = 30° demonstrates a slight difference in focused light to that in collimated light. Under focused light, the reverse of fibril polarity causes obvious changes of the collected SHG intensity I _2ω,xz and I _2ω,yz at a special polarization angle α = 60° and γ _xz , γ _yz along α.     

Determination of Number and Size of Spherical Particles from Extraction Replicas

For spherical particles randomly dispersed in the space of a specimen the estimators of the parameters of the space structure from the measurements obtained from extraction replicas are given. First an arbitrary form of the probability density function f(x) of the diameter X and then the generalized RAYLEIGH and lognormal distributions of X are considered. Unbiased estimators of the space parameters and of parameters of these distributions are found. The variances of these estimators are given and unbiased estimators of these variances are determined.     

Measurement of optical properties of pig esophagus by using a modified spectrometer set‐up

Optical properties (μ_a, μ_s and g) of certain human tissue types such as skin and blood have been very well investigated. However until today, for internal body organs such as the esophagus they are not well characterized. For ex‐vivo measurements “Inverse Adding Doubling” (IAD) and Inverse Monte‐Carlo‐Simulation (IMCS) are state of the art. Both methods need the measurement of the collimated transmission. Current methods lack a proper way of measuring the collimated transmission. Hence, this measurement of the g‐factor has a systematic error. Therefore, for the measurement of the collimated transmission, a new approach has been developed and evaluated with intralipid. Finally, the optical properties of mucosa, sub mucosa, muscularis and adventitia of pig esophagus tissue are calculated with IAD. The results are promising and in agreement with published literature.

     

A New Functional Equation Analogous to CAUCHT-PEXIDER Functional Equation and its Application

The CAUCHY-PEXIDER functional equation H (x±y)=F(x) G(y) is generalized to the form H ((x^c±y^c)^1/c) = F(x) G(y), c≠0, assuming the function H(x) possesses a measurable majorant on a set of positive measure. The result is used to obtain a characterization of WEIBULL distribution. This functional equation is generalized to functions of vector variables.     

Defining patch contribution in source-sink metapopulations: the importance of including dispersal and its relevance to marine systems

In metapopulations, individual patch contribution (source or sink) is typically calculated as a patch growth rate (the intrinsic lambda, _I) dependent only upon local demographics. We demonstrate that when dispersal is explicitly included in the model, the growth rates for all patches calculated in an analogous manner (the observed lambda, _O) equilibrate to the overall metapopulation growth rate and thus no longer serve as a useful reflection of the demographic and dispersive characteristics of a given patch. In these situations we suggest an alternative method of estimating patch contribution (the contribution lambda, _C) in which a patch is decremented for losses that occur within it and credited for gains that occur anywhere in the metapopulation because of it. We compare values of _I, _O, and _C for individual patches in discrete-time density-independent metapopulation models of two organisms with very different life histories, mayflies with adult dispersal, and reef fish with larval dispersal. Results confirm that when dispersal is included only _C clearly indicates the contribution of a particular patch. _I–_C comparisons indicate that inclusion of dispersal in the mayfly model was only important if connectivity patterns were random or directional. In the reef fish model, however, results were very different when dispersal was included and there were many cases of patches being misidentified (e.g., as a source when it was really a sink) depending upon the metric used (_I or _C). Our results demonstrate the importance of including dispersal in metapopulation models when considering the contribution of individual patches.     

Optical hyperspectral imaging in microscopy and spectroscopy – a review of data acquisition

Rather than simply acting as a photographic camera capturing two‐dimensional (x, y) intensity images or a spectrometer acquiring spectra (λ), a hyperspectral imager measures entire three‐dimensional (x, y, λ) datacubes for multivariate analysis, providing structural, molecular, and functional information about biological cells or tissue with unprecedented detail. Such data also gives clinical insights for disease diagnosis and treatment. We summarize the principles underpinning this technology, highlight its practical implementation, and discuss its recent applications at microscopic to macroscopic scales.

Datacube acquisition strategies in hyperspectral imaging x, y, spatial coordinates; λ, wavelength.     

Current progress of the biological single-ion microbeam at FUDAN

A biological microbeam for precisely positioned single-ion/single cell irradiation is built in the Institute of Modern Physics in Fudan University, Shanghai, China, based on the tandem accelerator (2 × 3MV) in the laboratory. In this paper, the developing progress of the FUDAN microbeam is reported, including the newly constructed beam line, the microbeam collimator, the ion detection system, and the cell-imaging and targeting systems. Statistical models are proposed for evaluating the spatial resolution and dosage precision of the microbeam. By taking the collimated ions as a Gaussian beam, the spatial resolution can be evaluated by the full width at half maximum of the 2-D Gaussian distribution, which is determined by fitting the proportions of peripheral pits outside specific radii in the pit clusters etched on ion track detectors to a 2-D Gaussian distribution. In the preset hitting of defined ion number, by taking the real delivered number of ions as an independent identically distributed random variable (iidrv), according to the Law of Large Numbers and Central Limit Theorem, the expected value μ and standard deviation σ of the real delivered ion number in a preset N-ion hitting can be determined by approaching the normal distribution of N (μ, σ ²/n) with the proportions of the mean counts of pits in multiple pit clusters on ion track detectors. By the values of μ, σ and additional assumptions, statistical dosage precision evaluations can be made on the preset hitting. From the linear fit curve of μ(N) and the power function fit curve of σ(N) on different preset ion numbers, characteristic factors k, b, A, p can be extracted for a precision evaluation independent of the specific preset ion number.     

Direct Nanoscale Characterization of Deep Levels in AgCuInGaSe2 Using Electron Energy‐Loss Spectroscopy in the Scanning Transmission Electron Microscope

A new experimental framework for the characterization of defects in semiconductors is demonstrated. Through the direct, energy‐resolved correlation of three analytical techniques spanning six orders of magnitude in spatial resolution, a critical mid‐bandgap electronic trap level (E_V + 0.56 eV) within Ag_0.2Cu_0.8In_1?xGa_xSe₂ is traced to its nanoscale physical location and chemical source. This is achieved through a stepwise, site‐specific correlated characterization workflow consisting of device‐scale (≈1 mm²) deep level transient spectroscopy (DLTS) to survey the traps present, scanning probe–based DLTS (scanning‐DLTS) for mesoscale‐resolved (hundreds of nanometers) mapping of the target trap state's spatial distribution, and scanning transmission electron microscope based electron energy‐loss spectroscopy (STEM‐EELS) and X‐ray energy‐dispersive spectroscopy for nanoscale energy‐, structure, and chemical‐resolved investigation of the defect source. This first demonstration of the direct observation of sub‐bandgap defect levels via STEM‐EELS, combined with the DLTS methods, provides strong evidence that the long‐suspected Cu_In/Ga substitutional defects are indeed the most likely source of the E_V + 0.56 eV trap state and serves as a key example of this approach for the fundamental identification of defects within semiconductors, in general.     

大兴安岭次生林区优势种落叶松分布格局及竞争作用

竞争是形成特定群落结构、构成分布格局的基本驱动力之一,树种的空间分布和大小并不是相互独立的,而是广泛受到竞争过程影响。在大兴安岭设置一块具有代表性的天然次生林恢复样地,采用点格局分析中的最近邻体距离G（r）函数、双关联函数g（r）和基于个体胸径标记的点格局分析方法同时结合4种点格局零模型（完全随机模型、均值托马斯模型、随机标签模型、先决条件零模型）研究分析大兴安岭次生林区优势种落叶松不同生活史阶段的分布格局、关联性及竞争作用。研究结果显示：落叶松不同发育阶段分布格局不同、同一发育阶段不同研究尺度分布格局也不同;落叶松种群内存在潜在的竞争、且竞争作用与龄级和研究尺度有关;落叶松幼龄个体在小尺度（r<5m）下的聚集分布是由扩散限制作用和竞争作用所导致;落叶松种群内成龄与幼龄个体间有较强的正关联性、成龄个体对幼龄个体在小尺度下有明显的庇护作用;标记点格局分析方法在检测植物群落中的竞争作用时敏感性较高。     

The number of species occurring in a sample of a biotic community and its connections with species-abundance relationship and spatial distribution

Connections among species-abundance (i-m _i ), species-frequency (i-F _i ), and species-sample size (S _n -n) relationships were examined on the basis of the mapping data of a natural forest in Thailand. The spatial distribution of individual trees without any discrimination of species was nearly random. Provided that the spatial distribution of each species was random, thei-m _i and thei-F _i relationship was reconstructed from each other in terms of the total number of species (S) and the total number of individuals (N) in the data. The number of species (S _n ) in a subsample consisting ofn individuals was then obtained from thei-F _i relationship. Logarithm ofS _n increased with logn and showed a convex curve through the origin. The values of diversity indices based onN andS(orn andS _n ) were affected by sample size. These trends were further examined on the basis of 944 data sets of biotic communities and three mathematical models of anS-N relationship. The properties of species-area relation were discussed in the light of these results.