Correspondences between classifications and between classes of entities in molecular genetics

Certain correspondences appear between the classifications and between the classes of various entities at molecular genetic level: types of fundamental correspondences between classifications and between classes of normal entities, on the one hand, and of mutant entities on the other hand; ranks of correspondences between classifications and between classes of entities. The concept of universality of the genetic code was reformulated on the basis of the above correspondences.     

Relationships among element contents in the medial meniscus

To elucidate compositional changes of elements in the meniscus with aging, the authors investigated the relationships among elements in the medial meniscus by inductively coupled plasma-atomic emission spectrometry. The subjects consisted of 16 men and 7 women, ranging in age from 65 to 93 yr. In the left medial meniscus, extremely significant correlations were found both between calcium and phosphorus contents and between sulfur and magnesium contents, whereas significant correlations were found between calcium and either iron or zinc contents, between phosphorus and either iron or zinc contents, and between iron and zinc contents. On the other hand, in the right medial meniscus, there were only an extremely significant correlation between calcium and phosphorus contents and a significant correlation between sulfur and magnesium contents. The common finding between the left and right medial menisci was an extremely significant correlation between calcium and phosphorus contents and a significant correlation between sulfur and magnesium contents.     

Analysis of the community structure of yeasts associated with the decaying stems of cactus. I.Stenocereus gummosus

Yeast communities of decayingStenocereus gummosus were analyzed for spatial, temporal, and physiological characteristics. Analysis of random samples within plants, between plants, and between localities shows that the species proportions of the yeast community are relatively constant within plants and between localities, but that there is significant variability between rotting plants. It is suggested that the increased variability between plants represents sampling of different stages of succession. The physiological abilities of the yeast community also show a relatively constant pattern within plants and between localities yet more variability between plants.The variablity profiles of species proportions and community physiological characters are demonstrated to be correlated within and between plants. This observation is an extension of the Kluge-Kerfoot phenomenon to the level of the community. The correlation of within and between plant variability profiles is suggested to be a result of the temporal and spatial availability of resources during the stages of rotting plant succession. The community structure is thus postulated to result from a set of possible future resource states of the habitat.     

内蒙古白绒山羊若干数量性状遗传参数的研究

本研究应用女母回归法、公畜内女母回归法、半同胞相关法和单元内半同胞相关法对内蒙古阿尔巴斯白绒山羊的产绒量、绒厚、毛长、体重、绒伸直长度和细度等六个性状的遗传参数进行了估测。结果表明：（1）绒量遗传力介于0.26～0.45之间;绒厚遗传力介于0.33～0.56之间;毛长遗传力介于0.23～0.32之间;体重的遗传力介于0.1 6～0.36之间;绒伸直长度遗传力为0.24;绒细度的遗传力为0.14。（2）产绒量与绒厚、绒厚与毛长、长度与绒厚、长度与毛长的遗传相关分别介于0.33～0.79、0.51～0.69 、0.38～0.60、0.74～0.90之间,存在较强的正向遗传相关;绒量与毛长、绒量与体重、绒厚与体重、细度与绒厚、细度与绒量、细度与体重的遗传相关分别为0.11～0.38、0 .06～0.17、0.15～0.36、0.02～0.11、0.24～0.35、0.13～0.32之间,存在较弱的正向遗传相关;毛长与体重、长度与绒量、长度与体重、长度与细度、细度与毛长之间的遗传相关介于-0.14～-0.28、-0.09～-0.20、-0.18～-0.23、-0.27～-0.31、-0 .17～-0.28之间,存在中等偏弱的负向遗传相关。（3）绒量、绒厚、毛长、体重的重复率分别为0.42、0.27、0.59、0.18。     

近20年藏北地区AVHRR NDVI与气候因子的关系

利用藏北那曲地区1981~2001年NOAA/AVHRR的旬合成NDVI资料和6个站的逐日气象资料,分析了(归一化指数NDVI)的年内和年际变化规律以及NDVI与8个气候要素的相关关系,主要结论:影响NDVI年变化最显著的气候因子是温度,其中水汽压与NDVI的相关程度明显大于降水量;日照时数与NDVI呈负相关;NDVI与日照时数的滞后时间约0~10d,与风速没有滞后现象,与潜在蒸散、温度、水汽压和降水约20~40d;影响NDVI年际变化最显著的气候因子是潜在蒸散量。     

The Trade-Off between Female Fertility and Longevity during the Epidemiological Transition in the Netherlands

Several hypotheses have been put forward to explain the relationship between women’s fertility and their post-reproductive longevity. In this study, we focus on the disposable soma theory, which posits that a negative relationship between women’s fertility and longevity can be understood as an evolutionary trade-off between reproduction and survival. We examine the relationship between fertility and longevity during the epidemiological transition in the Netherlands. This period of rapid decline in mortality from infectious diseases offers a good opportunity to study the relationship between fertility and longevity, using registry data from 6,359 women born in The Netherlands between 1850 and 1910. We hypothesize that an initially negative relationship between women’s fertility and their longevity gradually turns less negative during the epidemiological transition, because of decreasing costs of higher parities. An initially inversed U-shaped association between fertility and longevity changes to zero during the epidemiological transition. This does suggest a diminishing environmental pressure on fertility. However, we find no evidence of an initial linear trade-off between fertility and post-reproductive survival.     

Phase-Coherence Transitions and Communication in the Gamma Range between Delay-Coupled Neuronal Populations

Synchronization between neuronal populations plays an important role in information transmission between brain areas. In particular, collective oscillations emerging from the synchronized activity of thousands of neurons can increase the functional connectivity between neural assemblies by coherently coordinating their phases. This synchrony of neuronal activity can take place within a cortical patch or between different cortical regions. While short-range interactions between neurons involve just a few milliseconds, communication through long-range projections between different regions could take up to tens of milliseconds. How these heterogeneous transmission delays affect communication between neuronal populations is not well known. To address this question, we have studied the dynamics of two bidirectionally delayed-coupled neuronal populations using conductance-based spiking models, examining how different synaptic delays give rise to in-phase/anti-phase transitions at particular frequencies within the gamma range, and how this behavior is related to the phase coherence between the two populations at different frequencies. We have used spectral analysis and information theory to quantify the information exchanged between the two networks. For different transmission delays between the two coupled populations, we analyze how the local field potential and multi-unit activity calculated from one population convey information in response to a set of external inputs applied to the other population. The results confirm that zero-lag synchronization maximizes information transmission, although out-of-phase synchronization allows for efficient communication provided the coupling delay, the phase lag between the populations, and the frequency of the oscillations are properly matched.     

Family size,the physical environment,and socioeconomic effects across the stature distribution

A neglected area in historical stature studies is the relationship between stature and family size. Using robust statistics and a large 19th century data set, this study documents a positive relationship between stature and family size across the stature distribution. The relationship between material inequality and health is the subject of considerable debate, and there was a positive relationship between stature and wealth and an inverse relationship between stature and material inequality. After controlling for family size and wealth variables, the paper reports a positive relationship between the physical environment and stature.     

Chromosomal Translocations Generated by High-Frequency Meiotic Recombination between Repeated Yeast Genes

We have examined meiotic and mitotic recombination between repeated genes on nonhomologous chromosomes in the yeast Saccharomyces cerevisiae. The results of these experiments can be summarized in three statements. First, gene conversion events between repeats on nonhomologous chromosomes occur frequently in meiosis. The frequency of such conversion events is only 17-fold less than the analogous frequency of conversion between genes at allelic positions on homologous chromosomes. Second, meiotic and mitotic conversion events between repeated genes on nonhomologous chromosomes are associated with reciprocal recombination to the same extent as conversion between allelic sequences. The reciprocal exchanges between the repeated genes result in chromosomal translocations. Finally, recombination between repeated genes on nonhomologous chromosomes occurs much more frequently in meiosis than in mitosis.     

Correlations of trace element levels within and between different normal autopsy tissues analyzed by inductively coupled plasma atomic emission spectrometry (ICP-AES)

Imbalance in trace metal metabolism may lead to metal interactions that may be of patho-physiological importance. Knowledge of the relation between trace metals in normal tissues is needed to assess abnormal deviations associated with disease. In this study correlations between Cu, Co, Cr, Fe, Mn, Ni, Se, Zn, Al, Ba, Cd, Pb and Sr within the same and between 6 different, normal autopsy tissues were determined using Spearman rank correlation analysis based on analytical data obtained by inductively coupled plasma atomic emission spectrometry (ICP-AES). Fe-Co were correlated in most tissues. Cu-Mn, Zn-Cu, Zn-Mn and Zn-Cd were highly correlated in the kidney medulla. Ni-Ni, Sr-Sr and Cd-Cd were correlated between several tissues, while Fe-Fe, Zn-Zn and Cu-Cu were correlated between kidney cortex and medulla. Mn-Mn was highly correlated between the liver and brain front lobe, cerebellum and heart. High correlations were found for Ni-Co and for Se-Mn between the kidney cortex and brain front lobe and pancreas respectively. Inverse correlations were found for Se-Cd between kidney cortex and cerebellum, for Se-Cd and Cd-Zn between kidney medulla and heart, for Co-Sr and Fe-Sr between the liver and kidney cortex and heart respectively, and for Sr-Mn between kidney medulla and pancreas. A large number of trace elements are statistically correlated within and between different, normal tissues. Knowledge of these correlations may contribute to increase the understanding of kinetic interactions of trace metals in the body and the role of such interactions in normal and disturbed trace metal metabolism.     

Biochemical genetic stock structure of the southern African anchovy, Engraulis capensis Gilchrist

The geographical distributions of inherited biochemical markers were used to measure the amount of genetic isolation between stocks of Namibian and South African anchovy, Engraulis capensis . A contingency-table analysis of allele frequencies for 10 polymorphic protein-coding loci revealed no significant frequency differences between spawning areas. The average Nei genetic distance between samples was 0.0003 and there were no geographic trends in the amount of genetic distance between populations. Average population heterozygosity for 31 loci was 0.115 and this accounted for 99.26% of the total genetic variation. The remaining 0.24% was due to all temporal and spatial differences combined. The observed amount of genetic divergence between populations was used to estimate the amount of migration between spawning areas, using the stepping-stone model of migration. As few as 13 migrants may account for the observed genetic divergence between spawning areas. The validity of using the genetic stock concept in the management of marine fishes is discussed.     

Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between single nucleotide polymorphisms

Effectiveness of marker-assisted selection (MAS) and quantitative trait locus (QTL) mapping using population-wide linkage disequilibrium (LD) between markers and QTLs depends on the extent of LD and how it declines with distance between markers and QTLs in a population. Marker-QTL LD can be predicted from LD between markers. Our previous work evaluated LD measures between multi-allelic markers as predictors of usable LD of multi-allelic markers with QTLs. Since single nucleotide polymorphisms (SNPs) are the current marker of choice for high-density genotyping and LD-mapping of QTLs, the objective of this study was to use LD between multi-allelic markers to predict LD among biallelic SNPs or between SNPs and QTLs. Observable LD between multi-allelic markers was evaluated using nine measures. These included two pooled and standardized measures of LD between pairs of alleles at two markers based on Lewontin's LD measure, two pooled measures of squared correlations between alleles, one standardized measure using Hardy-Weinberg heterozygosities, and four measures based on the chi-square statistic for testing for association between alleles at two loci. The standardized chi-square measure that best predicted usable LD between multi-allelic markers and QTLs, based on our previous work, overestimated usable SNP-SNP or SNP-QTL LD. Instead, three other measures were found to be good predictors of usable SNP-SNP or SNP-QTL LD when LD is generated by drift. Therefore, the LD measure between multi-allelic markers that is best for predicting usable LD in a population depends on the type of markers (i.e. multi-allelic or biallelic) that will eventually be used for QTL mapping or MAS.     

Theory of nucleus breeding schemes with overlapping generations

Summary Explicit methods are derived for estimating steady-state genetic responses and genetic differences between nucleus and base progeny crops in open nucleus breeding schemes which utilize genetic differences between progeny groups with parents of different ages or between age groups. Explicit methods are also given for estimating proportions which should be selected from the different nucleus and base selection groups so as to maximise genetic responses under each of a range of selection methods. Some basic differences between selection programmes utilizing genetic differences between progeny groups with parents of different ages and those utilizing genetic differences between age groups in nucleus breeding schemes are summarized.     

壳斗科次生木质部水分输导分子间连接通道结构的研究

壳斗科次生木质部水分运输聚合体及其连接通道结构,根据水分运输方向可分纵向和横向两大系统。水分纵向运输通道有导管分子间的穿孔,导管分子侧壁间的管间纹孔,导管分子与无穿孔管状分子间的侧壁纹孔,无穿孔管状分子与无穿孔管状分子间的侧壁纹孔。     

白腰雪雀分类地位的商榷

自腰雪雀Onychostruthus taczanowskii(Przewalski)的分类地位比较混乱.在早期的分类系统中,它被归属于雪雀属Montifringilla下.后期由于生态习性与行为特征的不同,被划分至地雀属Pyrgilauda下;又有将它划分为独立属--高原雀属Onychostruthus的观点.本文结合身体量衡度数值特征、外部形态特征以及遗传差异上的研究,综合探讨白腰雪雀的分类地位.对量衡度特征的因子分析发现:白腰雪雀与地雀属种类在体长、体重、翅长、尾长、嘴长与跗蹠长上明显不同,其体形明显偏大.形态特征的聚类分析显示:白腰雪雀与地雀属种类的平均特征差异为0.3902～0.5122,而这些种类间平均特征差异为0.1281～0.2195.比较属间差异发现:石雀Petronia petronia与地雀属种类为0.4878～0.5385,树麻雀Passer montanus与地雀属种类为0.4872～0.5610.麻雀属与石雀属为0.3415,这些结果显示自腰雪雀与地雀属种类的差异已经达到石雀属、麻雀属与地雀属属间的差异.通过比较白腰雪雀与石雀的遗传差异(0.2578),地雀属种类与石雀的遗传差异(0.2386～0.3193),发现白腰雪雀与地雀属种类具有较大的遗传差异(0.2267～0.3143),几近于地雀属与石雀属间的差异.综合量衡度、形态以及遗传等特征的分析结果,作者认为白腰雪雀与地雀属种类有较大的差异,两者间的差异已经达到了它们与近缘属石雀属和麻雀属间的差异,以及近缘属之间的差异,因此,建议白腰雪雀应作为一个独立的属,高原雀属Onychostruthus.     

Floristic relationships between Eastern Asia and North America: test of Gray's hypothesis

Similarities in the temperate floras of eastern Asia and North America have been appreciated for more than 200 yr, but the generality of the floristic relationships among eastern Asia (EAS), eastern North America (ENA), and western North America (WNA), postulated by Asa Gray about 150 yr ago, has not been tested until now. In this article, floristic relationships based on genera shared among EAS, ENA, and WNA were examined at different spatial scales for different phylogenetic groups using complete floras. Floristic similarity between EAS and ENA is higher than that between EAS and WNA, and the floras of ENA and WNA are more closely related to each other than are the floras of EAS and ENA. Compared with ENA and WNA, the number of genera common to EAS and ENA is significantly higher in basal angiosperms and significantly lower in asterids. Floristic similarities tend to decrease from more basal to more modern lineages between EAS and ENA and between EAS and WNA but not between ENA and WNA. Similarly, from more basal to more modern divisions, the fraction of shared genera decreases between EAS and ENA and between EAS and WNA, whereas the floristic similarity between ENA and WNA tends to increase. Furthermore, floristic similarity between EAS and ENA increases with latitude. The causes of the observed patterns of floristic similarity between EAS, ENA, and WNA are discussed.     

Variation in sex ratio between progeny groups in dairy cattle

Summary Highly significant differences between progeny groups have been found in the Israeli-Frisian breed of cattle. The standard deviations between groups in the proportion of males was estimated to be 1.5%. Significant correlations between sire and son and between half-sibs in the sex ratio of their progeny suggest that the differences may have a genetic basis.     

Post-conflict Social Events in Wild Mountain Gorillas (Mammalia,Hominoidea). I. Social Interactions between Opponents

Researchers have documented elevated rates of affinitive interaction between opponents shortly after aggressive conflicts, or reconciliation, in many primate species. Reconciliation may ameliorate the immediate negative effects of aggression by reducing the chance of further aggression between opponents and thus reducing tension, and may avert or repair damage to long-term social relationships important to the animals' fitness. Data on post-conflict interactions between opponents in two groups of wild mountain gorillas (Gorilla gorilla beringei) fail to show reconciliation after conflicts between females, between males, or between immatures, but females seem to commonly reconcile themselves with males after receipt of male aggression. Females and subordinate males often avoid same-sex opponents after conflicts. Females commonly retaliate against female aggressors, and post-conflict rates of aggression between females are higher than baseline levels. Females may not need to achieve reconciliation with each other because relationships between co-resident relatives are resiliant, while those between non-relatives are mostly neutral to antagonistic. Males are, however, important social partners and protectors of females, and female transfer is common. Thus, the results strongly support the ‘important relationships’ hypothesis for the function of reconciliation.     

Sequence variations within protein families are linearly related to structural variations

It is commonly believed that similarities between the sequences of two proteins infer similarities between their structures. Sequence alignments reliably recognize pairs of protein of similar structures provided that the percentage sequence identity between their two sequences is sufficiently high. This distinction, however, is statistically less reliable when the percentage sequence identity is lower than 30% and little is known then about the detailed relationship between the two measures of similarity. Here, we investigate the inverse correlation between structural similarity and sequence similarity on 12 protein structure families. We define the structure similarity between two proteins as the cRMS distance between their structures. The sequence similarity for a pair of proteins is measured as the mean distance between the sequences in the subsets of sequence space compatible with their structures. We obtain an approximation of the sequence space compatible with a protein by designing a collection of protein sequences both stable and specific to the structure of that protein. Using these measures of sequence and structure similarities, we find that structural changes within a protein family are linearly related to changes in sequence similarity.     

Hybridization between two parapatric ranid frog species in the northern Sierra Nevada,California, USA

Contact zones between species provide a unique opportunity to test whether taxa can hybridize or not. Cross‐breeding or hybridization between closely related taxa can promote gene flow (introgression) between species, adaptation, or even speciation. Though hybridization events may be short‐lived and difficult to detect in the field, genetic data can provide information about the level of introgression between closely related taxa. Hybridization can promote introgression between species, which may be an important evolutionary mechanism for either homogenization (reversing initial divergence between species) or reproductive isolation (potentially leading to speciation). Here, we used thousands of genetic markers from nuclear DNA to detect hybridization between two parapatric frog species (Rana boylii and Rana sierrae) in the Sierra Nevada of California. Based on principal components analysis, admixture, and analysis of heterozygosity at species diagnostic SNPs, we detected two F1 hybrid individuals in the Feather River basin, as well as a weak signal of introgression and gene flow between the frog species compared with frog populations from two other adjacent watersheds. This study provides the first documentation of hybridization and introgression between these two species, which are of conservation concern.