Reinstatement of the ATP high energy paradigm

The paradigm that the hydrolysis of ATP releases high Gibbs energy able to perform work has increasingly been questioned over the last two decades. Results from theoretical and experimental studies have been interpreted to indicate that the synthesis of ATP from ADP and P_i does not require energy supply and that binding of ATP per se can transmit utilizable energy to an enzyme. As has recently been concluded, all this has led to a change of the ATP high energy paradigm in bioenergetics. Starting from this challenge, the present review singles out the striking sources of the apparent dichotomy in biocnergetics, and endeavours to eliminate the apparent contradictions by the application of the prior knowledge on both the participation of the enzyme protein in energy exchange processes and the particular reactivities of phosphorus that make it an outstanding element for functionally variable work assignments in enzymatic systems.     

The Relationship Between Protein Synthesis,ATP and Adenylate Energy Charge in Isolated Mung Bean Axes during Imbibition

The increase in ATP and E.C. in the mung bean axes during imbibi- tion was accompanied by an increase in the rate of protein synthesis. When the axes were treated with 5×l0-5 M, and 5×10-4M 2,4-Dinitrophenol at the first 4 hours of imbibition respectively, the production of ATP was inhibited, and the E.C. value decreased; at the same time, the incorporation of 3H-leucine into the trichloroacetic acidinsoluble protein was inhibited also. CCCP (1×10-5M and 1×10-4M) had a similar effect as DNP on mung bean axes. Incubated with 0.2 μg. ml-1 cycloheximide for 4 hours, the protein synthsized reduced by 69% compared to the control, the ATP and E. C. were slightly higher than the untreated one; while incubated with 1 μg and 5 μg cycloheximide, the protein synthesis almost stopped, the content of ATP decreased slightly, and E. C. value remained constant. When the mung bean axes were incubated with 1 μg, and 10 μg. ml-1 of actinomycin D for 4 hours, the protein synthesis was inhibited 23%, and 48% respectively. On the other hand, ATP, E. C. and the adenylate pool were not affected. These results showed that protein synthesis in mung bean axes during im- bibition was highly sensitive to the changes of ATP level and E. C. value. In contrast, adenylate pool was not affected by the actinomycin D.     

离体绿豆胚轴在吸胀过程中蛋白质合成与ATP水平及能荷值的关系

绿豆胚轴吸胀过程中 ATP 水平及能荷(E.C.)值的上升伴随着蛋白质合成速率的增加。用5×10~(-5)M 和5×10~(-4)DNP 处理后,组织中 ATP 水平及能荷值降低,同时也抑制了~3H-亮氨酸参入 TCA 不溶性蛋白质的量。并观察到 CCCP(1×10~(-3)M 和1×10~(-4)M)有类似作用。以0.2μg/ml 亚胺环己酮处理,蛋白质合成下降69%,ATP 和 E.C.都略有增加;用1μg/ml 和5μg/ml 处理,蛋白质合成接近停止(占总合成量的6—7%),ATP 水平稍有下降,E.C.值仍保持不变。用每毫升含1μg 和10μg 放线菌素 D 处理,使蛋白质合成分别降低23%和48%,而 ATP 水平及 E.C.值不受任何影响。这些结果表明绿豆胚轴吸胀初期,其蛋白质合成受 ATP 水平及能荷值的调节,而腺苷酸库和能荷变化都不受放线菌素 D 的影响。     

An informational framework to predict reaction of constraints using a reciprocally connected knee model

Researchers have used screw theory to describe the motion of the knee in terms of instantaneous axes of the knee (IAK). However, how geometric change to the dynamic alignment of IAK may affect stance phase of foot loading has not yet been fully explained. We have tested our informational framework through readily accessible benchmark data (Fregly et al. 2012): muscle contraction and ground reaction force are compounded into a wrench that is reciprocal to the IAK and resolved into component wrenches belonging to the reciprocal screw system. This revealed the special screw system that defines the freedom available to the knee and more precisely revealed how to measure this first order of freedom. After this step, we determined the reciprocal screw system, which involves the theory of equilibrium. Hence, a screw system of the first order will have a screw system of the fifth order as its reciprocal. We established a framework the estimation of reaction of constraints about the knee using a process that is simplified by the judicious generation of IAK for the first order of freedom in equilibrium.     

(ADP-ribose) polymerase 1 and AMP-activated protein kinase mediate progressive dopaminergic neuronal degeneration in a mouse model of Parkinson's disease

Genetic and epidemiologic evidence suggests that cellular energy homeostasis is critically associated with Parkinson''s disease (PD) pathogenesis. Here we demonstrated that genetic deletion of Poly (ADP-ribose) polymerase 1 completely blocked 6-hydroxydopamine-induced dopaminergic neurodegeneration and related PD-like symptoms. Hyperactivation of PARP-1 depleted ATP pools in dopaminergic (DA) neurons, thereby activating AMP-activated protein kinase (AMPK). Further, blockade of AMPK activation by viral infection with dominant-negative AMPK strongly inhibited DA neuronal atrophy with moderate suppression of nuclear translocation of apoptosis-inhibiting factor (AIF), whereas overactivation of AMPK conversely strengthened the 6-OHDA-induced DA neuronal degeneration. Collectively, these results suggest that manipulation of PARP-1 and AMPK signaling is an effective therapeutic approach to prevent PD-related DA neurodegeneration.     

Acute bioenergetic insulin sensitivity of skeletal muscle cells: ATP-demand-provoked glycolysis contributes to stimulation of ATP supply

Skeletal muscle takes up glucose in an insulin-sensitive manner and is thus important for the maintenance of blood glucose homeostasis. Insulin resistance during development of type 2 diabetes is associated with decreased ATP synthesis, but the causality of this association is controversial. In this paper, we report real-time oxygen uptake and medium acidification data that we use to quantify acute insulin effects on intracellular ATP supply and ATP demand in rat and human skeletal muscle cells. We demonstrate that insulin increases overall cellular ATP supply by stimulating the rate of glycolytic ATP synthesis. Stimulation is immediate and achieved directly by increased glycolytic capacity, and indirectly by elevated ATP demand from protein synthesis. Raised glycolytic capacity does not result from augmented glucose uptake. Notably, insulin-sensitive glucose uptake is increased synergistically by nitrite. While nitrite has a similar stimulatory effect on glycolytic ATP supply as insulin, it does not amplify insulin stimulation. These data highlight the multifarious nature of acute bioenergetic insulin sensitivity of skeletal muscle cells, and are thus important for the interpretation of changes in energy metabolism that are seen in insulin-resistant muscle.     

Polymorphisms of metal transporter genes DMT1 and ATP7A in Wilson's disease

Wilson's disease (WND) is an inherited disorder of copper metabolism. Divalent metal transporter1 (DMT1) and ATP7A play important roles in metal transport in humans. The frequency of two single nucleotide polymorphisms of the DMT1 gene: DMT1 IVS4 C>A, DMT1 11245 T>C and two of the ATP7A gene: rs1062472 T>C, ATP7A rs 2227291 G>C have been evaluated in a population of 108 Wilson's disease patients and 108 sex- and age-matched healthy volunteers. The DMT1 IVS4 C(+) allele occurred more frequently in WND than in the healthy controls. The allele frequencies of other studied polymorphisms in WND group were in line with frequencies obtained for healthy volunteers. Neither of the polymorphisms had an impact on the age at onset or clinical phenotype of WND.     

Chemical tools to explore nutrient-driven O-GlcNAc cycling

Abstract

Posttranslational modifications (PTM) including glycosylation, phosphorylation, acetylation, methylation and ubiquitination dynamically alter the proteome. The evolutionarily conserved enzymes O-linked N-acetylglucosamine (O-GlcNAc) transferase (OGT) and O-GlcNAcase are responsible for the addition and removal, respectively, of the nutrient-sensitive PTM of protein serine and threonine residues with O-GlcNAc. Indeed, the O-GlcNAc modification acts at every step in the “central dogma” of molecular biology and alters signaling pathways leading to amplified or blunted biological responses. The cellular roles of OGT and the dynamic PTM O-GlcNAc have been clarified with recently developed chemical tools including high-throughput assays, structural and mechanistic studies and potent enzyme inhibitors. These evolving chemical tools complement genetic and biochemical approaches for exposing the underlying biological information conferred by O-GlcNAc cycling.     

Phase response and entrainment: Model computations on their relation using Wever's oscillator model

Abstract

Enright's theory, which explains entrainment as periodically repeated phase response, is applied to Wever's self‐sustained oscillation model of are circadian rhythm and tested by computer simulation. Ranges of phase response and entrainment are compared and the oscillatory behaviour is shown in the phase diagram for the cases of phase response and entrainment. It is shown that Enright's theory is not valid for self‐sustained oscillations in general, but it need not necessarily fail in case of the biological circadian rhythm.     

ATP synthesis and storage

Since 1929, when it was discovered that ATP is a substrate for muscle contraction, the knowledge about this purine nucleotide has been greatly expanded. Many aspects of cell metabolism revolve around ATP production and consumption. It is important to understand the concepts of glucose and oxygen consumption in aerobic and anaerobic life and to link bioenergetics with the vast amount of reactions occurring within cells. ATP is universally seen as the energy exchange factor that connects anabolism and catabolism but also fuels processes such as motile contraction, phosphorylations, and active transport. It is also a signalling molecule in the purinergic signalling mechanisms. In this review, we will discuss all the main mechanisms of ATP production linked to ADP phosphorylation as well the regulation of these mechanisms during stress conditions and in connection with calcium signalling events. Recent advances regarding ATP storage and its special significance for purinergic signalling will also be reviewed.     

Surface elastic modulus of barnacle adhesive and release characteristics from silicone surfaces

The properties of barnacle adhesive on silicone surfaces were studied by AFM indentation, imaging, and other tests and compared to the barnacle shear adhesion strength. A multilayered structure of barnacle adhesive plaque is proposed based on layered modulus regions measured by AFM indentation. The fracture of barnacles from PDMS surfaces was found to include both interfacial and cohesive failure of barnacle adhesive plaque, as determined by protein staining of the substratum after forced barnacle release from the substrate. Data for freshly released barnacles showed that there was a strong correlation between the mean Young's modulus of the outermost (softest) adhesive layer (E< 0.3 MPa) and the shear strength of adhesion, but no correlation for other higher modulus regions. Linear, quadratic, and Griffith's failure criterion (based on rough estimate of crack length) regressions were used in the fit, and showed significance.     

High‐energy compounds promote physiological processing of Alzheimer's amyloid‐β precursor protein and boost cell survival in culture

Physiological or α‐processing of amyloid‐β precursor protein (APP) prevents the formation of Aβ, which is deposited in the aging brain and may contribute to Alzheimer's disease. As such, drugs promoting this pathway could be useful for prevention of the disease. Along this line, we searched through a number of substances and unexpectedly found that a group of high‐energy compounds (HECs), namely ATP, phosphocreatine, and acetyl coenzyme A, potently increased APP α‐processing in cultured SH‐SY5Y cells, whereas their cognate counterparts, i.e., ADP, creatine, or coenzyme A did not show the same effects. Other HECs such as GTP, CTP, phosphoenol pyruvate, and S‐adenosylmethionine also promoted APP α‐processing with varying potencies and the effects were abolished by energy inhibitors rotenone or NaN₃. The overall efficacy of the HECs in the process ranged from three‐ to four‐fold, which was significantly greater than that exhibited by other physiological stimulators such as glutamate and nicotine. This suggested that the HECs were perhaps the most efficient physiological stimulators for APP α‐processing. Moreover, the HECs largely offset the inefficient APP α‐processing in aged human fibroblasts or in cells impaired by rotenone or H₂O₂. Most importantly, some HECs markedly boosted the survival rate of SH‐SY5Y cells in the death process induced by energy suppression or oxidative stress. These findings suggest a new, energy‐dependent regulatory mechanism for the putative α‐secretase and thus will help substantially in its identification. At the same time, the study raises the possibility that the HECs may be useful to energize and strengthen the aging brain cells to slow down the progression of Alzheimer's disease.     

A novel ATP7B gene mutation in a liver failure patient with normal ceruloplasmin and low serum alkaline phosphatase

Wilson's disease (WD) is a rare disorder of copper metabolism resulting in accumulation of copper in liver and other organs. We present a liver failure patient, who was misdiagnosed for two years, with normal ceruloplasmin and low serum alkaline phosphatase. Molecular testing revealed a novel p.Ala982Thr mutation within ATP7B gene. The pathology of liver sample showed a large amount of copper deposition in the hepatocytes and confirmed the diagnosis of WD. Our data highlighted the importance of molecular testing in the early diagnosis of atypical WD.     

Copper subtype of Alzheimer's disease (AD): Meta-analyses,genetic studies and predictive value of non-ceruloplasmim copper in mild cognitive impairment conversion to full AD

Alzheimer's disease (AD) is the most common form of dementia. A myriad of complex factors contribute to AD, promoting the deposition in plaques of amyloid-beta (Aβ), which is the main constituent of this pathognomonic sign of AD at autopsy brain inspection. Aβ toxicity is related to oxidative stress, which results in synaptic loss in specific brain areas, eventually leading to cognitive decline. Metal, and especially copper, dyshomeostasis is a key factor in these processes. Recent studies have demonstrated that the serum fraction of copper that is not bound to ceruloplasmin (Non-Cp copper, also known as ‘free’ or labile copper) increases in a percentage of AD patients and mild cognitive impairment (MCI) subjects; this is considered a precursor of AD. Non-Cp copper is the exchangeable fraction of low molecular weight copper in serum. It is distinguished from the copper structurally bound to the ceruloplasmin protein, a master protein of iron metabolism. Non-Cp copper levels are higher than normal reference values (range 0–1.6 μmol/L) in about 50% of amnestic MCI subjects and 60% of AD patients, typifying them in a subset of AD. Meta-analyses, genetic studies and a prognostic study evaluating the predictive value of Non-Cp copper in MCI conversion to full AD demonstrate the existence of this copper phenotype of AD.     

Developmental variation in ecogeographic body proportions

While ecogeographic variation in adult human body proportions has been extensively explored, relatively less attention has been paid to the effect of Bergmann's and Allen's rules on human body shape during growth. The relationship between climate and immature body form is particularly important, as immature mortality is high, mechanisms of thermoregulation differ between young and mature humans, and immature body proportions fluctuate due to basic parameters of growth. This study explores changes in immature ecogeographic body proportions via analyses of anthropometric data from children included in Eveleth and Tanner's (1976) Worldwide Variation in Human Growth, as well as limb proportion measurements in eight different skeletal samples. Moderate to strong correlations exist between climatic data and immature stature, weight, BMI, and bi-iliac breadth; these relationships are as strong, if not stronger, in immature individuals as they are in adults. Correlations between climate and trunk height relative to stature are weak or nonexistent. Altitude also has significant effects on immature body form, with children from higher altitudes displaying smaller statures and lower body weights. Brachial and crural indices remain constant over the course of growth and display consistent, moderate correlations with latitude across ontogeny that are just as high as those detected in adults. The results of this study suggest that while some features of immature body form, such as bi-iliac breadth and intralimb indices, are strongly dictated by ecogeographic principles, other characteristics of immature body proportions are influenced by intrinsic and extrinsic factors such as nutrition and basic constraints of growth.