金属离子及保护剂对深绿木霉T155产芥子酶的活性影响及芥子酶的分离纯化

【目的】探求金属离子及保护剂对深绿木霉T155产生的粗芥子酶液活性的影响以及芥子酶的分离纯化方法。【方法】通过添加不同浓度的金属离子及保护剂研究对芥子酶活性的影响并通过细胞破壁、硫酸铵沉淀、透析、Sephadex G-100柱层析、DEAE-52离子交换层析、Sephadex G-200柱层析等方法提取到纯的芥子酶,最后通过电泳检测芥子酶的纯度和分子量。【结果】研究发现Ag+、Zn2+、Pb2+、Mg2+、Hg2+、Fe3+等金属离子在低浓度时对芥子酶均表现为一定的促进作用,但达到一定浓度后则起抑制作用,Ca2+浓度在0.069–17.000 g/L范围内均对酶活性起到促进作用,且促进效果基本与Ca2+浓度成正比;添加1 mmol/L EDTA和3 mmol/L DTT对芥子酶的保护作用最好,4°C保存26 d后芥子酶能够保持85%活性;电泳分析该芥子酶的分子量大约在150 kD左右,并且是一个二聚体。【结论】Ca2+在实验浓度内主要是提高芥子酶活性,而其他金属离子对芥子酶活性主要起抑制作用;EDTA或者EDTA与DTT协同能够较好保持芥子酶活性的稳定性;通过一系列分离纯化步骤得到了纯的二聚体芥子酶,研究结果为挖掘产芥子酶的微生物资源提供了新的途径和思路。     

毕赤酵母木糖还原酶定点突变改善其对双辅酶的亲和力

通过毕赤酵母(Pichia stipitis)木糖还原酶(xylose reductase, XR)基因定点突变,获得NADH高亲和力的毕赤酵母木糖还原酶(PsXR),改善了辅酶不同而导致的酿酒酵母胞内氧化还原失衡.同时克隆了PsXR编码基因,通过BLAST工具进行同源性搜索,并用生物软件进行序列比对和结构分析,确定突变位点.用融合PCR方法进行定点突变,并在大肠杆菌表达系统中进行融合表达,且对表达产物进行HIS-TAG亲和纯化,分光光度法检测酶活性,计算比活力.本研究成功获得突变XR编码基因,并收集了纯化的突变蛋白.酶活性检测和比活力计算显示,3种突变酶对2种辅酶的亲和力在一定程度上都发生了变化.与未突变的PsXR相比,3种突变酶对辅酶NADPH的亲和力均显著下降,突变酶M3对辅酶NADH的亲和力未发生变化,而突变酶M1和M4对辅酶NADH的亲和力显著升高,其中突变酶M1对NADH的亲和力明显提高,对NADPH的亲和力明显下降,其活性主要依赖辅酶NADH,提示K270R位点在XR与辅酶结合中起关键作用.     

细菌脱色酶TpmD的酶学特性研究

从嗜水气单胞菌DN322中分离纯化出能够对三苯基甲烷类染料结晶紫、碱性品红、灿烂绿及孔雀绿进行高效脱色的脱色酶,命名为TpmD。在测定TpmD分子量、等电点及对不同三苯基甲烷染料脱色的动力学参数、脱色过程对分子氧及NADH/NADPH具有依赖性的基础上,又进一步从黄素FAD/FMN对酶活力的影响、酶抑制剂、酶蛋白N-末端测序及酶溶液的特征吸收光谱等方面对TpmD的酶学本质进行了分析。结果表明,TpmD不含核黄素,其脱色活性也不因加入FAD或FMN而提高。TpmD的N-末端氨基酸序列与多种氧化还原酶具有同源性。甲吡酮及维生素C(Vc)对TpmD的脱色活性具有明显的抑制作用。TpmD酶蛋白的溶液在408nm处有一特征吸收峰,但在连二亚硫酸钠的还原条件下通入CO气体后,该酶却不具有P450酶在450nm处的特征吸收峰。上述结果显示脱色酶TpmD是一种新的氧化酶。     

灰盖鬼伞过氧化物酶功能表达及部分酶学特性

摘要:【目的】旨在用毕赤酵母高效表达灰盖鬼伞过氧化物酶。【方法】借助DNAworks 3.1软件设计、优化引物,用自己构建的基因合成、定点突变平台合成了毕赤酵母密码子偏好性的灰盖鬼伞过氧化物酶基因,测序后构建在表达载体pPICZαA上,整合于巴斯德毕赤酵母GS115染色体,来自酿酒酵母的α因子作为信号肽序列指导重组蛋白的分泌表达。从82个PCR检测为阳性的酵母转化子中筛选出6株高Zeocin抗性的菌进行表达,选表达酶活性最高的作为实验菌株命名为CIP/GS115。【结果】以ABTS为底物时,CIP/GS115 在甲醇诱导第4天酶活最高达到487.5 U/mL,是目前摇瓶培养诱导表达灰盖鬼伞过氧化物酶活性最高报道。纯化后的酶最适反应温度为25℃,45℃酶反应速度是最适温度时的61.5%,在低于40℃时比较稳定,超过45℃稳定性迅速下降。最适反应pH 为5.0,在pH 4.5－6.5之间比较稳定。以不同的底物研究纯酶底物特异性发现最适底物的顺序是:ABTS ＞ 愈创木酚＞ 2,6-二甲氧苯酚＞ 2,4-二氯苯酚＞ 苯酚。【结论】灰盖鬼伞过氧化物酶在毕赤酵母中的高效分泌表达和高的特殊活性为该酶在废水处理、染料脱色等方面的工业化应用奠定了一定基础。     

疏棉状嗜热丝孢菌脂肪酶在毕赤酵母中的表面展示及酶学性质

【目的】构建疏棉状嗜热丝孢菌脂肪酶(Thermomyces lanuginosus lipase,TLL)在毕赤酵母GS115中的细胞表面展示体系,筛选展示成功且酶活力及展示率较高的重组子作为全细胞催化剂,并研究其酶学性质。【方法】克隆TLL基因tll,以酿酒酵母细胞壁蛋白Sed1p为锚定蛋白,构建表面展示载体pPICZαA-TLS。重组载体经SacⅠ线性化后转入毕赤酵母GS115中,经三丁酸甘油酯平板检测及摇甁发酵筛选获得高酶活力的毕赤酵母重组子,采用抗FLAG标签一抗和R-PE荧光素标记的二抗处理细胞后,进行荧光显微镜检测和流式细胞仪分析,并考察全细胞催化剂的最适反应温度和pH、金属离子耐受性等酶学性质。【结果】成功构建TLL毕赤酵母细胞表面展示体系,筛选到1株具有三丁酸甘油酯和橄榄油水解活力的克隆子,经1%的甲醇诱导发酵120 h后,水解橄榄油酶活力达257.8 U/g干细胞。经抗体处理后的重组菌发酵细胞在荧光显微镜下呈现强烈的红色荧光,流式细胞仪分析结果也证实脂肪酶被成功展示在酵母细胞表面,展示率达98.36%。展示的TLL作为全细胞催化剂水解对硝基苯酚丁酸酯(pNPB)的最适温度为30℃,最适pH为8.0,且具备良好的热稳定性和有机溶剂耐受性;K+、Ca2+、Mg2+对其有微弱的激活作用,Mn2+、Ni2+则有微弱的抑制作用,Cu2+的抑制作用较强,而EDTA、SDS、Tween 20对酶活力影响不明显。【结论】首次将TLL脂肪酶成功展示在毕赤酵母细胞表面,获得具有较高水解活力和良好酶学特性的全细胞催化剂,为表面展示TLL脂肪酶的规模化应用奠定了技术基础。     

细菌脱色酶TpmD对三苯基甲烷类染料脱色的酶学特性研究

从嗜水气单胞菌DN322中分离纯化出能够对三苯基甲烷类染料结晶紫、碱性品红、灿烂绿及孔雀绿进行有效脱色的脱色酶,命名为TpmD。该酶的亚基分子量为29.4kDa,等电点为5.6。该酶催化上述4种三苯基甲烷类染料脱色反应的适合温度为40~60℃,适合pH范围为5.5~9.0。动力学参数测定结果显示TpmD对结晶紫、碱性品红、灿烂绿及孔雀绿的Km值分别为24.3、40.65、4.2、68.5μmol-1.L-1,Vmax值分别为19.6、74.1、82.8、115.6μmol.L-1.s-1。结晶紫为该酶的最适反应底物。TpmD催化的脱色反应依懒于NADH/NADPH及分子氧的存在,显示该酶属于NADH/NADPH依赖型的氧化酶类。这是国内外首次关于细菌中三苯基甲烷类染料脱色酶酶学性质的描述。     

烟曲霉脯氨酰内肽酶在巴斯德毕赤酵母中的分泌表达与重组酶性质

【目的】研究烟曲霉脯氨酰内肽酶cDNA基因的异源表达及重组酶性质。【方法】以烟曲霉CICIM F0044总RNA为模板,反转录合成cDNA;再以cDNA为模板,通过PCR扩增去除自身信号肽的脯氨酰内肽酶基因,构建表达载体pPIC9K-PEP;电转化酵母宿主菌Pichia pastoris GS115,获得重组菌PEP-09;纯化并分析重组酶性质。【结果】重组菌摇瓶发酵酶活力最高可达647.3 U/L。表达产物纯化后的分子量为63 kD左右。重组酶最适反应温度为65°C,有较好的温度稳定性,在55°C保温8 h能保留90%以上的酶活力。该酶最适pH为5.5,在pH 3.0 9.0范围内有很好稳定性,在pH 6.0 8.0的缓冲液中37°C保温10 d酶活没有明显变化。【结论】烟曲霉脯氨酰内肽酶cDNA基因在巴斯德毕赤酵母中实现了分泌表达,重组酶活性稳定,有一定的应用潜力。     

特异腐质霉内切葡聚糖酶Ⅱ基因在毕赤酵母中的表达及酶学性质

【目的】在毕赤酵母中表达特异腐质霉Humicola insolens的中性内切葡聚糖酶Ⅱ,并对其性质加以研究。【方法】利用RT-PCR的方法,以特异腐质霉(Humicola insolens)NC3总RNA为模板,克隆到中性内切葡聚糖酶Ⅱ基因(egⅡ)的cDNA。将其插入表达载体pPIC9K,重组质粒经线性化后电击转化毕赤酵母(Pichia pastoris)菌株GS115。【结果】SDS-PAGE和酶活的检测结果均表明:egⅡ基因在毕赤酵母中成功表达。重组酶的部分酶学性质研究表明,该酶的最适反应温度为70°C,且在65°C以下具有较好的热稳定性。最适反应pH为6.5,在pH 6.0?7.0之间有较好的稳定性。【结论】用重组毕赤酵母可高效表达外源中性内切葡聚糖酶,为其今后在工业应用奠定了基础。     

酵母表面展示分选酶底物用于分选酶活性检测

摘要：【目的】以EGFP标签检测分选酶底物QALPETGEE在毕赤酵母表面的表达,然后将酵母表面展示的底物与分选酶相互作用以检测分选酶活性。【方法】以pcDNA-myc-his-EGFP为模板,通过PCR技术将QALPETGEE-linker-EGFP基因连接到穿梭载体pKFS上,构建QALPETGEE-linker-EGFP酵母表面展示载体后转化至毕赤酵母（Pichia pastoris）GS115中。重组菌经培养,利用荧光显微镜检测重组酵母的荧光强度,然后通过荧光分光光度计检测分选酶与底物相互作用后产     

聚苹果酸聚合途径中苹果酰辅酶A连接酶基因的克隆、表达及酶学性质

【目的】研究出芽短梗霉聚苹果酸聚合途径中苹果酰辅酶A连接酶基因及其酶学特性。【方法】通过设计兼并引物,采用IPCR技术从出芽短梗霉CCTCC M2012223的基因组中扩增得到苹果酰辅酶A连接酶基因的cDNA全长序列,构建表达载体,通过大肠杆菌异源表达,Ni-NTA柱层析纯化酶蛋白,分析其酶学特性。【结果】获得苹果酰辅酶A连接酶基因序列全长为1498 bp,编码440 aa,含有4个外显子和3个内含子。该重组酶最适反应温度为25℃,最适反应pH值为8.0,高浓度底物ATP明显对酶活性具有抑制作用,单体选择性表明对底物草酸、草酰乙酸、丁酸、丙二酸也具有很好催化活性。【结论】成功从出芽短梗霉CCTCC M2012223中克隆获得聚苹果酸聚合途径的苹果酰辅酶A连接酶基因,为聚苹果酸聚合途径解析及新型可降解材料创制奠定基础。     

Dye decolorization by sub-tropical basidiomycetous fungi and the effect of metals on decolorizing ability

White-rot basidiomycetous fungi from sub-tropical forests plus a Phanerochaete chrysosporium control were able to decolorize several azo, triphenylmethane and heterocyclic/polymeric dyes over 14 days. The effects of metal ions on decolorizing ability towards the dye Poly-R varied. Two sub-tropical strains were capable of decolorization in the presence of up to 0.25 mM Cd²⁺, Cu²⁺ and Zn²⁺, whereas decolorization by P. chrysosporium was completely inhibited by all metals at concentrations as low as 0.1 mM. In all cases decolorizing ability was more sensitive than biomass production to metal inhibition.     

Mutational analysis of NADH-binding residues in triphenylmethane reductase from Citrobacter sp. strain KCTC 18061P

Triphenylmethane reductase (TMR) catalyzes the NADH-dependent reduction of triphenylmethane dyes. Sequence alignment revealed a region with a conserved GXXGXXG motif near its N-terminus, which corresponds to a conserved structural motif of known dinucleotide-binding proteins. To verify whether some of these glycine residues are important for the enzyme catalysis, these three glycine residues (Gly-7, Gly-10 and Gly-13) were individually replaced by alanine using site-directed mutagenesis. The secondary structures of these mutants, as measured by circular dichroism spectroscopy, did not show remarkable differences as compared with the wild type. The V(max)/K(m) values of mutants G7A and G13A for both Basic fuchsin and NADH were increased about three and twofold over that of the wild type, respectively, whereas the V(max)/K(m) value of mutant G10A were decreased about sixfold. These results suggest that these three glycine residues are involved in the interaction with both substrate and cofactor for the catalytic activity of TMR.     

胶红酵母JB401降解脱色三苯甲烷类染料

从烟梗中分离筛选得到1株能够对三苯甲烷类染料高效脱色的微生物,经ITS-5.8S rDNA分析鉴定为胶红酵母,命名为Rhodotorula mucilaginosa JB401。全波长扫描实验结果证实染料的脱色由胶红酵母降解结晶紫引起。为了提高R.mucilaginosa JB401脱色结晶紫的能力,通过单因素试验对R.mucilaginosa JB401的培养条件进行了优化,得出菌体生长24 h后以2%接种量接入初始pH为5的脱色培养基并在37℃摇床培养,可以取得最优脱色效果,此时脱色50、100和200 mg/L的结晶紫达到90%去除率分别需要3、6和14 h。此外,胶红酵母对温度和pH良好的适应性使其具有应用于工业废水处理的潜力。     

Biotreatment of Simulated Textile Dye Effluent Containing malachite green by an Up-Flow Immobilized Cell Bioreactor

An up-flow immobilized cell bioreactor was developed using a microbial consortium, consisting of Bacillus sp., Alcaligenes sp. and Aeromonas sp., immobilized on refractory brick pieces as immobilization support. malachite green, a model triphenylmethane dye was decolourized by more than 93% within 48 h (operating conditions: initial dye concentration 30 mg l⁻¹; flow rate 6 ml h⁻¹). The analytical studies based on TLC and ¹H NMR showed degradation of the aromatic rings of the malachite green into simpler metabolic intermediates.     

基于PCR技术的miRNA定量检测方法

microRNA(miRNA)是一类广泛存在于真核生物中,不编码蛋白质的短序列RNA,它广泛参与真核生物的生长发育、新陈代谢和应激反应等生命活动。但绝大多数miRNA的生物学功能还不清楚,通过灵敏的定量检测方法,了解miRNA在不同组织部位的时空表达,是探究其功能的重要环节。现着重介绍了2类7种基于PCR技术的miRNA定量检测方法的基本原理和实验流程,并分析了这些定量检测技术间的异同和适用范围。     

Quirks of dye nomenclature. 5. Rhodamines

Rhodamines were first produced in the late 19^th century, when they constituted a new class of synthetic dyes. These compounds since have been used to color many things including cosmetics, inks, textiles, and in some countries, food products. Certain rhodamine dyes also have been used to stain biological specimens and currently are widely used as fluorescent probes for mitochondria in living cells. The early history and current biological applications are sketched briefly and an account of the ambiguities, complications and confusions concerning dye identification and nomenclature are discussed.     

Interpretation and Optimization of Absorbance and Fluorescence Signals from Voltage-sensitive Dyes

Voltage-sensitive dyes produce absorbance and fluorescence changes that can be used to image voltage. The present study develops a systematic approach to the optimization of these signals. A mathematical analysis assesses the dye optical density (OD) that optimizes the signal-to-noise ratio in absorbance and fluorescence measurements. The signal-to-noise ratio is maximal for a dye OD of 2 (natural logarithm) in absorbance and ~1 in fluorescence. The fluorescence result is approximate because, in contrast to absorbance, the optimal dye OD varies with the amount of scattering and intrinsic absorbance of the tissue. The signal-to-noise ratio of absorbance is higher in thick preparations such as brain slices; fluorescence is superior in thin preparations such as cell culture. The optimal OD for absorbance and fluorescence, as well as the superiority of absorbance, were confirmed experimentally on hippocampal slices. This analysis also provided insight into the interpretation of signals normalized to resting light intensities. With both absorbance and fluorescence, the normalized signal (I/I) varies with OD, and does not reflect the change in dye absorbance. In absorbance this problem is remedied by dividing I/I by the dye OD to obtain the absorbance change. For fluorescence a correction is possible, but is more complicated. Because this analysis indicates that high levels of stain optimize the signal-to-noise, dyes were tested for pharmacological actions and phototoxicity. The absorbance dye RH155 was found to have pharmacological action at high staining levels. The fluorescent dye RH414 was phototoxic. Adverse effects could not be detected with the absorbance dye RH482.     

Dye Affinity Labelling of Yeast Alcohol Dehydrogenase

Abstract

The interaction of yeast alcohol dehydrogenase (ADH) with the reactive chlorotriazine dye Vilmafix Blue A-R (VBAR) was studied. VBAR was purified to homogeneity on lipophilic Sephadex LH-20 and characterised by reverse phase HPLC and analytical TLC. Incubation of ADH with purified VBAR at pH 8.0 and 37°C resulted in a time-dependent inactivation of the enzyme. The observed rate of enzyme inactivation (k_obs) exhibited a non-linear dependence on VBAR concentration from 22 to 106nmol, with a maximum rate of inactivation (k₃) of 0.134min^?1 and k_D of 141.7 μM. The inhibition was irreversible and activity could not be recovered by gel-filtration chromatography. The inactivation of ADH by VBAR was competitively inhibited by the nucleotides NADH and NAD⁺. These results suggest that VBAR acts as an affinity label at the nucleotide binding site of yeast ADH.     

Comparative effects of cationic triarylmethane, phenoxazine and phenothiazine dyes on horse serum butyrylcholinesterase

The kinetic effects of a selection of triarylmethane, phenoxazine and phenothiazine dyes (pararosaniline (PR), malachite green (MG), methyl green (MeG); meldola blue (MB), nile blue (NB), nile red (NR); methylene blue (MethB)) and of ethopropazine on horse serum butyrylcholinesterase were studied spectrophotometrically at 25 ^°C in 50 mM MOPS buffer, pH 8, using butyrylthiocholine as substrate. PR, MeG, MB and ethopropazine acted as linear mixed type inhibitors of the enzyme, with respective K_i values of 4.5 ± 0.50 μM, 0.41 ± 0.007 μM, 0.44 ± 0.086 μM and 0.050 ± 0.0074 μM. MG, NB, MethB and NR caused complex, nonlinear inhibition pointing to cooperative binding at two sites. Intrinsic K′ values (≡[I]²_0.5 extrapolated to [S]=0) for MG, NB, NR and MethB were 0.20 ± 0.096 μM, 0.0018 ± 0.0015 μM, 0.92 ± 0.23 μM and 0.23 ± 0.08 μM. NB stood out as a potent inhibitor effective at nM levels. Comparison of inhibitory effects on horse and human serum butyrylcholinesterases suggested that the two enzymes must have distinct microstructural features.     

Synthesis of some novel dimethine,bis-dimethine cyanine dyes and octacosamethine cyanine dyes endowed with promising biological potency against (HepG2), (Hela), (MCF-7), (MIA), (SN12C) and (H358) cell lines

Successfully, one step two component synthesis of dimethine cyanine dyes, bis-dimethine cyanine dyes and icosamethine cyanine dyes 2–10via reaction of pyridinium salt 1 with some different aldehydes hope to obtain these compounds with enhanced biological potency as antitumor agents against spontaneous liver (HepG2), cervical (Hela), breast (MCF-7), pancreas (MIA), kidney (SN12C) and lung (H358). The impact of substituted drugs on the tumor cells was reflected by means of structure activity relationship (SAR). Among these dyes, icosamethine cyanine dye 8 recorded an excellent activity toward all the tested cell lines. The newly destined drugs were identified and emphasized by spectroscopy and elemental analyses.