Computational fluid dynamics in the oral cavity of ram suspension-feeding fishes

We have modeled steady, three-dimensional flow with a no-slip boundary condition in cylindrical and conical oral cavities possessing vertical or slanted branchial slits. These numerical simulations illustrate the transport of food particles toward the esophagus, as well as the velocity profiles of water exiting the oral cavity via the branchial slits. The maximum and average velocities are highest for flow exiting the most posterior branchial slit. The highest volume flow rates also occur in the most posterior slit for the cylindrical simulations, but occur in the most anterior slit for the conical simulations. Along the midline, there is a pronounced bilaterally symmetrical vortex in the posterodorsal region of the cylindrical and conical oral cavities and a second bilaterally symmetrical vortex in the posteroventral region of the cylinder. Particles entrained in the vortices will recirculate in the posterior oral cavity, increasing the probability of encounter with sticky, mucus-covered surfaces such as the oral roof, gill arches, or gill rakers. The posterodorsal vortex could serve to concentrate particles near the entrances of the epibranchial organs. The ventral vortex could be involved in sequestering dense inorganic particles that sink toward the floor of the oral cavity. All vortices are absent in the conical simulation with vertical branchial slits, indicating that the slanted branchial slits between the gill arches are responsible for the formation of the vortex in the conical oral cavity. Experiments using in vivo flow visualization techniques are needed to determine whether ram suspension feeders, pump suspension feeders, and non-suspension-feeding fishes possess vortices in the posterior oral cavity that contribute to particle transport, food particle encounter with sticky surfaces, and inorganic particle rejection.     

Studying the deformation of arachnid slit sensilla by a fracture mechanical approach

Slit sensilla are sensory organs which measure strains in the exoskeleton of arachnids. They occur as isolated slits, in loose groups and in close parallel arrangements known as lyriform organs or compound slit sensilla. The deformations of the slits' faces induced by far-field strains acting on groups of slits are studied using Kachanov's analytical approximations for the opening displacements of cracks, a method developed within the framework of fracture mechanics. The accuracy of the approach is assessed by comparisons with results obtained by finite element analysis. The limits of its applicability to slit sensilla are found to be reached when the lateral spacing between interacting slits is less than half their length, i.e., the method is suitable for studying single slits and loose groups but not lyriform organs. The influence of a number of geometrical parameters of slit sensilla on the deformation patterns of the faces of parallel slits in generic arrangements is studied, viz., spacing between slits, longitudinal shifts between slits, and slit length. The results are presented as opening distances along the length of the cracks and in terms of normalized diagrams that relate the opening distances at mid-length of the slits to the geometrical parameters. In addition, Kachanov's method is used to find a set of slit lengths that give rise to prescribed opening distances.     

Model studies on the mechanical significance of grouping in compound spider slit sensilla (Chelicerata,Araneida)

Summary The mechanical implications of various types of slit arrangements found among the strain-sensitive slit sensilla in the arachnid exoskeleton (Fig. 3) were studied by measuring the deformation of model slits, cut into plastic discs, under static load applied in the plane of the disc and from varying directions (Figs. 1, 2).1. Close parallel, lyriform arrangements. Compression of slits (adequate stimulus) reaches much higher values than dilatation. It is highest with the load direction at right angle to the slit axes. Also, in the majority of slits the range of load angles resulting in compression is considerably larger than that leading to dilatation. Length distribution and lateral shift of slits in the models have a pronounced effect on slit deformability (Figs. 4-5): (a) In the oblique bar arrangement with slits of equal length and regular lateral shift (Fig. 4A) deformation of all slits is very similar at all load directions. In all slits compression results from a range of load angles larger than 120°. (b) In arrangements with a regular increase in slit length and a triangular outline shape deformability differs greatly among the slits at all load angles (Fig. 4B). (c) The slit configuration with a heartshaped outline (Fig. 4C) is peculiar for the large spread of load angles at which the compression of the different slits is highest. — These properties recommend different arrangements for the solution of different strain measuring problems, with for instance, the particular need of a wide angular working range (arrangement a), of a large spectrum of absolute sensitivities (b), or of the analysis of load direction (c).2. Angle and distance between slits. Due to the mechanical directionality inherent in an elongated slit the divergence of slit axes within a group of slits is likely to indicate the importance of the analysis of strain direction (Fig. 6). The mechanical interaction between closely neighbouring slits decreases with their distance from each other. In a parallel arrangement of equally long slits it disappears if the distance is about 1.5 times the slit length (Fig. 7).3. Aiming towards a mechanical model which would explain the complex deformation found in a lyriform organ, we consider the outline of the organ as a hole traversed by beams of material. Slit deformation can be calculated from the elastic lines of the beams which separate the slits and information drawn from photoelastic experiments (Figs. 8-11).     

Electron microscopic study of glomerular filtration barrier in the rat kidney embedded in polymerized glutaraldehyde-urea.

Embedding kidney in polymerized glutaraldehyde-urea favors the retention of glycoprotein matrix of the cell coat and the basement membrane of the glomeruli. The basement membrane appears as a single layer with uniform amorphous matrix. Thick glycoprotein coat covers the whole surface of prodocytes and their foot processes. In areas other than the slits and the portion of the foot processes which touch on the basement membrane, the coat is a continuous layer with an average thickness of 490 A. In the slits between the foot processes of podocytes there is an actual fusion of glycoprotein coats; the average width of the slit is 415 A. The glycoprotein 'plugs' in the slit may be a significant portion of the glomerular filtration barrier against macromolecules, together with the basement membrane and the slit diaphragms.     

Finite element modeling of arachnid slit sensilla: II. Actual lyriform organs and the face deformations of the individual slits

Arachnid slit sensilla respond to minute strains in the exoskeleton. After having applied Finite Element (FE) analysis to simplified arrays of five straight slits (Hößl et al. J Comp Physiol A 193:445–459, 2007) we now present a computational study of the effects of more subtle natural variations in geometry, number and arrangement of slits on the slit face deformations. Our simulations show that even minor variations in these parameters can substantially influence a slit’s directional response. Using white-light interferometric measurements of the surface deformations of a lyriform organ, it is shown that planar FE models are capable of predicting the principal characteristics of the mechanical responses. The magnitudes of the measured and calculated slit face deformations are in good agreement. At threshold, they measure between 1.7 and 43 nm. In a lyriform organ and a closely positioned loose group of slits, the detectable range of loads increases to approximately 3.5 times the range of the lyriform organ alone. Stress concentration factors (up to ca. 29) found in the vicinity of the slits were evaluated from the models. They are mitigated due to local thickening of the exocuticle and the arrangement of the chitinous microfibers that prevents the formation of cracks under physiological loading conditions.     

Ein atlas der spaltsinnesorgane von Cupiennius salei keys. Chelicerata (Araneae)

To facilitate further physiological investigation, a survey was undertaken of all the slit sense organs to be found on the body of the spider Cupiennius salei. We counted and mapped more than 3 000 sensory slits in the cuticle about half of which are combined to small groups of up to 29 slits forming compound or lyriform organs.     

Does body and fin form affect the maneuverability of fish traversing vertical and horizontal slits?

Synopsis The purpose of this study was to determine if body and fin form affected the maneuverability of teleostean fishes as measured by their ability to negotiate simple obstacles. Obstacles were vertical and horizontal rectangular slits of different widths, for which width was defined as the minimum dimension of a slit irrespective of slit orientation. Performance was measured as the smallest slit width traversed. Three species with different body and fin patterns were induced to swim through slits. Species tested were; goldfish Carassius auratus with a fusiform body, anterio-ventral pectoral fins and posterio-ventral pelvic fins; silver dollars Metynnis hypsauchen with the same fin configurations but a gibbose body; angelfish Pterophyllum scalare with a gibbose body and anterio-lateral pectoral fins. Minimum slit widths negotiated were normalized with the length of various body dimensions: total length, maximum width, span at the pectoral fins, and volume^1/3 (numerically equal to mass^1/3). Goldfish had the poorest performance, requiring the largest slit widths relative to these body dimensions. No consistent patterns in performance were found for silver dollars vs. angelfish. There were no differences among species in the ratio of minimum vertical slit width negotiated to that for horizontal slits, indicating fish were equally able to control posture while swimming on their sides. There were also no consistent patterns in the times taken to transit slits. Although the deep-bodied fish were able to maneuver through smaller slits, the most striking result is the similarity of minimum slit widths traversed in spite of the large variation in body form. Body form and fin plan may be more important for maneuvering and posture control during sub-maximum routine activities.     

Predicted performance of single- versus multiple-slit flow systems.

Flow systems utilizing multiple orthogonal excitation slits have been proposed as a means of reducing some types of false alarms in prescreening systems for gynecologic cytology. Such false alarms include those caused by orientation-dependent events, such as passage of binucleate or overlapping cells through the measurement region with both nuclei entering the excitation slit simultaneously. This paper presents distributions of optimal projection angles for randomly oriented nuclei passing through one, two, and three slit excitation regions. The results are used to compute observed nuclear spacing of binucleate cells and to compare performance of one, two, and three slit systems in recognition of binucleate and overlapping cells.     

"Either-or" two-slit interference: stable coherent propagation of individual photons through separate slits

In quantum theory, nothing that is observable, be it physical, chemical, or biological, is separable from the observer. Furthermore, ". all possible knowledge concerning that object is given by its wave function" (Wigner, E. 1967. Symmetries and Reflections. Indiana University Press, Bloomington, IN), which can only describe probabilities of future events. In physical systems, quantum mechanical probabilistic events that are microscopic must, in turn, account for macroscopic events that are associated with a greater degree of certainty. In biological systems, probabilistic statistical mechanical events, such as secretion of microscopic synaptic vesicles, must account for macroscopic postsynaptic potentials; probabilistic single-channel events sum to produce a macroscopic ionic current across a cell membrane; and bleaching of rhodopsin molecules (responsible for quantal potential "bumps") produces a photoreceptor generator potential. Among physical systems, a paradigmatic example of how quantum theory applies to the observation of events concerns the interactions of particles (e.g., photons, electrons) with the two-slit apparatus to generate an interference pattern from a single common light source. For two-slit systems that use two independent laser sources with brief (<1 ms) intervals of mutual coherence (Paul, H. 1986. Rev. Modern Phys. 58:209-231), each photon has been considered to arise from both beams and has a probability amplitude to pass through each of the two slits. Here, a single laser source two-slit interference system was constructed so that each photon has a probability amplitude to pass through only one or the other, but not both slits. Furthermore, all photons passing through one slit could be distinguished from all photons passing through the other slit before their passage. This "either-or" system produced a stable interference pattern indistinguishable from the interference produced when both slits were accessible to each photon. Because this system excludes the interaction of one photon with both slits, phase correlation of photon movements derives from the "entanglement" of all photon wave functions due to their dependence on a common laser source. Because a laser source (as well as Young's original point source) will have stable time-averaged spatial coherence even at low intensities, the "either-or" two-slit interference can result from distinct individual photons passing one at a time through one or the other slit-rather than wave-like behavior of individual photons. In this manner, single, successive photons passing through separate slits will assemble over time in phase-correlated wave distributions that converge in regions of low and high probability.     

Atomistic Monte Carlo Simulations of Liquids of Chain Molecules Confined by Solid Surfaces: Methods and Recent Results

Abstract

The molecular arrangements of liquid tridecane near solid surfaces and in narrow slits have been studied by atomistic Monte Carlo computer simulations. A single surface perturbs the liquid over a distance of 1.5 nm, inducing the formation of progressively less dense and ordered layers of thickness 0.4 nm. Chains with atoms in the first layer tend to run parallel to the surface. The tendency to form layer structures is maintained or destroyed in narrow slits, depending on the slit thickness. For instance, it is slighly increased in slits of thickness 1.2 nm, while it is practically destroyed when the slit thickness is reduced to 1.0 nm. When added in small amounts, shorter-chain components are preferentially adsorbed at the solid surface, making the first layer of liquid in contact with these surfaces much less ordered.     

Slit sense organs on the scorpion leg (Androctonus australis L., Buthidae)

As in other arthropods the exoskeleton of arachnids is subjected to loads generated by external stimuli and behavioral activities. Far from being mere by-products of various activities such loads act as signals for mechanoreceptors capable of detecting minute displacements caused by them in the cuticle. In arachnids the slit sense organs serve in this capacity. Spiders have the most elaborate system of slit sense organs. Our previous studies clearly pointed to a functional significance of their specific location and orientation, as well as degree and type of aggregation (isolated, grouped, compound or lyriform) on respective body parts. The present study extends our work to the slit sense organs of scorpions. It gives a detailed account of the topography of the organs on the walking legs. In general slits are less orderly arranged on the legs of scorpions than on those of spiders. In the scorpion they never aggregate to form lyriform organs. Instead there are groups at comparable locations forming much more irregular, but still specific patterns. Isolated slits are more numerous on the scorpion leg, but are also less regularly distrubuted there. A common feature of the majority of slits on both the spider and the scorpion leg is their position on the lateral surfaces and their orientation roughly parallel to the long axis of the leg.     

Hemodynamic analysis of a novel stent graft design with slit perforations in thoracic aortic aneurysm

Thoracic endovascular aortic repair (TEVAR) has been introduced as a less invasive approach to the treatment of thoracic aortic aneurysm (TAA). However, the effectiveness of TEVAR in the treatment of TAA is often limited due to the complex anatomy of aortic arch. Flow preservation at the three supra-aortic branches further increases the overall technical difficulty. This study proposes a novel stent graft design with slit perforations that can positively alter the hemodynamics at the aortic arch while maintaining blood flow to supra-aortic branches. We carried out a computational fluid dynamic (CFD) analysis to evaluate flow characteristics near stented aortic arch in simplified TAA models, followed by in-vitro experiments using particle image velocimetry (PIV) in a mock circulatory loop. The hemodynamics result was studied in terms of time-averaged wall shear stress (TAWSS), oscillating shear index (OSI), and endothelial cell action potential (ECAP). The results showed that the stent graft with slit perforations can reduce the disturbed flow region considerably. Furthermore, the effect of the slits on flow preservation to the supra-aortic branches was simulated and compared with experimental results. The effectiveness of the stent graft with slit perforations in preserving flow to the branches was demonstrated by both simulated and experimental results. Low TAWSS and elevated ECAP were observed in the aortic arch aneurysm after the placement of the stent graft with slits, implying the potential of thrombus formation in the aneurysm. On the other hand, the effects of the stent grafts with full-slit design and half-slit design on the shear stress did not differ significantly. The present analysis indicated that not only could the stent graft with slit perforations shield the aneurysm from rupture, but also it resulted in a favorable environment for thrombus that can contribute to the shrinkage of the aneurysm.     

Responses of locust visual interneurones to transiently-illuminated slits,paired spots,annuli and disc arrays

One compound eye of an immobilised locust viewed a large screen on to which could be projected a slit of variable width, parallel thin slits of variable separation, large discs or annuli, pairs of small discs or large arrays of small discs. The on-response in the contralateral cervical connective, for both the DCMD and a smaller axon group (M-spikes), was recorded over a period of 2 sec coinciding with the period of illumination. The normal spontaneous discharge of the connective is described. For a single slit the DCMD response peaked in the range 0.02–0.7° of width subtense, the most common result being 0.05°. The M-axon group showed a negative peak at a corresponding subtense. Comparing the responses to single bars and paired slits of the same overall subtense, it was found that below about 1° these were not discriminated by either type of neurone. At higher subtenses the DCMD showed preference for paired slits, the M-axons for solid bars. Comparing responses to arrays of spots with those to uniformly illuminated areas, neither the DCMD nor the M-axon group showed discrimination at angles less than 1°, but at higher angles the DCMD showed preference for arrays and the M-axons for solid areas. Annuli were more effective stimuli than were discs of the same size. Near the edge of large-area targets it was possible to detect spatial transients in excitability. Two small spots produced interaction over a wide range of separations, affording evidence for wide-range mutual inhibition affecting both types of interneurone, and for short-range facilitation for the M-axon group only.     

Finite element modeling of arachnid slit sensilla—I. The mechanical significance of different slit arrays

Arachnid strain sensitive slit sensilla are elongated openings in the cuticle with aspect ratios (slit length l / slit width b) of up to 100. Planar Finite Element (FE) models are used to calculate the relative slit face displacements, D _c, at the centers of single slits and of arrangements of mechanically interacting slits under uni-axial compressive far-field loads. Our main objective is to quantitatively study the role of the following geometrical parameters in stimulus transformation: aspect ratio, slit shape, geometry of the slits‘ centerlines, load direction, lateral distance S, longitudinal shift λ, and difference in slit length Δl between neighboring slits. Slit face displacements are primarily sensitive to slit length and load direction but little affected by aspect ratios between 20 and 100. In stacks of five parallel slits at lateral distances typical of lyriform organs (S = 0.03 l) the longitudinal shift λ substantially influences slit compression. A change of λ from 0 to 0.85 l causes changes of up to 420% in D _c. Even minor morphological variations in the arrangements can substantially influence the stimulus transformation. The site of transduction in real slit sensilla does not always coincide with the position of maximum slit compression predicted by simplified models. An erratum to this article can be found at     

The Microscopic Anatomy and Ultrastructure of Gill Slits in the Appendicularian <Emphasis Type="Italic">Oikopleura gracilis</Emphasis> Lohmann, 1896 (Tunicata: Oikopleuridae)

The morphology of gill slits in the appendicularian Oikopleura gracilis (Oikopleuridae) has been studied using light, scanning, and transmission-electron microscopy. The gill slits are a pair of tube-shaped outgrowths of the single-layered flat epithelium of the ventro-lateral pharynx wall. Each gill slit, in its middle part, has a thickening in the form of a ciliated epithelium, which is referred to as a ciliary ring, or stigma. It is formed by cells of two types: multiciliated cells, arranged in four parallel rows, and two rows of higher parietal cells, which form a kind of pocket for the first type of cells. The gill-slit epithelium contacts the single-layered epidermis of the pharyngo-branchial and digestive compartments of the trunk; thus, the pharyngeal cavity is connected with the external environment through the gill slits. The issue of the oligomerization of gill slits in appendicularians is discussed in the context of the hypothesis of their neotenic origin from the ancestral larvae of ascidians.     

Simple photometric auxanometers of high sensitivity

The elongation phase of growth of plant parts, as 1-cm segments excised from wheat coleoptiles here, is very simply recorded photometrically. One or more aligned segments submerged in aerated buffer pushed an Al foil shutter over a slit of light incident on a photodetector such as a solar or photronic cell, connected directly to a recorder, or a photomultiplier tube in a commercial photometer. Convenient kinetic records were obtained at 5 mm per min chart speed when one segment was combined with a 1-mm long slit, or more segments and longer slits, for which a 1-mm chart unit usually exceeded noise and was equivalent to 4 mum growth per cm coleoptile. In the presence of 10 cm of coleoptile segments no replenishment of solution was necessary during kinetic measurements of response in a 50-ml reservoir of IAA more concentrated than 30 nm.     

Proprioceptors and sensory nerves in the legs of a spider,Cupiennius salei (Arachnida,Araneida)

Summary Retrograde CoS-impregnation was used to trace and map the course of sensory nerves and the distribution and innervation of the various proprioceptor types in all leg segments of Cupiennius salei, a Ctenid spider.1. Sensory nerve branches. In both the tibia and femur, axons of all proprioceptor types ascend in just two lateral nerves which do not merge with the main leg nerve until they reach the next proximal joint region. In the short segments — coxa, trochanter, patella, and tarsus — axons of the internal joint receptors often run separately from those of the other sensilla. Axons of the large lyriform slit sense organ at the dorsal metatarsus and of the trichobothria join with only a few hair axons and form their own nerve branches (Figs. 1, 2, 3).2. Proprioceptors. Each of the seven leg joints is supplied with at least one set of the well-known internal joint receptors, slit sensilla (single slits and lyriform organs), and long cuticular hairs. In addition, we found previously unnoticed hair plates on both sides of the coxa, near the prosoma/coxa joint; they are deflected by the articular membrane during joint movements (Fig. 4).3. Sensory cells and innervation. CoS-impregnation shows that each slit of the slit sense organs — be it a single slit or several slits in a lyriform organ — is innervated by two bipolar sensory cells (Fig. 6). We also confirm previous reports of multiple innervation in the internal joint receptors and in the long joint hairs and cuticular spines.Most of the ascending nerve branches run just beneath the cuticle for at least a short distance (Fig. 5); hence they are convenient sites for electrophysiological recordings of sensory activity even in freely walking spiders.     

Engineering slit-like channels for studying the growth of epithelial tissues in 3D-confined spaces

The development of epithelial lumens in ducts is essential to the functioning of various organs and in organogenesis. Ductal elongation requires the collective migration of cell cohorts in three-dimensional (3D) confined spaces, while maintaining their epithelial integrity. Epithelial lumens generally adopt circular morphologies, however abnormalities in complex physiological environments can lead to the narrowing of glandular spaces that adopt elongated and slit-like morphologies. Here, we describe a simple method to form epithelial tissues in microchannels of various widths (100–300 µm) with a constant height of 25 µm that mimic elongated geometries of glandular spaces. The significance of this biomimetic platform has been evidenced by studying the migration of epithelial cell sheets inside these narrow slits of varying dimensions. We show that the growth of epithelial tissues in 3D-confined slits leads to a gradient of cell density along the slit axis and that the migration cell velocity depends on the extent of the spatial confinement. Our findings indicate that nuclear orientation is higher for leader cells and depends on the slit width, whereas YAP protein was predominantly localized in the nucleus of leader cells. This method will pave the way to studies aiming at understanding how 3D-confined spaces, which are reminiscent of in vivo pathological conditions, can affect the growth and the homeostasis of epithelial tissues.     

Glomerular permeability in the bullfrog Rana catesbeiana

Filtration studies suggest similar size pores in the glomerular filters of mammals and amphibians. However, the glomerular wall in the bullfrog exhibits several structural features not found in mammals. The subendothelial space of the basement membrane is often greatly enlarged and infiltrated by cellular elements. The lamina densa of the basement membrane shows extensive variation in thickness and packing of its filaments. On the other hand, the epithelial slits in the bullfrog are closed by a slit diaphragm which appears similar in size and structure to the slit diaphragm in mammals. Horse spleen ferritin, a protein with a hydrodynamic radius of 61 A, was used as an ultrastructural tracer to determine whether the highly variable structure of the basement membrane renders this layer more permeable than its mammalian counterpart. Within 10 min after intravenous injection, ferritin was found throughout the basement membrane and often in clusters within the subepithelial layer adjacent to the slit diaphragm. Virtually no ferritin was found within the urinary space, podocytes, or cells of the proximal tubule. Ferritin distribution was the same in both superficial glomeruli and more deeply lying glomeruli regardless of the method of fixation. These results indicate that in the bullfrog the slit diaphragm is a principal filtration barrier to ferritin and thus to smaller plasma proteins.     

A stereological study of the glomerular filter in the rat. Morphometry of the slit diaphragm and basement membrane

Kidney from normal male albino rats, of body weight 170-200 g, was fixed by arterial perfusion with buffered tannic acid-glutaraldehyde, and postfixed with osmium tetroxide. Random and isotropic ultrathin sections from 23 different glomeruli from five rats were mounted on slot grids for staining and electron microscopy. Prints of whole glomeruli at a magnification of 3,909 were analyzed by stereological methods. The mean glomerular volume was (8.048 +/- 0.474) X 10(5) mum3 if the glomeruli are treated as spheres. The area of the basement membrane was 0.281 +/- 0.017 mm2 per glomerulus, of which 0.184 +/- 0.011 mm2 represents peripheral basement membrane. The aggregate epithelial slit length per glomerulus was 65.19 +/- 3.84 cm, of which 48.69 +/- 2.87 cm represents epithelial slits abutting on the peripheral basement membrane. Assuming that a slit diaphragm is 390 A wide, and that the pores of the slit diaphragm represent 26% of its area, the mean pore area is 3.96 cm2, of which 2.96 cm2 represents the area of peripheral pores. These findings are discussed in the context of the hydrodynamic theory of glomerular ultrafiltration. We conclude that the porous substructure of the glomerular slit diaphragm is significant in determining the hydraulic conductivity of the glomerulus and hence also solute flux during ultrafiltration.