Cryptic species and morphological plasticity in long-lived bivalves (Unionoida: Hyriidae) from inland Australia

Molecular (mitochondrial DNA, isozyme) and morphological diversity of freshwater mussels (Family Hyriidae) was examined at 21 sites encompassing four large river systems, across southwest Queensland, Australia. Evidence was found for two major morphological groups. One group, which occurred in every river system, closely matched a recognized species (Velesunio ambiguus) both morphologically and in a well-supported lineage within a mitochondrial phylogeny generated from partial cytochrome c oxidase subunit I (COI) sequences. The second group most closely matched Velesunio wilsonii in shell morphology but formed three deeply divergent mitochondrial DNA lineages. All four lineages occurred sympatrically in some areas and displayed corresponding fixed differences at nuclear allozyme loci, which suggests an absence of recent hybridization and the presence of separate species.     

Phylogeography of the widespread Australian freshwater prawn, Macrobrachium australiense (Decapoda, Palaemonidae)

Aim To investigate the phylogeographic structure of the widespread freshwater prawn, Macrobrachium australiense, within and between major Australian drainage basins using mitochondrial sequence data. This will enable the investigation of historical connections between major drainages and examination of hypotheses of biogeographic associations among Australian freshwater basins. Location Inland, eastern and northern Australia. Methods Sequencing 16S rRNA and ATPase 6 protein coding mitochondrial DNA genes from M. australiense from 19 locations from inland, eastern and northern Australia. Results Within drainage basins, haplotype trees are monophyletic, with the exception of the Finke River from the Lake Eyre Basin. Macrobrachium australiense from the two main inland drainages, the Murray–Darling and Lake Eyre Basin are divergent from each other and do not form a monophyletic group, instead the Murray–Darling Basin haplotypes clade with eastern coastal haplotypes. Haplotypes from neighbouring eastern coastal drainages were found to be quite divergent from each other. Main conclusions The phylogeographic relationships among M. australiense suggest that the two major inland drainages, the Murray–Darling Basin and the Lake Eyre Basin, are not biogeographically closely associated to each other. Instead the Murray–Darling Basin is more closely allied with the eastern coastal drainages across the Great Dividing Range. Despite their proximity the neighbouring southeast Queensland coastal Mary and Brisbane Rivers are also biogeographically divergent from each other. The results also indicate that the Finke River appears to have been isolated from the remainder of the Lake Eyre Basin catchment for a significant period of time.     

Reproductive phenology of river and lake populations of freshwater mussels (Unionida: Hyriidae) in the River Murray

Gonadal cycles are described for Alathyria jacksoni and Velesunio ambiguus from the River Murray at Overland Corner (near Lock 3) and for V. ambiguus at Point Sturt, Lake Alexandrina. The study included periods of low flow (1982), minor flooding (1983) and intermediate flow (1986). In males, gametogenesis continued year-round with fertilisation in late winter. Female A. jacksoni brooded embryos in spring and released glochidia during spring and summer, whereas in female V. ambiguus, glochidia were present most of the year, with peak releases in spring and summer. In both species, the proportions of actively reproducing individuals varied. In the Murray, populations were influenced by variations in discharge. At Point Sturt, gonadal cycles in V. ambiguus were irregular, influenced by variable lake levels. Although both species are essentially gonochoristic, there were hermaphrodites in river and lake populations, and a female bias in the population at Point Sturt. Infections by parasitic trematodes at Point Sturt were rare, but occurred in 10% of A. jacksoni and 35% of V. ambiguus at Overland Corner. The river populations were also affected by gill damage due to unionicolid mites. The disparities in infections between river and lake mussels are unexplained, but did affect their reproductive activity.     

The effect of landscape processes upon gene flow and genetic diversity in an Australian freshwater fish, Neosilurus hyrtlii

1. Flow regime and riverine architecture are two important landscape characteristics that influence genetic diversity and gene flow in riverine species.
2. Using population genetic markers (mtDNA, microsatellites and allozymes), this study aimed to investigate genetic diversity and gene flow in the freshwater fish, Neosilurus hyrtlii , across two major drainage divisions in northern and central Australia (the Gulf of Carpentaria and Lake Eyre basins). These basins lie adjacent to each other and differ in their hydrological inputs and riverine structure, providing an ideal opportunity to identify the impact of landscape processes upon population dynamics of freshwater fish.
3. Populations were strongly structured among basins, among catchments within basins and were weakly structured within catchments in the Lake Eyre Basin, providing support for the Stream Hierarchy Model.
4. Interestingly, mtDNA and microsatellite diversity was much higher in the Gulf of Carpentaria Basin compared to the Lake Eyre Basin. It was concluded that this difference was due to the extreme hydrological variability in this basin and boom-bust population cycles resulting in smaller effective population sizes in the Lake Eyre Basin.     

Systematics of African lowland rainforest Praomys (Rodentia, Muridae) based on molecular and craniometrical data

Representatives of the genus Praomys occur throughout the African intertropical zone. It is unclear how many species this genus contains, nor do we know the exact distribution ranges and phylogenetic relationships of these taxa. Using molecular (16S rRNA gene sequencing) and morphological (multivariate craniometry) analyses we clarify the taxonomy and phylogenetic relationships among the Praomys occurring in Africa's lowland tropical rainforests. We studied most species known from this area, based on specimens collected in seven countries (Guinea, Ivory Coast, Cameroon, Central African Republic, Gabon, Congo Republic and Democratic Republic of Congo). In our study, Praomys appears to be monophyletic. Our results identify two species complexes: the jacksoni complex includes at least two species ( P. jacksoni and P. mutoni ) and the tullbergi complex contains at least four species ( P. tullbergi , P. rostratus , P. misonnei , P. petteri ). Although the 16S rRNA gene appears insufficient to resolve the phylogenetic relationships among all the members of the tullbergi species complex, it is suitable for the identification of most of the studied species, and its use has allowed us to redefine the geographical limits of several species.  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 145 , 539–553.     

Taxonomic and evolutionary relationships in the genus Vella L. (Cruciferae)

Thirty-two differential characters are numerically analysed for the six existing taxa of the genus Vella L. The closely related monotypic genus Boleum Desv. is also included for comparison. Most of the characters used are morphological, but cariological, ecological and biogeographical aspects have also been studied. The results indicate that four distinct species, one ( V. pseudocytisus L.) with three sub-species, should be distinguished. The new combination V. anremerica (Lit. et Maire) Gómez-Campo (basionym: V. pseudocytisus L. subsp. anremerica Lit. et Maire) and the new name V. pseudocytisus L. subsp. paui Gómez-Campo for V. pseudocytisus L. var. glabrescens Willk., nornen nudum are presented. A key is given to aid identification of these taxa. Their conservation status is also discussed.     

A NEW SEMLIKIICHTHYS FISH (TELEOSTEI, PERCIFORMES) FROM THE UPPER MIOCENE OF CHAD: FOSSIL RECORD AND PALAEOBIOGEOGRAPHICAL IMPLICATIONS

Abstract:  Semlikiichthys is a fossil genus of perciform fish from the Neogene continental deposits of Africa. Until now, it was known in Mio-Pliocene sites of the Great Lake Region and of the River Nile by a single species, S. rhachirhinchus . Here, we describe new Semlikiichthys material recovered from Central Africa (Upper Miocene of Toros-Menalla, western Djurab, Chad), and compare it to S. rhachirhinchus , which is the only known species of the genus, and also with Lates niloticus , which is the fish in African Neogene deposits that most closely resembles it. We attribute the Chadian material to Semlikiichthys darsao sp. nov., based on ten osteological characters of the neurocranium, the maxilla, the dentary and the first vertebra. Our comparative anatomical study also enables us to provide a revised diagnosis for the genus and to reconsider the taxonomic attribution of the fossils assigned to it. Furthermore, the fossil record of Semlikiichthys supports a connection between sub-basins of the Nilo-Sudanese region during the Miocene, and a disruption between the Great Lake and the Nile Basin on the one hand and the Chadian Basin on the other before 7 Ma.     

New species of the myrmecophile Polyplocotes Westwood (Coleoptera: Ptinidae) from South Australia

Six new species of the Australian myrmecophilous ptinid genus Polyplocotes are described from South Australia. Three are from the deserts of central Australia, one from the Franklin Islands in the Great Australian Bight, one from Eyre Peninsula and one from the Riverland region. Morphologically, the majority of these new species are conventional Polyplocotes , but two are less typical. The characters uniting the genus are explored in the discussion, and comparisons are made to related genera. Although the six new species described here have not been observed in the field, the species of this genus are known to be myrmecophilous, and ant – beetle interactions similar to those seen in other spider beetles might occur between these new species and their host ants.     

Euchlorocystis gen. nov. and Densicystis gen. nov., Two New Genera of Oocystaceae Algae from High‐altitude Semi‐saline Habitat (Trebouxiophyceae,Chlorophyta)

The Oocystaceae family is generally considered to contain common freshwater eukaryotic microalgae, and few are reported living in semi‐saline habitats. Our latest ecological survey in Qinghai Lake and Angzicuo Lake, both large, closed, high‐altitude, semi‐saline lakes located on the Qinghai‐Tibet plateau in China, revealed Oocystaceae species as a dominant group among plankton. Since limited knowledge exists about semi‐saline species in the Oocystaceae family, a taxonomical study was carried out using morphological and phylogenetic methods. Using this approach, four new strains of Oocystaceae were identified and successfully cultured in the lab. Molecular results correlated with morphological characters and resolved these species into at least three genera. A new genus, Euchlorocystis, with type species Euchlorocystis subsalina, is described here as having the distinctive morphology of multiple pyrenoids per chloroplast among Oocystaceae, and an independent phylogenetic position at the base of the Oocystaceae. Similarly, the genus Densicystis, with type species Densicystis glomerata, is newly proposed here as having a unique colony morphology of dozens or hundreds of little cells tightly embedded in ellipsoid to round mucilage masses. Oocystis marina, originally described from the Baltic Sea, was also identified in Qinghai Lake and Angzicuo Lake and phylogenetically positioned in the semi‐saline clade of the Oocystaceae. The result that a marine species was detected in the closed inland lakes implies a further need to reevaluate the origins of these species.     

Evidence for multiple historical colonizations of an endoreic drainage basin by an Australian freshwater fish

The contemporary and historical colonization capacity of an Australian freshwater fish, north-west glassfish Ambassis sp., was tested using mtDNA sequence data and six newly developed microsatellite loci in an endoreic basin in central Australia. Overall, Ambassis sp. exhibited weak genetic structure within catchments, suggesting some capacity to recolonize extirpated waterholes after disturbance. Genetic structure revealed that the historical pattern of connectivity among catchments in the Lake Eyre Basin was dramatically different from other species studied in this region. Two highly divergent clades were detected in separate catchments in the basin. mtDNA from individuals sampled in catchments north of the Lake Eyre Basin suggest that Ambassis sp. has colonized on two separate occasions from catchments in northern Australia, subsequently generating two highly divergent lineages.     

Relationships, classification and evolution of Scleranthus (Caryophyllaceae) as inferred from analysis of morphological characters

Study of floral anatomy, micromorphology, palynology and onotogeny has revealed new characters for phylogenetic analysis in the genus Scleranthus . Cladistic analysis of these characters, along with those previously available, suggests that the genus consists of Eurasian/Mediterranean and Australasian sister clades. Gynoecial morphology and development are closely similar in all species, suggesting the genus is monophyletic despite its disjunct northern and southern hemisphere distribution. Variation in pollen:ovule ratios and their implications for the evolution of Scleranthus species are also discussed and it is concluded that a range of breeding strategies intermediate between autogamy and xenogamy exists in the genus. Single-stamened species of Scleranthus are likely to be obligate autogams, despite their comparatively high pollen:ovule ratios in relation to autogamic species of other genera.  © 2002 The Linnean Society of London, Botanical Journal of the Linnean Society , 2002, 140 , 15–29.     

裸盖菇属的真菌鉴定及分子系统学初探

裸盖菇属(Psilocybe)的许多真菌含有神经致幻型毒素,这些毒素被中国卫生部列为A类管制药品。在药检时,这些真菌样品通常是粉末。因此,仅依靠形态分类鉴定该类真菌非常困难。研究采用ITS序列分析的方法鉴定该类真菌并初步探讨了该属种间的系统发育关系。由系统发育树推断Psilocybe属可能是多源进化的。通过序列分析可以鉴定真菌样品为Psilocybe属。     

A new subfamily, two new genera and three new species of Aclerdidae (Hemiptera: Coccoidea) from southern Africa, with a phylogenetic analysis of relationships

Abstract A new aclerdid genus, Lecanaclerda Hodgson & Millar, closely related to Aclerda but with fully developed legs and antennae, is introduced for a new new species, L. macropoda Hodgson & Millar, for which the male and female are described. In addition, genus Rhodesaclerda McConnell is revised and all known stages of existing species, R. combreticola McConnell and R. halli McConnell, are redescribed. The crawler, second-instar female, pupa and the adult male and female of a new species, R. insleyae Hodgson & Millar, from South Africa are also described. Another new genus, Kwazulaclerda Hodgson & Millar, close to Rhodesaclerda , is introduced and the crawler, second-instar female, second-instar male, pupa and adult male and female of the new species K. loranthi Hodgson & Millar from Kwazulu-Natal are described. A phylogenetic analysis based on adult macropterous male characters was undertaken to look at the relationships of these species with other Coccoidea. It is concluded that Lecanaclerda is closely related to Aclerda , Kwazulaclerda is closely related to Rhodesaclerda , Kwazulaclerda and Rhodesaclerda belong to Aclerdidae, and Aclerdidae should be split into two subfamilies, Rhodesaclerdinae Hodgson & Millar (to include Rhodesaclerda and Kwazulaclerda ) and Aclerdinae Cockerell (to include Aclerda , Lecanaclerda and Nipponaclerda ). These two subfamilies are diagnosed and a key is given for the separation of the genera now included in Aclerdidae. The relationships of Aclerdidae and Coccidae are discussed.     

Zhailimeryx, A New Lophiomerycid Artiodactyl (Mammalia) from the Late Middle Eocene of Central China and the Early Evolution of Ruminants

A new genus and species of primitive selenodont artiodactyl, Zhailimeryx jingweni, occurs in the late middle Eocene Zhaili Member of the Heti Formation, Yuanqu Basin, Shanxi Province, China. A phylogenetic analysis of dental characters suggests that Zhailimeryx is closely related to Lophiomeryx and other lophiomerycid ruminants of Asia and Europe. Zhailimeryx and other Eocene records of Lophiomerycidae from Asia support an Asian origin for this family, followed by dispersal into Europe both before and after the Grande Coupure. Morphological evidence from Zhailimeryx suggests that ruminant artiodactyls had already undergone substantial diversification prior to the late middle Eocene, and it reopens the issue of whether the higher taxa Tragulina and Pecora are valid expressions of ruminant phylogeny.     

Continental impacts of water development on waterbirds,contrasting two Australian river basins: Global implications for sustainable water use

The world's freshwater biotas are declining in diversity, range and abundance, more than in other realms, with human appropriation of water. Despite considerable data on the distribution of dams and their hydrological effects on river systems, there are few expansive and long analyses of impacts on freshwater biota. We investigated trends in waterbird communities over 32 years, (1983–2014), at three spatial scales in two similarly sized large river basins, with contrasting levels of water resource development, representing almost a third (29%) of Australia: the Murray–Darling Basin and the Lake Eyre Basin. The Murray–Darling Basin is Australia's most developed river basin (240 dams storing 29,893 GL) while the Lake Eyre Basin is one of the less developed basins (1 dam storing 14 GL). We compared the long‐term responses of waterbird communities in the two river basins at river basin, catchment and major wetland scales. Waterbird abundances were strongly related to river flows and rainfall. For the developed Murray–Darling Basin, we identified significant long‐term declines in total abundances, functional response groups (e.g., piscivores) and individual species of waterbird (n = 50), associated with reductions in cumulative annual flow. These trends indicated ecosystem level changes. Contrastingly, we found no evidence of waterbird declines in the undeveloped Lake Eyre Basin. We also modelled the effects of the Australian Government buying up water rights and returning these to the riverine environment, at a substantial cost (>3.1 AUD billion) which were projected to partly (18% improvement) restore waterbird abundances, but projected climate change effects could reduce these benefits considerably to only a 1% or 4% improvement, with respective annual recovery of environmental flows of 2,800 GL or 3,200 GL. Our unique large temporal and spatial scale analyses demonstrated severe long‐term ecological impact of water resource development on prominent freshwater animals, with implications for global management of water resources.     

Conservation of cytoplasmic organization in the cystidia of Suillus species

Cystidia of Suillus americanus and S. granulatus (Boletales) were examined cytochemically and ultrastructurally with cells prepared by freeze substitution. We present the first study showing ultrastructural details and cytological functions of the cystidium to be conserved in two closely related species. The results are presented for inclusion in the AFTOL Structural and Biochemical Database to aid in the application of morphological characters to phylogenetic studies. The cystidia of these Suillus species appear to be united by a series of conserved characters, including specialized secretion mechanisms, smooth tubular endoplasmic reticulum and abundant free ribosomes. The conservation of these subcellular traits among members of this genus suggests that ultrastructural details of cystidia may provide a suite of phylogenetically informative characters. Inclusion of such characters in phylogenetic analyses might resolve or provide support for monophyletic groups at the level of family or genus.     

Comments on the gonotyl of Proctocaecum macroclemidis (Tkach and Snyder, 2003) n. comb. (Digenea: Acanthostomidae: Acanthostominae), with a key to the genera of acanthostominae and new phylogenetic tree for Proctocaecum Baugh, 1957

The species recently described as Acanthostomum macroclemidis possesses the gonotyl in the form of a solid muscular pad uniquely diagnostic for species of Proctocaecum and is accordingly transferred to that genus. An artificial key to the 5 acanthostomine genera, as well as an updated phylogenetic hypothesis for the 10 known species of Proctocaecum, based on 11 characters and including 2 species described since the last phylogenetic analysis, are presented. The single most parsimonious phylogenetic tree with a consistency index of 87.5% suggests that Proctocaecum originated in Africa and spread to North America and South America before the breakup of Pangaea. As a result, the 2 North American and 1 South American species are most closely related to different African members of the genus. African and Indo-Pacific species inhabit crocodylids; hence, the occurrence of North American species in alligatorids and chelonians and a South American species in alligatorids are the result of host switches.     

强壮粗体虫的线粒体基因组及棘头虫的系统发育研究

通过长距离PCR方法,克隆了鳜（Siniperca chuatsi Basilewsky）肠道内寄生虫强壮粗体虫（Hebesoma violentum Van Cleave）线粒体基因组全长序列,共13393 bp （GenBank登录号:KC415004）,有36个基因,其中蛋白编码基因12个,核糖体基因2个,tRNA22个。所有基因均由线粒体基因组同一条链按同一个方向转录。利用该线粒体基因组和已经报道的一些轮虫纲种类的线粒体基因组序列,构建了棘头虫和轮虫的系统发育树。系统发育研究表明:包括强壮粗体虫、隐藏新棘虫Pallisentis celatus（Van Cleave）和Paratenuisentis ambiguous（Van Cleave）在内的始新棘头虫纲（Eoacanthocephala）与古棘头虫纲（Palaeacanthocephala）亲缘关系较近,聚为一枝后再与原棘头虫纲（Archiacanthocephala）聚在一起;棘头虫与双巢类轮虫（Bdelloid）亲缘关系最近,聚为一枝,然后再与单巢类轮虫（Monogonont）聚在一起,表明棘头虫和轮虫具有较近的亲缘关系。       

The evaluation for generic-level monophyly of Ancyrocephalinae (Monogenea, Dactylogyridae) using ribosomal DNA sequence data

To overcome the limited regional and taxonomic coverage in previous studies of the Ancyrocephalinae (Monogenea, Dactylogyridae), we present further findings on the molecular systematics and phylogeny of a broader selection of specimens, aiming to build a molecular phylogeny of the Ancyrocephalinae, and to assess the monophyly of each available genus, using D1-D2 domain of LSU rDNA and the combined LSU and partial sequence of SSU rDNA data sets. Our studies showed that 18 Haliotrema species were highly dispersive to form several clades with species from ten closely related genera. The host range of Euryhaliotrematoides species was not only restricted in butterfly fishes (Chaetodontidae), but widen to include the Lutjanidae. Euryhaliotrema was phylogenetically more closely related to Aliatrema than to Euryhaliotrematoides. Given that the species Haliotrema kurodai, Haliotrema spirotubiforum and Haliotrema anguiformis had a funnel-shaped base of the coiled male copulatory organ (MCO) lacking an accessory piece, and our molecular evidence, we proposed to transfer the three species to the Aliatrema as new combinations. We proposed to combine Bravohollisia and Caballeria into one genus, mainly based on molecular evidence and their similar MCO characters. Using SSU+ITS1 data set, Scutogyrus was robustly resolved as a polyphyletic group and its status should be questioned. Based on the present molecular evidence and their similar MCO characters, we proposed to combine Cichlidogyrus and Scutogyrus into one genus, Cichlidogyrus, by treating Scutogyrus as the synonym of Cichlidogyrus. Generally, the present study indicated that the vagina can make little contribution for understanding the generic-level monophyly, due to its high variability even among phylogenetically very closely related species, but it was useful for species determination. Given that phylogenetically closely related species from the same or closely related host species may have similar MCO characters but distinct haptoral characters, we consider that it is dangerous to erect a genus mainly based on different haptoral characters, particularly those separated from existing genera. The resultant phylogenetic reconstructions indicated that the radiation of some Haliotrema species has correlated with their hosts, because species from closely related fishes have correspondingly shown close relationships. Though the present study can not provide the comparison of host-parasite associations, phylogenetically closely related Haliotrema species which have similar morphological characters (both MCOs and haptors) but distinct/distantly related host species may indicate a speciation model of host-switching.     

Comparative analysis of phylogenetic relationships of grain amaranths and their wild relatives (Amaranthus; Amaranthaceae) using internal transcribed spacer, amplified fragment length polymorphism, and double-primer fluorescent intersimple sequence repeat markers.

The most economically important group of species in the genus Amaranthus is the A. hybridus species complex, including three cultivated grain amaranths, A. cruentus, A. caudatus, and A. hypochondriacus, and their putative wild progenitors, A. hybridus, A. quitensis, and A. powellii. Taxonomic confusion exists among these closely related taxa. Internal transcribed spacer (ITS) of nuclear ribosomal DNA, amplified fragment length polymorphism (AFLP), and double-primer fluorescent intersimple sequence repeat (ISSR) were employed to reexamine the taxonomic status and phylogenetic relationships of grain amaranths and their wild relatives. Low ITS divergence in these taxa resulted in poorly resolved phylogeny. However, extensive polymorphisms exist at AFLP and ISSR loci both within and among species. In phylogenetic trees based on either AFLP or ISSR or the combined data sets, nearly all intraspecific accessions can be placed in their corresponding species clades, indicating that these taxa are well-separated species. The AFLP trees share many features in common with the ISSR trees, both showing a close relationship between A. caudatus and A. quitensis, placing A. hybridus in the same clade as all grain amaranths, and indicating that A. powellii is the most divergent taxon in the A. hybridus species complex. This study has demonstrated that both AFLP and double-primer fluorescent ISSR have a great potential for generating a large number of informative characters for phylogenetic analysis of closely related species, especially when ITS diversity is insufficient.