Seasonal succession of phytoplankton in an ice-free pond warmed by a thermal power plant

In a pond receiving warmed cooling waters from a thermal power plant, the physical and chemical properties of the water, phytoplankton, periphyton and zooplankton were monitored on a weekly sampling schedule. In winter the phytoplankton growth was limited by poor light conditions. In mid-February a rapid phytoplankton growth started, simultaneously with increasing light energy, high nutrient concentrations and small herbivorous zooplankton populations. The increase of phytoplankton biomass was stopped by lack of free nutrients and silica at the end of March. From May until August the phytoplankton standing crop was mainly regulated by herbivorous zooplankton. The autumnal maximum of phytoplankton occurred with decreasing zooplankton populations, increasing nutrient concentrations, a turbulence favourable for diatoms and high water temperature.     

Extreme weather events influence the phytoplankton community structure in a large lowland subtropical lake (Lake Okeechobee, Florida, USA)

We demonstrate a major ecological change in a large lake ecosystem in response to a series of extreme weather events. Phytoplankton community dynamics in subtropical Lake Okeechobee are described from 2000 through early 2008 with emphasis on inter-relationships among phytoplankton populations and associated environmental variables in this large, shallow eutrophic lake. The lake experienced the physical effects of three hurricanes in 2004–2005, which caused massive sediment resuspension, near total elimination of submerged aquatic vegetation, elevated biologically available nutrients and total suspended solids, and lower water transparency. Patterns of long-term co-dominance by nitrogen (N)-fixing cyanobacteria and meroplanktonic diatoms abruptly changed to dominance by only meroplanktonic diatoms. The planktonic cyanobacteria genera Anabaena and Planktolyngbya both decreased approximately an order of magnitude in the post-hurricane period despite large surpluses of bioavailable nutrients. Meroplanktonic diatoms (mostly Aulacoseira spp.) declined approximately 20%, perhaps because of superior competitive ability for light in a polymictic, turbid water column. Canonical Correspondence Analysis (CCA) suggested that reduction in planktonic cyanobacteria after compression of the photic zone and the persistence of meroplanktonic diatoms were related to light utilization traits for the key algal taxa and indicated that pre-existing light limitation and crustacean grazing pressure were intensified in the post-hurricane period.     

The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum

Background

Marine diatoms constitute a major component of eukaryotic phytoplankton and stand at the crossroads of several evolutionary lineages. These microalgae possess peculiar genomic features and novel combinations of genes acquired from bacterial, animal and plant ancestors. Furthermore, they display both DNA methylation and gene silencing activities. Yet, the biogenesis and regulatory function of small RNAs (sRNAs) remain ill defined in diatoms.

Results

Here we report the first comprehensive characterization of the sRNA landscape and its correlation with genomic and epigenomic information in Phaeodactylum tricornutum. The majority of sRNAs is 25 to 30 nt-long and maps to repetitive and silenced Transposable Elements marked by DNA methylation. A subset of this population also targets DNA methylated protein-coding genes, suggesting that gene body methylation might be sRNA-driven in diatoms. Remarkably, 25-30 nt sRNAs display a well-defined and unprecedented 180 nt-long periodic distribution at several highly methylated regions that awaits characterization. While canonical miRNAs are not detectable, other 21-25 nt sRNAs of unknown origin are highly expressed. Besides, non-coding RNAs with well-described function, namely tRNAs and U2 snRNA, constitute a major source of 21-25 nt sRNAs and likely play important roles under stressful environmental conditions.

Conclusions

P. tricornutum has evolved diversified sRNA pathways, likely implicated in the regulation of largely still uncharacterized genetic and epigenetic processes. These results uncover an unexpected complexity of diatom sRNA population and previously unappreciated features, providing new insights into the diversification of sRNA-based processes in eukaryotes.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-698) contains supplementary material, which is available to authorized users.     

A comparative review of short and long neuropeptide F signaling in invertebrates: Any similarities to vertebrate neuropeptide Y signaling?

Neuropeptides referred to as neuropeptide F (NPF) and short neuropeptide F (sNPF) have been identified in numerous invertebrate species. Sequence information has expanded tremendously due to recent genome sequencing and EST projects. Analysis of sequences of the peptides and prepropeptides strongly suggest that NPFs and sNPFs are not closely related. However, the NPFs are likely to be ancestrally related to the vertebrate family of neuropeptide Y (NPY) peptides. Peptide diversification may have been accomplished by different mechanisms in NPFs and sNPFs; in the former by gene duplications followed by diversification and in the sNPFs by internal duplications resulting in paracopies of peptides. We discuss the distribution and functions of NPFs and their receptors in several model invertebrates. Signaling with sNPF, however, has been investigated mainly in insects, especially in Drosophila. Both in invertebrates and in mammals NPF/NPY play roles in feeding, metabolism, reproduction and stress responses. Several other NPF functions have been studied in Drosophila that may be shared with mammals. In Drosophila sNPFs are widely distributed in numerous neurons of the CNS and some gut endocrines and their functions may be truly pleiotropic. Peptide distribution and experiments suggest roles of sNPF in feeding and growth, stress responses, modulation of locomotion and olfactory inputs, hormone release, as well as learning and memory. Available data indicate that NPF and sNPF signaling systems are distinct and not likely to play redundant roles.     

Temporal organization of phytoplankton communities linked to physical forcing

The performance of individual phytoplankton species is strongly governed by the thermal stratification’s impact on vertical mixing within the water column, which alters the position of phytoplankton relative to nutrients and light. The present study documents shifts in phytoplankton structure and vertical positioning that have accompanied intensified long-term stratification in a natural ecosystem. Ordination analysis is used to extract gradients in phytoplankton composition in Lake Tahoe, an extremely nutrient-poor lake, over a 23-year period of records. Community structure in the 1980s was associated most strongly with resource availability (low nitrogen to phosphorus ratios, deeper euphotic zone depth), while intensified stratification dominated the phytoplankton structure since the late 1990s. Within diatoms, small-sized cells increased with reduced mixing, suggesting that suppressed turbulence provides them with a competitive advantage over large-sized cells. Among the morphologically diverse chlorophytes, filamentous and coenobial forms were favored under intensified stratification. The selection for small-sized diatoms is accompanied by a shoaling trend in their vertical position in the water column. In contrast, the motile flagellates displayed a deeper vertical positioning in recent years, indicating that optimal growth conditions shifted likely due to reduced upwelling of nutrients. As the thermal stratification of lakes and oceans is strongly linked to climate variables, the present study confirms that climate warming will alter phytoplankton structure and dynamics largely through effects on nutrient availability and sinking velocities. Intensified stratification should favor the expansion of small-sized species and species with the capability of buoyancy regulation, which may alter primary productivity, nutrient recycling, and higher trophic productivity. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Development of phytoplankton in Lake Pääjärvi (Finland) during under-ice convective mixing period

The development of winter phytoplankton communities was studied in both shallow and deep areas of Lake Pääjärvi, southern Finland, during the final 2 weeks of winter ice cover. Phytoplankton was mainly composed of diatoms, cryptophytes and chrysophytes. The diatoms Aulacoseira and Rhizosolenia were always uniformly distributed with depth, initially probably due to mixing induced by heat flux from the sediment and later due to thermal convection. Motile Rhodomonas cryptophytes and Chrysococcus chrysophytes were most abundant near the ice showing that, despite their small size, they were partly able to resist mixing by convection. Their ability to stay in more illuminated water layers was reflected in net rates of increase about an order of magnitude higher than those of diatoms in the middle of the lake. Given the low temperatures and convection, the observed net rates of increase of motile taxa were very high compared to growth rates reported in the literature. The gradual increase in light availability following melting of ice led to a consistent increase in the abundances of major phytoplankton taxa irrespective of deep convective circulation. It is suggested that those algae most abundant at the time of ice break have a competitive advantage in the following open water conditions when nutrients are abundant but deep water circulation limits light availability. The results emphasize that in lakes which cool below the maximum density of water before freezing, apparently small differences in temperature and light conditions can cause important changes in the circulation patterns that impact on phytoplankton development.     

The effects of nutrients and their ratios on phytoplankton abundance in Junk Bay,Hong Kong

Eutrophication has been considered to be undoubtedly one of the key factors stimulating phytoplankton growth, since it involves the enrichment of a water mass with both inorganic and organic nutrients supporting plant growth. Nutrient enrichment as a result of anthropogenic activity occurs in estuaries and coastal waters as well as in lakes and freshwater impoundments, and blooms of phytoplankton are one of the effects of such an accelerated process of nutrient enrichment. This paper presents the results of a two-year survey of the nutrients and phytoplankton at 3 stations in Junk Bay, Hong Kong, carried out from 1997 to 1998. The relationships between nitrogen, phosphorus, and their ratio, with phytoplankton abundance have been studied. The results show that the highest nitrogen concentration was in Station 2 which is close to a sewage input, whereas the highest phosphorus concentration was in Station 1 which is close to a landfill area. The mean N:P ratios at the three stations were between 8 and 14. The diatoms were the dominant group during most of the year but it seems that diatoms were more sensitive than dinoflagellates and other algal groups to the increase in nutrients.     

Changes in the growth rate of phytoplankton in local upwelling around the Izu Peninsula, Japan

The composition and temporal changes in phytoplankton populationswere evaluated in local upwelling off the Izu Peninsula. Japan.in May. 1982. Phytoplankton in the upwelled water was dominatedby diatoms and that in the surrounding water by various flagellatesand monads. Phytoplankton started logarithmic growth almostimmediately after subsurface nutrient-rich water was upwellinginto the euphotic zone and nutrients were depleted within afew days. Growth enhancement was most striking among diatoms.As a result >50% of the total phytoplankton biomass of cells>2 µm was from a centric diatom. Leptocylindrus danicus.The results confirmed many past observations of the dominanceof diatoms in upwelled water. Such dominance is explained bythe rapid growth of diatoms when nutrient concentrations areenhanced.     

Inputs of seabird guano alter microbial growth,community composition and the phytoplankton–bacterial interactions in a coastal system

Seabird guano enters coastal waters providing bioavailable substrates for microbial plankton, but their role in marine ecosystem functioning remains poorly understood. Two concentrations of the water soluble fraction (WSF) of gull guano were added to different natural microbial communities collected in surface waters from the Ría de Vigo (NW Spain) in spring, summer, and winter. Samples were incubated with or without antibiotics (to block bacterial activity) to test whether gull guano stimulated phytoplankton and bacterial growth, caused changes in taxonomic composition, and altered phytoplankton–bacteria interactions. Alteromonadales, Sphingobacteriales, Verrucomicrobia and diatoms were generally stimulated by guano. Chlorophyll a (Chl a) concentration and bacterial abundance significantly increased after additions independently of the initial ambient nutrient concentrations. Our study demonstrates, for the first time, that the addition of guano altered the phytoplankton–bacteria interaction index from neutral (i.e. phytoplankton growth was not affected by bacterial activity) to positive (i.e. phytoplankton growth was stimulated by bacterial activity) in the low-nutrient environment occurring in spring. In contrast, when environmental nutrient concentrations were high, the interaction index changed from positive to neutral after guano additions, suggesting the presence of some secondary metabolite in the guano that is needed for phytoplankton growth, which would otherwise be supplied by bacteria.     

Summer phytoplankton community structure and growth in a regional upwelling area off hachijo Island,Japan

Phytoplankton community structure both in terms of taxonomic composition and size distribution, and growth were examined in a regional upwelling which occurred in a Kuroshio region in summer. Organic carbon abundance of diatoms was markedly enhanced by the upwelling and they accounted for 87% of the total phytoplankton carbon. Nitzschia pungens Grunow was numerically most prominent accompanied by Chaetoceros and Rhizosolenia species. On the other hand, only a small increase was observed in phytoplankton other than diatoms, which consisted of unicellular cyanobacteria, coccolithophorids, gymnodinoids, and so called monads and flagellates. Division rate of diatoms from the upwelled water was twice that of the other forms. This difference in growth response among phytoplankton groups resulted in a shift of community structure to dominance of diatoms from that of the other forms. The time needed for this shift was estimated to be at least ≈ 3 days.     

Partitioning the Relative Importance of Phylogeny and Environmental Conditions on Phytoplankton Fatty Acids

Essential fatty acids (EFA), which are primarily generated by phytoplankton, limit growth and reproduction in diverse heterotrophs. The biochemical composition of phytoplankton is well-known to be governed both by phylogeny and environmental conditions. Nutrients, light, salinity, and temperature all affect both phytoplankton growth and fatty acid composition. However, the relative importance of taxonomy and environment on algal fatty acid content has yet to be comparatively quantified, thus inhibiting predictions of changes to phytoplankton food quality in response to global environmental change. We compiled 1145 published marine and freshwater phytoplankton fatty acid profiles, consisting of 208 species from six major taxonomic groups, cultured in a wide range of environmental conditions, and used a multivariate distance-based linear model to quantify the total variation explained by each variable. Our results show that taxonomic group accounts for 3-4 times more variation in phytoplankton fatty acids than the most important growth condition variables. The results underscore that environmental conditions clearly affect phytoplankton fatty acid profiles, but also show that conditions account for relatively low variation compared to phylogeny. This suggests that the underlying mechanism determining basal food quality in aquatic habitats is primarily phytoplankton community composition, and allows for prediction of environmental-scale EFA dynamics based on phytoplankton community data. We used the compiled dataset to calculate seasonal dynamics of long-chain EFA (LCEFA; ≥C₂₀ ɷ-3 and ɷ-6 polyunsaturated fatty acid) concentrations and ɷ-3:ɷ-6 EFA ratios in Lake Washington using a multi-decadal phytoplankton community time series. These analyses quantify temporal dynamics of algal-derived LCEFA and food quality in a freshwater ecosystem that has undergone large community changes as a result of shifting resource management practices, highlighting diatoms, cryptophytes and dinoflagellates as key sources of LCEFA. Moreover, the analyses indicate that future shifts towards cyanobacteria-dominated communities will result in lower LCEFA content in aquatic ecosystems.     

Phytoplankton–bacterioplankton interactions in a neotropical floodplain lake (Laguna Bufeos,Bolivia)

Laguna Bufeos is a floodplain lake of the river Ichilo, a tributary of the Amazon basin situated in Bolivia. Nutrient addition assays involving whole water (<200 μm) as well as fractionated water (<0.8 μm) treatments were carried out in incubation tubes to test whether bacterial growth is limited by the availability of inorganic nutrients and to test whether bacteria are able to utilize inorganic nutrients directly or are stimulated by inorganic nutrients through increased production of phytoplankton. The assays were carried out during two extreme hydrological conditions, the high-water and the low-water period. During the high-water period experiment, neither N or P limited bacterial growth rates. During the low-water period, bacterial growth was P limited. Bacterial growth was stimulated in the fractionated as well as in the whole water treatments, indicating that bacterial growth was directly stimulated by P. Bacterial growth corrected for grazing losses (determined by means of dilution experiments) was significantly higher in the fractionated water containing only bacteria when compared to the whole water containing also grazers and phytoplankton. This suggests that bacterial growth was suppressed by competition with phytoplankton rather than stimulated through the production of dissolved organic matter by phytoplankton.     

An ecosystem model of the phytoplankton competition in the East China Sea, as based on field experiments

An ecological dynamic model for the simulation of two pelagic phytoplankton groups is developed in this article. Model parameters were adjusted and validated based on the light-limited field culture experiments and the mesocosm experiments in the East China Sea (ECS). The calculation comparisons from the proposed model, along with field experiment observations, show that the model simulate the datasets very well, qualitatively and quantitatively. The parameters’ sensitivity analysis indicates that the competition between the diatoms and dinoflagellates is most sensitive to the photosynthetic process, followed by the exudation process of the phytoplankton, while the autolysis and respiration processes of phytoplankton and the grazing and exudation processes of zooplankton can also influence this competition to some extent. The sensitive parameters include: the photosynthetic optimal specific rate; the optimal irradiance and optimal temperature for phytoplankton growth; and the half-saturation constant for limiting nutrients, etc. Results of the sensitivity analysis also indicate that light, temperature and limiting nutrients are the controlling environmental factors for the competition between the diatoms and dinoflagellates in the ECS. In order to explore the effects of light and nutrients on the phytoplankton competition, simulations were carried out with varying light and nutrient conditions. Model simulations suggest that the diatoms favor higher irradiance, lower DIN/PO₄–P ratios, higher SiO₄–Si/DIN ratios and higher nutrient concentrations, as compared to the dinoflagellates. These results support the speculation that the increase in the DIN/PO₄−P ratio and the decrease in the SiO₄–Si/DIN ratio in the ECS may be responsible for the composition change in the functional Harmful Algal Bloom (HAB) groups from the diatom to the dinoflagellate communities over the last two decades. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: L. Naselli-Flores     

Phytoplankton and Nutrients in Goat Island Bay,New Zealand

A quantitative study of the phytoplankton and nutrients in Goat Island Bay, northern New Zealand, was carried out at two stations of depths 7 m and 20 m in 1966-69. There were significant differences in the concentrations of the phytoplankton at the two stations, the deeper station having, in general, higher concentrations than the shallower. Low phytoplankton standing crops were found in winter when the increased run-off from the land resulted in lower salinities, higher turbidity, and higher dissolved silicate levels. The spring growth of diatoms was dominated by small diatoms (Cylindrotheca closterium, Leptocylindrus danicus, Nitzschia pseudoseriata, Phaeodactylum tricornutum, and Rhizosolenia delicatula). Occasionally it was dominated by a population of large centric diatoms (Chaetoceros spp., Coscinodiscus spp., Thalassiosira spp.), but these appeared to be found in a separate water mass which entered the bay and displaced the resident water mass. A third water mass entered the bay in spring and was characterised by the coccolithophore Emiliana huxleyi and a lower temperature. During the summer diatoms dominated the phytoplankton population, but were replaced by dinoflagellates for a short period in autumn.     

Snapshot prediction of carbon productivity,carbon and protein content in a Southern Ocean diatom using FTIR spectroscopy

Diatoms, an important group of phytoplankton, bloom annually in the Southern Ocean, covering thousands of square kilometers and dominating the region''s phytoplankton communities. In their role as the major food source to marine grazers, diatoms supply carbon, nutrients and energy to the Southern Ocean food web. Prevailing environmental conditions influence diatom phenotypic traits (for example, photophysiology, macromolecular composition and morphology), which in turn affect the transfer of energy, carbon and nutrients to grazers and higher trophic levels, as well as oceanic biogeochemical cycles. The paucity of phenotypic data on Southern Ocean phytoplankton limits our understanding of the ecosystem and how it may respond to future environmental change. Here we used a novel approach to create a ‘snapshot'' of cell phenotype. Using mass spectrometry, we measured nitrogen (a proxy for protein), total carbon and carbon-13 enrichment (carbon productivity), then used this data to build spectroscopy-based predictive models. The models were used to provide phenotypic data for samples from a third sample set. Importantly, this approach enabled the first ever rate determination of carbon productivity from a single time point, circumventing the need for time-series measurements. This study showed that Chaetoceros simplex was less productive and had lower protein and carbon content during short-term periods of high salinity. Applying this new phenomics approach to natural phytoplankton samples could provide valuable insight into understanding phytoplankton productivity and function in the marine system.