Conversion of Amazon rainforest to agriculture alters community traits of methane‐cycling organisms

Land use change is one of the greatest environmental impacts worldwide, especially to tropical forests. The Amazon rainforest has been subject to particularly high rates of land use change, primarily to cattle pasture. A commonly observed response to cattle pasture establishment in the Amazon is the conversion of soil from a methane sink in rainforest, to a methane source in pasture. However, it is not known how the microorganisms that mediate methane flux are altered by land use change. Here, we use the deepest metagenomic sequencing of Amazonian soil to date to investigate differences in methane‐cycling microorganisms and their traits across rainforest and cattle pasture soils. We found that methane‐cycling microorganisms responded to land use change, with the strongest responses exhibited by methane‐consuming, rather than methane‐producing, microorganisms. These responses included a reduction in the relative abundance of methanotrophs and a significant decrease in the abundance of genes encoding particulate methane monooxygenase. We also observed compositional changes to methanotroph and methanogen communities as well as changes to methanotroph life history strategies. Our observations suggest that methane‐cycling microorganisms are vulnerable to land use change, and this vulnerability may underlie the response of methane flux to land use change in Amazon soils.     

Response of Free-Living Nitrogen-Fixing Microorganisms to Land Use Change in the Amazon Rainforest

The Amazon rainforest, the largest equatorial forest in the world, is being cleared for pasture and agricultural use at alarming rates. Tropical deforestation is known to cause alterations in microbial communities at taxonomic and phylogenetic levels, but it is unclear whether microbial functional groups are altered. We asked whether free-living nitrogen-fixing microorganisms (diazotrophs) respond to deforestation in the Amazon rainforest, using analysis of the marker gene nifH. Clone libraries were generated from soil samples collected from a primary forest, a 5-year-old pasture originally converted from primary forest, and a secondary forest established after pasture abandonment. Although diazotroph richness did not significantly change among the three plots, diazotroph community composition was altered with forest-to-pasture conversion, and phylogenetic similarity was higher among pasture communities than among those in forests. There was also 10-fold increase in nifH gene abundance following conversion from primary forest to pasture. Three environmental factors were associated with the observed changes: soil acidity, total N concentration, and C/N ratio. Our results suggest a partial restoration to initial levels of abundance and community structure of diazotrophs following pasture abandonment, with primary and secondary forests sharing similar communities. We postulate that the response of diazotrophs to land use change is a direct consequence of changes in plant communities, particularly the higher N demand of pasture plant communities for supporting aboveground plant growth.     

Land use change alters functional gene diversity,composition and abundance in Amazon forest soil microbial communities

Land use change in the Amazon rainforest alters the taxonomic structure of soil microbial communities, but whether it alters their functional gene composition is unknown. We used the highly parallel microarray technology GeoChip 4.0, which contains 83 992 probes specific for genes linked nutrient cycling and other processes, to evaluate how the diversity, abundance and similarity of the targeted genes responded to forest‐to‐pasture conversion. We also evaluated whether these parameters were reestablished with secondary forest growth. A spatially nested scheme was employed to sample a primary forest, two pastures (6 and 38 years old) and a secondary forest. Both pastures had significantly lower microbial functional genes richness and diversity when compared to the primary forest. Gene composition and turnover were also significantly modified with land use change. Edaphic traits associated with soil acidity, iron availability, soil texture and organic matter concentration were correlated with these gene changes. Although primary and secondary forests showed similar functional gene richness and diversity, there were differences in gene composition and turnover, suggesting that community recovery was not complete in the secondary forest. Gene association analysis revealed that response to ecosystem conversion varied significantly across functional gene groups, with genes linked to carbon and nitrogen cycling mostly altered. This study indicates that diversity and abundance of numerous environmentally important genes respond to forest‐to‐pasture conversion and hence have the potential to affect the related processes at an ecosystem scale.     

Land-use change in a tropical mountain rainforest region of southern Ecuador affects soil microorganisms and nutrient cycling

Over the past decades, the tropical mountain rainforest of southern Ecuador has been threatened by conversion to cattle pastures. Frequently, these pastures are invaded by bracken fern and abandoned when bracken becomes dominant. Changes in land-use (forest–pasture–abandoned pasture) can affect soil microorganisms and their physiological responses with respect to soil carbon and nutrient cycling. In situ investigations on litter decomposition and soil respiration as well as biogeochemical characterization of the soil were carried out to identify the driving factors behind. The conversion of forest to pasture induced a pronounced increase in CO₂–C effluxes to 12.2 Mg ha^?1 a^?1 which did not decrease after abandonment. Soil microbial activity and biomass showed a different pattern with lowest values at forest and abandoned pasture sites. With 3445 mg kg^?1 (0–5 cm) microbial biomass carbon (MBC by CFE-method), the active pasture had a more than three times higher value than forest and abandoned pasture, which was among the highest in tropical pasture soils. A shift in the microbial community structure (phospholipid fatty acid, PLFA) was also induced by the establishment of pasture land; the relative abundance of fungi and Gram-negative bacteria increased. PLFA fingerprints of the forest organic layer were more similar to pasture than to forest mineral soil. Chemical properties (pH value, exchangeable cations) were the main factors influencing the respective microbial structure. Bracken-invasion resulted in a decrease in the quantity and quality of above- and belowground biomass. The lower organic substance and nutrient availability induced a significant decline in microbial biomass and activity. After pasture abandonment, these differences in soil microbial function were not accompanied by pronounced shifts in the community structure and in soil pH as was shown for the conversion to pasture. A disconnection between microbial structure and function was identified. Similar soil CO₂–C effluxes between active and abandoned pasture sites might be explained by an underestimation of the effluxes from the active pasture site. All measurements were carried out between grass tussocks where fine-root density was about 2.6 times lower than below tussocks. Thus, lower proportions of root respiration were expected than below tussocks. Overall, soil microorganisms responded differently to changes in land-use from forest to pasture and from pasture to abandoned pasture resulting in pronounced changes of carbon and nutrient cycling and hence of ecosystem functioning.     

The effects of land use change on native dung beetle diversity and function in Australia's Wet Tropics

The impacts of land use change on biodiversity and ecosystem functions are variable, particularly in fragmented tropical rainforest systems with high diversity. Dung beetles (Scarabaeinae) are an ideal group to investigate the relationship between land use change, diversity and ecosystem function as they are easily surveyed, sensitive to habitat modification and perform many ecosystem functions. Although this relationship has been investigated for dung beetles in some tropical regions, there has been no study assessing how native dung beetles in Australia's tropical rainforests respond to deforestation, and what the corresponding consequences are for dung removal (a key ecosystem function fulfilled by dung beetles). In this study we investigated the relationship between dung beetle community attributes (determined through trapping) and function (using dung removal experiments that allowed different dung beetle functional groups to access the dung) in rainforest and cleared pasture in a tropical landscape in Australia's Wet Tropics. Species richness, abundance and biomass were higher in rainforest compared to adjacent pasture, and species composition between these land use types differed significantly. However, average body size and evenness in body size were higher in pasture than in rainforest. Dung removal was higher in rainforest than in pasture when both functional groups or tunnelers only could access the dung. Increased dung removal in the rainforest was explained by higher biodiversity and dominance of a small number of species with distinct body sizes, as dung removal was best predicted by the evenness in body size of the community. Our findings suggest that functional traits (including body size and dung relocation behaviour) present in a dung beetle community are key drivers of dung removal. Overall, our results show that deforestation has reduced native dung beetle diversity in Australian tropical landscapes, which negatively impacts on the capacity for dung removal by dung beetles in this region.     

The impact of aridification and vegetation type on changes in the community structure of methane-cycling microorganisms in Japanese wetland soils

Over the years, the wetlands covered by Sphagnum in Bibai, Japan have been turning into areas of aridity, resulting in an invasion of Sasa into the bogs. Yet little is known about the methane-cycling microorganisms in such environments. In this study, the methanotrophic, methanogenic, and archaeal community structures within these two types of wetland vegetation were studied by phylogenetic analysis targeting particulate methane monooxygenase (pmoA), methyl coenzyme M reductase (mcrA), and the archaeal 16S rRNA gene. The pmoA library indicated that Methylomonas and Methylocystis predominated in the Sphagnum-covered and Sasa-invaded areas, respectively. The mcrA and 16S rRNA libraries indicated that Methanoregula were abundant methanogens in the Sphagnum-covered area. In the Sasa-invaded area, by contrast, mcrA genes were not detected, and no 16S rRNA clones were affiliated with previously known methanogens. Because the Sasa-invaded area still produced methane, of the various uncultured populations detected, novel euryarchaeotal lineages are candidate methane producers.     

Effects of habitat transitions on rainforest bird communities across an anthropogenic landscape mosaic

We compared bird community responses to the habitat transitions of rainforest‐to‐pasture conversion, consequent habitat fragmentation, and post‐agricultural regeneration, across a landscape mosaic of about 600 km² in the eastern Australian subtropics. Birds were surveyed in seven habitats: continuous mature rainforest; two size classes of mature rainforest fragment (4–21 ha and 1–3 ha); regrowth forest patches dominated by a non‐native tree (2–20 ha, 30–50 years old); two types of isolated mature trees in pasture; and treeless pasture, with six sites per habitat. We compared the avifauna among habitats and among sites, at the levels of species, functional guilds, and community‐wide. Community‐wide species richness and abundance of birds in pasture sites were about one‐fifth and one‐third, respectively, of their values in mature rainforest (irrespective of patch size). Many measured attributes changed progressively across a gradient of increased habitat simplification. Rainforest specialists became less common and less diverse with decreased habitat patch size and vegetation maturity. However, even rainforest fragments of 1–3 ha supported about half of these species. Forest generalist species were largely insensitive to patch size and successional stage. Few species reached their greatest abundance in either small rainforest fragments or regrowth. All pastures were dominated by bird species whose typical native habitats were grassland, wetland, and open eucalypt forest, while pasture trees modestly enhanced local bird communities. Overall, even small scattered patches of mature and regrowth forest contributed substantial bird diversity to local landscapes. Therefore, maximizing the aggregate rainforest area is a useful regional conservation strategy.     

Using soil and litter arthropods to assess the state of rainforest restoration

Summary The present study investigated recolonization patterns of selected soil and litter arthropods following replanting of pasture with rainforest species in the Mary River catchment of eastern subtropical Australia. While extensive research has been conducted in rehabilitated mined sites in Australian dry sclerophyll forests, very little attention has been paid to rainforest restoration on previously pastoral land. We examined the utility of soil and litter arthropod groups for monitoring the progress of restoration, and the relationship between arthropod assemblage patterns and environmental factors potentially under the control of those doing the replanting. Leaf litter was extracted from 20 sites: five remnant rainforest, five pasture, and 10 sites that had been revegetated (from 1 to 12 years previously) with a diversity of indigenous species. Ants (identified to genus), centipedes, millipedes, isopods, amphipods and mites were enumerated and their assemblages described with multi- and univariate methods. Ant genera alone proved unable to distinguish pasture from rainforest, and mites (identified only to oribatid or non-oribatid) proved of limited use because these two groups were present in all samples in extremely high numbers that overwhelmed the contributions of other arthropod groups. However, a coarse taxonomic approach using five arthropod groups (ants, centipedes, millipedes, isopods, amphipods) clearly discriminated between pasture and rainforest, and also arranged the revegetated sites between these two extremes. Simple frequency scores based on the presence/absence of these arthropod groups in each of three replicate subplots were sufficient to achieve this separation of site types. Habitats created by close planting of trees and mulching may accelerate invertebrate colonization and, thus, promote the rapid establishment of processes and functions characteristic of developing rainforests.     

Spatial patterns and recent trends in the climate of tropical rainforest regions

We present an analysis of the mean climate and climatic trends of tropical rainforest regions over the period 1960-1998, with the aid of explicit maps of forest cover and climatological databases. Until the mid-1970s most regions showed little trend in temperature, and the western Amazon experienced a net cooling probably associated with an interdecadal oscillation. Since the mid-1970s, all tropical rainforest regions have experienced a strong warming at a mean rate of 0.26 +/- 0.05 degrees C per decade, in synchrony with a global rise in temperature that has been attributed to the anthropogenic greenhouse effect. Over the study period, precipitation appears to have declined in tropical rainforest regions at a rate of 1.0 +/- 0.8% per decade (p < 5%), declining sharply in northern tropical Africa (at 3-4% per decade), declining marginally in tropical Asia and showing no significant trend in Amazonia. There is no evidence so far of a decline in precipitation in eastern Amazonia, a region thought vulnerable to climate-change-induced drying. The strong drying trend in Africa suggests that this should be a priority study region for understanding the impact of drought on tropical rainforests. We develop and use a dry-season index to study variations in the length and intensity of the dry season. Only African and Indian tropical rainforests appear to have seen a significant increase in dry-season intensity. In terms of interannual variability, the El Niño-Southern Oscillation (ENSO) is the primary driver of temperature variations across the tropics and of precipitation fluctuations for large areas of the Americas and southeast Asia. The relation between ENSO and tropical African precipitation appears less direct.     

Distributional patterns of herpetofauna in monsoon rainforests of the Northern Territory,Australia

Abstract The herpetofauna of 50 monsoon rainforest patches in the Top End of the Northern Territory was surveyed during the dry season of 1990. This fauna contains few obligate monsoon rainforest species, many species which favour this habitat as part of a broad habitat range and a large number of species (indeed most of the regional species pool) that occasionally occur within monsoon rainforests. The taxonomic composition of species favouring monsoon rainforests is a non-random selection from the regional pool, with relatively few species in the families Agamidae and Scincidae occurring commonly in monsoon rainforests. Environmental variation among the rainforest patches sampled was portrayed by ordination, with the first axis corresponding to an environmental gradient from coastal sites to inland rocky rainforests and the second a gradient from relatively dry thickets to tall dense rainforests close to water. The distributions of herpetofauna species were depicted on this ordination space. Most frog species occurred in relatively wet rainforests and most gecko species were relatively restricted to drier rainforests. A substantial component of the herpetofauna was associated with rainforests on rocky substrate. In contrast to this relatively good association with these defined gradients, there was little apparent influence of patch size or level of disturbance on the distribution of individual species of herpetofauna. Sampling month was related to the abundance of many species, with many frog species and some snake and skink species declining (but some skink and one frog species increasing) in abundance in rainforest patches during the late dry season. This seasonal change in abundance is not due to movements from rainforest patches to adjacent vegetation types (or vice versa) but rather to total landscape (cross-habitat) changes in abundance (or detectability). The species composition of patches tended to be idiosyncratic, with substantial variability in composition, even between nearby patches of like environment. Hence it is not possible to nominate a representative rainforest herpetofauna, and indeed a classification of all quadrats (including those from rainforests, rainforest edges and adjacent habitats) based on herpetofauna species composition grouped many non-rainforest quadrats with those from rainforests. There was no rainforest edge herpetofauna assemblage. The herpetofauna from rainforests of the Northern Territory was similar to but somewhat richer than that recorded from the even more attenuated monsoon rainforest area of the Kimberley of northwestern Australia, but shared relatively few species with a sampling from monsoon rainforests from western Cape York. Frog species were more likely to be recorded across these three regions than were snake species. The number of herpetofaunal species per patch was low compared to tropical forests in northeastern Australia, Asia and central America. The long dry season of the Top End may contribute to this impoverishment. However, the small total area of monsoon rainforests in this region, the current scattered network of patches and historical fluctuations in extent and distribution of this habitat are probably at least as important.     

不同土地利用方式土壤氨氧化微生物和反硝化微生物时空分布特征

研究不同土地利用方式下氮循环相关微生物在不同土壤剖面的分布,可为认识和理解土壤氮转化过程提供科学依据。土壤氨氧化微生物和反硝化微生物在调节氮肥利用率、硝态氮淋溶和氧化亚氮(N₂O)排放等方面有着重要作用。以北京郊区农田和林地两种土地利用方式为研究对象,分析土壤氨氧化潜势和亚硝酸盐氧化潜势在0—100 cm土壤剖面上的季节分布(春季和秋季),并通过实时荧光定量PCR方法表征土壤氨氧化和反硝化微生物的时空分布特征。结果表明,农田土壤氨氧化潜势、亚硝酸盐氧化潜势、氨氧化微生物和反硝化微生物丰度均显著高于林地土壤,且随土壤深度增加而显著降低。除氨氧化古菌amoA基因丰度在不同季节间无显著差异外,春季土壤氨氧化细菌(amoA基因)、反硝化微生物nirS、nirK和典型nosZ I基因的丰度均显著高于秋季。土壤有机质、总氮、NH~+₄-N、NO~-₃-N含量与氨氧化微生物和反硝化微生物的功能基因丰度显著相关。综上,不同土地利用方式下土壤氮循环相关微生物的丰度与土壤氮素的可利用性和转化过程紧密相关,研究结果对土壤氮素利用和养分管理提供...     

Rainforest litter invertebrates decimated by high severity burns during Australia's gigafires

Climate change is increasing the frequency of extreme fires. In 2019–2020, extreme fires burned 97 000 km² of native vegetation in south-eastern Australia, affecting many areas of rainforest, which has historically burned less frequently. One year post-fires, we surveyed litter macroinvertebrates in 52 temperate rainforest sites. Sites had experienced increasing levels of fire severity (unburnt, medium severity and high severity). We asked how fire severity affected: (1) litter macroinvertebrate habitats; (2) the abundance of litter macroinvertebrate taxa per unit area; and (3) abundance relative to litter habitat (volumetric density). We also estimated the loss of litter macroinvertebrates across rainforests in the study region. High severity burns supported only a fifth of the litter volume and canopy cover as unburnt sites, lower soil moisture and higher herb cover. Medium burns were intermediate. Macroinvertebrate abundance declined with burn severity: high severity burns supported only 26% of the abundance in unburnt sites; medium severity burns supported 80% of that in unburnt sites. Patterns were similar for all taxa, with millipedes declining most. High severity fires resulted in up to 1.90 million fewer macroinvertebrates per hectare; 0.53 million fewer per hectare of medium burn rainforest. Across the study region, we estimate that 60 billion fewer litter macroinvertebrates persisted in temperate rainforests alone. Volumetric densities of many litter macroinvertebrate taxa in high severity burns were marginally higher than in unburnt sites, suggesting nutrients may be more available post-fire, or that persisting individuals become concentrated in the leaf litter. For less desiccation-tolerant groups (e.g., amphipods), density declines with increasing severity may reflect the combined impact of low soil moisture and reduced litter cover. Many taxa persisted following high severity fires, but declines were substantial, and taxa differed in their vulnerability. Longer-term monitoring is required to understand the recovery trajectory and impacts on ecological function.     

Predicting Greenhouse Gas Emissions and Soil Carbon from Changing Pasture to an Energy Crop

Bioenergy related land use change would likely alter biogeochemical cycles and global greenhouse gas budgets. Energy cane (Saccharum officinarum L.) is a sugarcane variety and an emerging biofuel feedstock for cellulosic bio-ethanol production. It has potential for high yields and can be grown on marginal land, which minimizes competition with grain and vegetable production. The DayCent biogeochemical model was parameterized to infer potential yields of energy cane and how changing land from grazed pasture to energy cane would affect greenhouse gas (CO₂, CH₄ and N₂O) fluxes and soil C pools. The model was used to simulate energy cane production on two soil types in central Florida, nutrient poor Spodosols and organic Histosols. Energy cane was productive on both soil types (yielding 46–76 Mg dry mass⋅ha⁻¹). Yields were maintained through three annual cropping cycles on Histosols but declined with each harvest on Spodosols. Overall, converting pasture to energy cane created a sink for GHGs on Spodosols and reduced the size of the GHG source on Histosols. This change was driven on both soil types by eliminating CH₄ emissions from cattle and by the large increase in C uptake by greater biomass production in energy cane relative to pasture. However, the change from pasture to energy cane caused Histosols to lose 4493 g CO₂ eq⋅m⁻² over 15 years of energy cane production. Cultivation of energy cane on former pasture on Spodosol soils in the southeast US has the potential for high biomass yield and the mitigation of GHG emissions.     

Increasing arboreality with altitude: a novel biogeographic dimension

Biodiversity is spatially organized by climatic gradients across elevation and latitude. But do other gradients exist that might drive biogeographic patterns? Here, we show that rainforest''s vertical strata provide climatic gradients much steeper than those offered by elevation and latitude, and biodiversity of arboreal species is organized along this gradient. In Philippine and Singaporean rainforests, we demonstrate that rainforest frogs tend to shift up in the rainforest strata as altitude increases. Moreover, a Philippine-wide dataset of frog distributions shows that frog assemblages become increasingly arboreal at higher elevations. Thus, increased arboreality with elevation at broad biogeographic scales mirrors patterns we observed at local scales. Our proposed ‘arboreality hypothesis’ suggests that the ability to exploit arboreal habitats confers the potential for larger geographical distributions because species can shift their location in the rainforest strata to compensate for shifts in temperature associated with elevation and latitude. This novel finding may help explain patterns of species richness and abundance wherever vegetation produces a vertical microclimatic gradient. Our results further suggest that global warming will ‘flatten’ the biodiversity in rainforests by pushing arboreal species towards the cooler and wetter ground. This ‘flattening’ could potentially have serious impacts on forest functioning and species survival.     

Asynchronous Response of Tropical Forest Leaf Phenology to Seasonal and El Ni?o-Driven Drought

The Hawaiian Islands are an ideal location to study the response of tropical forests to climate variability because of their extreme isolation in the middle of the Pacific, which makes them especially sensitive to El Niño-Southern Oscillation (ENSO). Most research examining the response of tropical forests to drought or El Niño have focused on rainforests, however, tropical dry forests cover a large area of the tropics and may respond very differently than rainforests. We use satellite-derived Normalized Difference Vegetation Index (NDVI) from February 2000-February 2009 to show that rainforests and dry forests in the Hawaiian Islands exhibit asynchronous responses in leaf phenology to seasonal and El Niño-driven drought. Dry forest NDVI was more tightly coupled with precipitation compared to rainforest NDVI. Rainforest cloud frequency was negatively correlated with the degree of asynchronicity (Δ_NDVI) between forest types, most strongly at a 1-month lag. Rainforest green-up and dry forest brown-down was particularly apparent during the 2002–003 El Niño. The spatial pattern of NDVI response to the NINO 3.4 Sea Surface Temperature (SST) index during 2002–2003 showed that the leeward side exhibited significant negative correlations to increased SSTs, whereas the windward side exhibited significant positive correlations to increased SSTs, most evident at an 8 to 9-month lag. This study demonstrates that different tropical forest types exhibit asynchronous responses to seasonal and El Niño-driven drought, and suggests that mechanisms controlling dry forest leaf phenology are related to water-limitation, whereas rainforests are more light-limited.     

Dynamics of Aboveground and Soil Carbon and Nitrogen Stocks and Cycling of Available Nitrogen along a Land-use Gradient in Rondônia,Brazil

High rates of deforestation in the Brazilian Amazon have the potential to alter the storage and cycling of carbon (C) and nitrogen (N) across this region. To investigate the impacts of deforestation, we quantified total aboveground biomass (TAGB), aboveground and soil pools of C and N, and soil N availability along a land-use gradient in Rondônia, Brazil, that included standing primary forest, slashed primary and secondary forest, shifting cultivation, and pasture sites. TAGB decreased substantially with increasing land use, ranging from 311 and 399 Mg ha^–1 (primary forests) to 63 Mg ha^–1 (pasture). Aboveground C and N pools declined in patterns and magnitudes similar to those of TAGB. Unlike aboveground pools, soil C and N concentrations and pools did not show consistent declines in response to land use. Instead, C and N concentrations were strongly related to percent clay content of soils. Concentrations of NO₃-N and NH₄-N generally increased in soils following slash-and-burn events along the land-use gradient and decreased with increasing land use. Increasing land use resulted in marked declines in NO₃-N pools relative to NH₄-N pools. Rates of net nitrification and N-mineralization were also generally higher in postfire treatments relative to prefire treatments along the land-use gradient and declined with increasing land use. Results demonstrate the linked responses of aboveground C and N pools and soil N availability to land use in the Brazilian Amazon; steady reductions in aboveground pools along the land-use gradient were accompanied by declines in inorganic soil N pools and transformation rates.     

Pasture degradation in the central Amazon: linking changes in carbon and nutrient cycling with remote sensing

The majority of deforested land in the Amazon Basin has become cattle pasture, making forest‐to‐pasture conversion an important contributor to the carbon (C) and climate dynamics of the region. However, our understanding of biogeochemical dynamics in pasturelands remains poor, especially when attempting to scale up predictions of C cycle changes. A wide range of pasture ages, soil types, management strategies, and climates make remote sensing the only realistic means to regionalize our understanding of pasture biogeochemistry and C cycling over such an enormous geographic area. However, the use of remote sensing has been impeded by a lack of effective links between variables that can be observed from satellites (e.g. live and senescent biomass) and variables that cannot be observed, but which may drive key changes in C storage and trace gas fluxes (e.g. soil nutrient status). We studied patterns in canopy biophysical–biochemical properties and soil biogeochemical processes along pasture age gradients on two important soil types in the central Amazon. Our goals were to (1) improve our understanding of the plot‐scale biogeochemical dynamics of this land‐use change, (2) evaluate the effects of pasture development on two contrasting soil types (clayey Oxisols and sandy Entisols), and (3) attempt to use remotely sensed variables to scale up the site‐specific variability in biogeochemical conditions of pasturelands. The biogeochemical analyses showed that (1) aboveground and soil C stocks decreased with pasture age on both clayey and sandy soils, (2) declines in plant biomass were well correlated with declines in soil C and with available phosphorus (P) and calcium (Ca), and (3) despite low initial values for total and available soil P, ecosystem P stocks declined further with pasture age, as did a number of other nutrients. Spectral mixture analysis of Landsat imagery provided estimates of photosynthetic vegetation (PV) and non‐photosynthetic vegetation (NPV) that were highly correlated with field measurements of these variables and plant biomass. In turn, the remotely sensed sum PV+NPV was well correlated with the changes in soil organic carbon and nitrogen, and available P and Ca. These results suggest that remote sensing can be an excellent indicator of not only pasture area, but of pasture condition and C storage, thereby greatly improving regional estimates of the environmental consequences of such land‐use change.     

Rainforest seed rain into abandoned tropical Australian pasture is dependent on adjacent rainforest structure and extent

It is well known that the recovery of abandoned tropical pastures to secondary rainforest benefits from the arrival of seeds from adjacent rainforest patches. Less is known, however, about how the structural attributes of adjacent rainforest (e.g. tree density, canopy cover and tree height) impact seed rain patterns into abandoned pastures. Between 2011 and 2013, we used seed traps and ground seed surveys to track the richness and abundance of rainforest seeds entering abandoned pastures in Australia's wet tropics. We also tested how seed rain diversity is related to the distance from forest, the proportion of forest cover in the landscape and several structural attributes of adjacent forest patches, specifically average tree height, canopy cover, tree species richness and density. Almost no seeds were captured in elevated pasture seed traps, even near forest remnants. Abundant forest seeds were found in ground surveys but only within 10 m of forest edges. In ground surveys, seeds from wind‐dispersed species were more abundant, but less species rich, than animal‐dispersed species. A survey of pasture seedling recruits suggested that some forest seeds must be dispersing more than 10 m into pasture at very low frequencies, but only a few species are establishing there. Recruits were predominantly animal‐dispersed not wind‐dispersed species. In addition to distance from forest and the proportion of forest within a 100‐ to 200‐m radius of sampling sites, the richness and density of adjacent forest trees were the most important factors for explaining the probability of seed occurrence in abandoned pastures. Results suggest that without some restoration assistance, the recovery of abandoned pastures into secondary rainforest in Australia's tropical rainforests will likely be limited, at least in part, by a very low rate of seed dispersal away from forest edges and by the diversity and density of trees in adjacent remnant forests.     

Are Dung Beetles Driving Dung-Fly Abundance in Traditional Agricultural Areas in the Amazon?

We evaluated the effects of different land-use systems on the ability of dung beetles to control the population of detritus-feeding flies. We tested the hypotheses that intensification of land use will reduce dung beetles richness, abundance and biomass and, consequently, their dung burial ability, affecting the interaction between dung beetles and flies and reducing its effectiveness as a natural biological control. In the Brazilian Amazon we sampled dung beetles, fly larvae and adults; and recorded the rate of dung removal by dung beetles across a gradient of land-use intensity from primary forest, secondary forest, agroforestry, agriculture to pasture. Our results provide evidence that land-use intensification results in a reduction of the richness, abundance and biomass of dung beetles, and this in turn results in lower rates of dung removal in the most simplified systems. We found no significant differences in the abundance of fly larvae between the different systems of land use. However, the number of adult flies differed significantly between land-use systems, presenting higher abundance in those sites with greater intensity of use (pasture and agriculture) and a lower abundance of adult flies in forested systems (primary and secondary forests, and agroforestry). Information-theoretic model selection based on AICc revealed strong support for the influence of land-use systems, dung removal rates and dung beetle abundance, biomass and richness on adult dung-fly abundance. Our results also reveal that dung beetles are not solely responsible for fly control and that other factors linked to land use are influencing the populations of these detritus-feeding insects.     

Livestock exclusion reduces the spillover effects of pastoral agriculture on soil bacterial communities in adjacent forest fragments

Forest-to-pasture conversion is known to cause global losses in plant and animal diversity, yet impacts of livestock management after such conversion on vital microbial communities in adjoining natural ecosystems remain poorly understood. We examined how pastoral land management practices impact soil microorganisms in adjacent native forest fragments, by comparing bacterial communities sampled along 21 transects bisecting pasture–forest boundaries. Our results revealed greater bacterial taxon richness in grazed pasture soils and the reduced dispersal of pasture-associated taxa into adjacent forest soils when land uses were separated by a boundary fence. Relative abundance distributions of forest-associated taxa (i.e., Proteobacteria and Nitrospirae) and a pasture-associated taxon (i.e., Firmicutes) also suggest a greater impact of pastoral land uses on forest fragment soil bacterial communities when no fence is present. Bacterial community richness and composition were most related to changes in soil physicochemical variables commonly associated with agricultural fertilization, including concentrations of Olsen P, total P, total Cd, delta ¹⁵N and the ratio of C:P and N:P. Overall, our findings demonstrate clear, and potentially detrimental effects of agricultural disturbance on bacterial communities in forest soils adjacent to pastoral land. We provide evidence that simple land management decisions, such as livestock exclusion, can mitigate the effects of agriculture on adjacent soil microbial communities.