Morphometrics within dog breeds are highly reproducible and dispute Rensch’s rule

Using 27 body measurements, we have identified 13 breed-defining metrics for 109 of 159 domestic dog breeds, most of which are recognized by the American Kennel Club (AKC). The data set included 1,155 dogs at least 1 year old (average 5.4 years), and for 53 breed populations, complete measurement data were collected from at least three males and three females. We demonstrate, first, that AKC breed standards are rigorously adhered to for most domestic breeds with little variation observed within breeds. Second, Rensch’s rule, which describes a scaling among taxa such that sexual dimorphism is greater among larger species if males are the larger sex, with less pronounced differences in male versus female body size in smaller species, is not maintained in domestic dog breeds because the proportional size difference between males and females of small and large breeds is essentially the same. Finally, principal components (PCs) analysis describes both the overall body size (PC1) and the shape (length versus width) of the skeleton (PC2). That the integrity of the data set is sufficiently rich to discern PCs has strong implications for mapping studies, suggesting that individual measurements may not be needed for genetic studies of morphologic traits, particularly in the case of breed-defining traits that are typically under strong selection. Rather, phenotypes derived from data sets such as these, collected at a fraction of the effort and cost, may be used to direct whole-genome association studies aimed at understanding the genetic basis of fixed morphologic phenotypes defining distinct dog breeds.

     

Patterns of sexual size dimorphism in cattle breeds support Rensch’s rule

Rensch’s rule describes the pattern of sexual size dimorphism (SSD) claiming that in taxa where males are the larger sex, larger species generally exhibit higher male to female body size ratios. Agreement with Rensch’s rule is manifested by the slope of the allometric relationship between male and female body size exceeding one. In this paper we have tested the hypothesis that recent rapid evolutionary changes of body size accompanying domestication process and morphological radiation of domestic breeds follow Rensch’s rule. We have analyzed literature data on adult body size of males and females in domestic cows, yaks, buffaloes and other bovines (315, 12, 24 and 2 breeds, respectively) and compared it with SSD in 18 wild species/subspecies of the subfamily Bovinae. Male to female body mass ratio in domestic cows (1.48) was fairly comparable to that found in other species of domestic and wild bovines except domestic buffaloes (1.19). In cows we have demonstrated clear positive allometry of male to female body mass ratio (slope 1.21) predicted by Rensch’s rule, however, no such clear relationship was found when body mass was replaced by shoulder height. These findings are in agreement with those we have previously reported in other livestock species, goats and sheep.     

A test of Rensch’s rule in dwarf chameleons (Bradypodion spp.), a group with female-biased sexual size dimorphism

Rensch’s rule describes a pattern of allometry in sexual size dimorphism (SSD): when males are the larger sex (male-biased SSD), SSD increases with increasing body size, and when females are the larger sex (female-biased SSD), SSD decreases with increasing body size. While this expectation generally holds for taxa with male-biased or mixed SSD, examples of allometry for SSD consistent with Rensch’s rule in groups with primarily female-biased SSD are remarkably rare. Here, I show that the majority of dwarf chameleons (Bradypodion spp.) have female-biased SSD. In accordance with Rensch’s rule, the group exhibits an allometric slope of log(female size) on log(male size) less than one, although statistical significance is dependent on the phylogenetic comparative method used. In this system, this pattern is likely due to natural selection on both male and female body size, combined with fecundity selection on female body size. In addition to quantifying SSD and testing Rensch’s rule in dwarf chameleons, I discuss reasons why Rensch’s rule may only rarely apply to taxa with female-biased SSD.     

Phylogenetic Patterns of Sexual Size Dimorphism in Turtles and Their Implications for Rensch’s Rule

Sexual size dimorphism (SSD) is widespread in nature and may result from selection operating differentially on males and females. Rensch’s rule, the increase of SSD with body size in male-biased-SSD species (or decrease in female-biased-SSD species), is documented in invertebrates and vertebrates. In turtles, evidence for Rensch’s rule is inconclusive and thus the forces underlying body size evolution remain obscure. Using a phylogenetic approach on 138 turtle species from 9 families, we found that turtles overall and three families follow Rensch’s rule, five families display isometry of SSD with body size, while Podocnemididae potentially follows a pattern opposite to Rensch’s rule. Furthermore, male size evolves at faster rates than female size. Female-biased-SSD appears ancestral in turtles while male-biased-SSD evolved in every polytypic family at least once. Body size follows an Ornstein–Uhlenbeck evolutionary model in both sexes and SSD types, ruling out drift as a driving process. We explored whether habitat type or sex determination might be general drivers of turtle body size evolution using a phylogenetic context. We found that males are proportionally larger in terrestrial habitats and smaller in more aquatic habitats, while the sex-determining mechanism had no influence on body size evolution. Together, our data indicate that Rensch’s rule is not ubiquitous across vertebrates, but rather is prevalent in some lineages and not driven by a single force. Instead, our findings are consistent with the hypotheses that fecundity-selection might operate on females and ecological-selection on males; and that SSD and sex-determining mechanism evolve independently in these long-lived vertebrates.     

Trinucleotide’s quadruplet symmetries and natural symmetry law of DNA creation ensuing Chargaff’s second parity rule

For almost 50 years the conclusive explanation of Chargaff’s second parity rule (CSPR), the equality of frequencies of nucleotides A=T and C=G or the equality of direct and reverse complement trinucleotides in the same DNA strand, has not been determined yet. Here, we relate CSPR to the interstrand mirror symmetry in 20 symbolic quadruplets of trinucleotides (direct, reverse complement, complement, and reverse) mapped to double-stranded genome. The symmetries of Q-box corresponding to quadruplets can be obtained as a consequence of Watson–Crick base pairing and CSPR together. Alternatively, assuming Natural symmetry law for DNA creation that each trinucleotide in one strand of DNA must simultaneously appear also in the opposite strand automatically leads to Q-box direct-reverse mirror symmetry which in conjunction with Watson–Crick base pairing generates CSPR. We demonstrate quadruplet’s symmetries in chromosomes of wide range of organisms, from Escherichia coli to Neanderthal and human genomes, introducing novel quadruplet-frequency histograms and 3D-diagrams with combined interstrand frequencies. These “landscapes” are mutually similar in all mammals, including extinct Neanderthals, and somewhat different in most of older species. In human chromosomes 1–12, and X, Y the “landscapes” are almost identical and slightly different in the remaining smaller and telocentric chromosomes. Quadruplet frequencies could provide a new robust tool for characterization and classification of genomes and their evolutionary trajectories.     

Compensatory nature of Chargaff’s second parity rule

The second parity rule of Chargaff (A≈T and G≈C within one strand) holds all over the living world with minor exceptions. It is maintained with higher accuracy for long sequences. The question addressed in the article is how different sequence types, with different biases from the parity, contribute to the general effect. It appears that the sequence segments with biases of opposite sign are intermingled, so that with sufficient sequence lengths the parity is established. The parity rule seems to be a cumulative result of a number of independent processes in the genome evolution, with the parity as their intrinsic property. Symmetrical appearance of simple repeats and of Alu sequences in the human DNA strands, and other contributions to the Chargaff parity II rule are discussed.     

Allometry for Sexual Size Dimorphism in Stoneflies Defies the Rensch’s Rule

The Rensch’s rule predicts that male-biased sexual size dimorphism (SSD) increases with body size, while female-biased SSD (FBSSD) decreases. In insects, many groups follow this rule, but the evidence suggests that it is taxon dependent and that the inverse of the rule can occur in species with FBSSD. Therefore, we conducted this study with Gripopterygidae stoneflies (Plecoptera) to describe their pattern of SSD and determine if they follow the Rensch’s rule. Our data suggest that stoneflies exhibit FBSSD and do not follow the rule, but a reverse pattern. Our results corroborate other studies that suggest that the Rensch’s rule is taxon based and that groups with FBSSD usually fail to obey the rule.     

Coming to America: Acclimation in macaque body structures and Bergmann’s rule

I analyzed somatometric measurements from subsets of the Texas and Oregon transplanted troops of Japanese macaques(Macaca fuscata) to reveal secular changes in body size and shape. Body weights of the Texas population (N = 59) are lower than those of the Oregon population(N = 49) and the founding population from Arashiyama. The adult weights of the Oregon population are significantly higher than the founding population from Mihara. There are significant differences in adult circumferential measures and in skinfolds, which are correlated with the increased weight of the Oregon macaques. The adult Texas macaques have longer limb segments in comparison with the adult Oregon troop members, while the latter have significantly longer heads and trunks. Examination of the developing morphological trends through regression analyses on the complete sample suggests distinctive growth patterns for each population. Members of the Texas population start with smaller initial measurements but hold a steeper growth pattern for limb segments, while the Oregon macaques start larger in most measures and show lower growth rates. I argue that these differences in both somatometry and growth patterns are related to the differing climatic conditions under which the translocated macaques have lived. This set of analyses supports the basic arguments for Bergmann’s rule and Allen’s rule.     

Thermal fluctuation within nests and predicted sex ratio of Morelet’s Crocodile

Understanding the interplay between thermal variations and sex ratio in reptiles with temperature-dependent sex determination is the first step for developing long-term conservation strategies. In case of crocodilians, the information is fragmentary and insufficient for establishing a general framework to consider how thermal fluctuation influence sex determination under natural conditions. The main goal of this study was to analyze thermal variation in nests of Crocodylus moreletii and to discuss the potential implications for predicting offspring sex ratio. The study was carried out at the Centro de Estudios Tecnológicos del Mar N° 2 and at the Sistemas Productivos Cocodrilo, Campeche, Mexico. Data was collected in the nesting season of Morelet’s Crocodiles during three consecutive seasons (2007-2009). Thermal fluctuations for multiple areas of the nest chamber were registered by data loggers. We calculate the constant temperature equivalent based on thermal profiles among nests to assess whether there are differences between the nest temperature and its equivalent to constant temperature. We observed that mean nest temperature was only different among nests, while daily thermal fluctuations vary depending on the depth position within the nest chamber, years and nests. The constant temperature equivalent was different among and within nests, but not among survey years. We observed differences between constant temperature equivalent and mean nest temperature both at the top and in the middle of the nest cavities, but were not significantly different at the bottom of nest cavities. Our results enable examine and discuss the relevance of daily thermal fluctuations to predict sex ratio of the Morelet’s Crocodile.     

Shallow water ray-finned marine fishes follow Bergmann’s rule

Understanding the interspecific variation in body size across macroclimatic gradients has been of paramount importance to naturalists and biogeographers. Bergmann’s rule, which describes a trend of increasing body size polewards, is arguably the best-known ecogeographical rule in terrestrial environments but remains largely unexplored in the marine realm. In this study we tested Bergmann's rule in marine ray-finned fishes (Pisces, Actinopterygii), analyzing the relationship between body size and latitude in 5662 species. To examine possible underlying mechanisms, we adopted a cross-species approach to evaluate the association of body size with four predictors: Sea Surface Temperature, Net Primary Productivity, Salinity, and Human impact. We analyzed the relationships between body size and environmental and anthropogenic variables building mixed linear models, which considered the taxonomic structure in the data. We conducted complementary analyses dividing the data into five latitudinal bands. Actinopterygii showed a clear Bergmannian pattern, with the largest species observed in temperate regions, being the first global analysis on ray-finned fishes showing a pattern consistent with Bergmann’s rule. Sea Surface Temperature and Net Primary Productivity were the best predictors, in accordance with the time to sexual maturity and resource availability hypotheses. Our analyses based on latitudinal bands showed a differential response of body size to the environment, with temperature, salinity and human impact more strongly associated with size variation at cold environments. These results agree with previous studies on Bergmann’s rule for terrestrial ectothermic, freshwater and marine fishes. Our findings suggest that temperature rise in the ocean and growing human impact may have effects on the distribution of body size, thus altering ecosystem functioning. Fundamental differences often assumed to exist between marine and terrestrial systems are not so evidently reflected in the emergence of large-scale body size gradients.     

Acid-mediated Lipinski’s second rule: application to drug design and targeting in cancer

With a predicted 382.4 per 100,000 people expected to suffer from some form of malignant neoplasm by 2015, and a current death toll of 1 out of 8 deaths worldwide, improving treatment and/or drug design is an essential focus of cancer research. Multi-drug resistance is the leading cause of chemotherapeutic failure, and delivery of anticancer drugs to the inside of cancerous cells is another major challenge. Fifteen years ago, in a completely different field in which improving drug delivery is the objective, the bioavailability of oral compounds, Christopher Lipinski formulated some rules that are still used by the pharmaceutical industry as rules of thumb to improve drug delivery to their target. Although Lipinski’s rules were not formulated to improve delivery of antineoplastic drugs to the inside of cancer cells, it is interesting to note that the problems are similar. On the basis of the strong similarity between the fields, we discuss how they can be connected and how new drug targets can be defined in cancer.     

Ruppell’s fox movement and spatial behavior are influenced by topography and human activity

Biodiversity and Conservation - Global climatic processes have driven an expansion of arid environments, as well as the human populations that depend on these biomes. Human habitation can influence...     

Maltotriose transport and utilization in Baker’s and Brewer’s yeast

Maltotriose is metabolized by baker’s and brewer’s yeast only oxidatively, with a respiratory quotient of 1.0, the being, depending on the strain used, 0–11, as compared with of 6–42μL CO₂ per h per mg dry substance. The transport appeared to proceed by facilitated diffusion (no effects of NaF, iodoacetamide and 3-chlorophenylhydrazonomalononitrile) with a K_T of more than 50mm and was inhibited by maltose > maltotriose > methyl-α-D-glucoside > maltotetraose >D-fruetose >D-glucose. The transport was present constitutively in bothSaccharomyces cerevisiae (baker’s yeast) and inS. uvarum (brewer’s yeast) and it was not significantly stimulated by preincubation with glucose or maltose. The pH optimum was 4.5–5.5, the temperature dependence yielded an activation energy of 26 kJ/mol.