<Emphasis Type="Italic">Chitinophaga salinisoli</Emphasis> sp. nov., isolated from saline soil

A novel aerobic bacterium, designated strain LAM9153^T, was isolated from a saline soil sample collected from Lingxian County, Shandong Province, China. Cells of strain LAM9153^T were observed to be Gram-stain negative, non-motile, non-spore-forming and rod-shaped. The new isolate grew optimally at 30–35 °C, pH 7.0 and 0.5% of NaCl concentration (w/v). According to the phylogenetic analysis based on the 16S rRNA gene sequence, strain LAM9153^T shares high similarity with Chitinophaga terrae Gsoil 238^T (96.9%) and Chitinophaga niabensis JS 13-10^T (95.9%), forming a subcluster with C. terrae Gsoil 238^T, Chitinophaga cymbidii R156-2^T, C. niabensis JS 13-10^T and Chitinophaga soli Gsoil 219^T in the phylogenetic tree. The major cellular fatty acids (> 10%) were identified as iso-C_15:0, iso-C_17:0 3-OH and summed features 3 (C_16:1 ω6c and/or C_16:1 ω7c). The predominant respiratory quinone was identified as menaquinone MK-7. The polar lipids consisted of phosphatidylethanolamine, aminophospholipid, three unidentified aminolipids and five unidentified lipids. The genomic DNA G+C content was determined to be 53.2 ± 1.6 mol%. On the basis of phylogenetic, chemotaxonomic and phenotypic data, strain LAM9153^T is concluded to represent a novel species of the genus Chitinophaga, for which the name Chitinophaga salinisoli sp. nov. is proposed. The type strain is LAM9153^T (= ACCC 19960^T = JCM 30847^T).     

Description of Hymenobacter arizonensis sp. nov. from the southwestern arid lands of the United States of America

Strain OR362-8^T was isolated from a biological soil crust sample collected from the southwestern arid lands of the United States of America, using BG11-PGY medium. Cells of OR362-8^T were found to be rod shaped; occur singly, as pairs and in groups; non-motile; positive for catalase, oxidase, phosphatase and gelatinase; hydrolyze starch; contain iso-C_15:0, anteiso-C_15:0, iso-C_15:1G, C_16:1ω5c and summed feature 3 (C_16:1(ω7c)/iso-C_15:0 2OH as defined by the MIDI system) as the major fatty acids; and MK-7 as the sole respiratory quinone. A BLAST sequence similarity search using 16S rRNA gene sequence of OR362-8^T identified Hymenobacter as the nearest genus with a similarity of 90.4–96.9 %. The phylogenetic analyses based on the phenetic methods UPGMA, NJ, ME and DNA parsimony resulted in the clustering of OR362-8^T with Clade 1 Hymenobacter species represented by Hymenobacter glaciei, Hymenobacter antarcticus, Hymenobacter flocculans, Hymenobacter metalli and Hymenobacter soli with the closest being the Hymenobacter glaciei (96.9 % 16S rRNA gene sequence similarity). Besides the strong phylogentic affiliation, OR362-8^T also exhibited significant phenotypic and chemotaxonomic differences with the members of Clade 1 Hymenobacter spp. More importantly, the DNA G+C content (mol%) of OR362-8^T is very high (70 %) compared to the nearest species identified by phylogenetic analysis. Based on the phylogenetic, phenotypic and chemotaxonomic characteristics, OR362-8^T was assigned to a novel species for which we propose here the name Hymenobacter arizonensis sp. nov., with OR362-8^T (=ATCC BAA 1266^T = DSM 17860^T = JCM 13504^T) as the type strain.     

<Emphasis Type="Italic">Larkinella terrae</Emphasis> sp. nov., isolated from soil on Jeju Island,South Korea

A Gram-stain negative, non-motile, rod-shaped, aerobic bacterium, designated 15J8-8^T, was isolated from a soil sample collected on Jeju Island, South Korea, and characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain 15J8-8^T belongs to the family Cytophagaceae and is related to Larkinella bovis M2TB15^T (95.0%), ‘Larkinella harenae’ 15J9-9 (94.5%), Larkinella arboricola Z0532^T (93.2%), and Larkinella insperata LMG 22510^T (93.0%). The DNA G+C content of strain 15J8-8^T was 50.5 mol%. The detection of phosphatidylethanolamine and two unidentified polar lipids as major polar lipids; menaquinone-7 as the predominant quinone; and C_16:1 ω5c, C_16:0 N alcohol, and iso-C_15:0 as the major fatty acids also supported the affiliation of the isolate to the genus Larkinella. Based on its phenotypic properties and phylogenetic distinctiveness, strain 15J8-8^T should be classified in the genus Larkinella as representative of a novel species, for which the name Larkinella terrae sp. nov. is proposed. The type strain is 15J8-8^T (= KCTC 52001^T = JCM 31990^T).     

Niabella terrae sp. nov. isolated from greenhouse soil

An orange-colored bacterial strain, ICM 1–15^T, was isolated from greenhouse soil. The 16S rRNA gene sequence of this strain showed the highest sequence similarity with Niabella ginsengisoli GR10-1^T (95.2%) and Niabella yanshanensis CCBAU 05354^T (95.0%) among the type strains. The strain ICM 1–15^T was a strictly aerobic, Gram-negative, non-spore-forming, non-motile, flexirubin pigment-producing, short rod-shaped bacterium. The strain grew at 15–35°C (optimum, 25°C), at a pH of 5.0–8.5 (optimum, pH 6.5), and in the presence of 0–3% NaCl (optimum, 1%). The DNA G+C content of strain ICM 1–15^T was 43.6 mol%. It contained MK-7 as the major isoprenoid quinone and iso-C_15:0 (38.9%), iso-C_15:1 G (20.3%), and iso-C_17:0 3-OH (12.9%) as the major fatty acids. On the basis of evidence from our polyphasic taxonomic study, we concluded that strain ICM 1–15^T should be classified within a novel species of the genus Niabella, for which the name Niabella terrae sp. nov. is proposed. The type strain is ICM 1–15^T (=KACC 17443^T =JCM 19502^T).     

<Emphasis Type="Italic">Pedobacter yonginense</Emphasis> sp. nov., isolated from a mesotrophic artificial Lake in Korea

A non-motile red-pigmented bacterium, designated strain HMD1002^T, was isolated from an artificial lake located on the campus of Hankuk University of Foreign Studies, South Korea. The major fatty acids were iso-C_15:0 (29.6%), Summed Feature 3 (comprising C_16:1 ω7c and/or iso-C_15:0 2-OH; 17.5%) and iso-C_17:0 3-OH (12.5%). The major isoprenoid quinone was menaquinone-7 (MK-7). The DNA G+C content was 41.0 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HMD1002^T formed a lineage in the genus Pedobacer and was closely related to Pedobacer terrae (96.3%) and Pedobacer suwonensis (95.8%) in sequence similarity. On the basis of the evidence presented in this study, strain HMD1002^T represents a novel species of the genus Pedobacter, for which the name Pedobacter yonginense sp.nov. is proposed. The type strain is HMD1002^T (=KCTC 22721^T = CEC^T 7544^T).     

Shewanella litorisediminis sp. nov., a gammaproteobacterium isolated from a tidal flat sediment

A Gram-negative, facultatively anaerobic, non-motile and rod-shaped bacterial strain, designated SMK1-12^T, was isolated from a tidal flat sediment on the western coast of Korea. Phylogenetic analyses based on 16S rRNA and gyrB gene sequences showed that strain SMK1-12^T belonged to the genus Shewanella, clustering with the type strain of Shewanella amazonensis. Strain SMK1-12^T exhibited the highest 16S rRNA gene sequence similarity value (97.0 %) and the highest gyrB sequence similarity value (87.8 %) to S. amazonensis SB2B^T, respectively. Strain SMK1-12^T contained simultaneously both menaquinones and ubiquinones; the predominant menaquinone was MK-7 and the predominant ubiquinones were Q-7 and Q-8. The major fatty acids (>10 % of the total fatty acids) detected in strain SMK1-12^T were the MIDI system summed feature 3 (iso-C_15:0 2-OH and/or C_16:1 ω7c), iso-C_15:0, C_17:1 ω8c and C_16:0. The DNA G+C content of strain SMK1-12^T was 58.0 mol% and its mean DNA–DNA relatedness value with S. amazonensis ATCC 700329^T was 15 ± 4.6 %. Differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain SMK1-12^T is distinguishable from recognized Shewanella species. On the basis of the data presented, strain SMK1-12^T is considered to represent a novel Shewanella species, for which the name Shewanella litorisediminis sp. nov. is proposed. The type strain is SMK1-12^T (=KCTC 23961^T = CCUG 62411^T).     

Isolation and Characterization of Marine Nonylphenol-Degrading Bacteria and Description of Pseudomaricurvus alkylphenolicus gen. nov., sp. nov.

Two novel aerobic p-n-nonylphenol-degrading bacterial strains were isolated from seawater obtained from the coastal region of Ogasawara Islands, Japan. The 16S rRNA gene sequence analysis indicated that the strains are affiliated with the order Alteromonadales within the class Gammaproteobacteria. One isolate, strain KU41G2, is most closely related to Maricurvus nonylphenolicus (99.2 % similarity), and is tentatively identified as M. nonylphenolicus. The other isolate, strain KU41G^T, is also most closely related to M. nonylphenolicus; however, the 16S rRNA gene sequence similarity was only 94.7 %. Cells of strain KU41G^T are Gram-negative rods with a single polar flagellum. The predominant respiratory lipoquinone was ubiquinone-8, and the major cellular fatty acids were C_17:1 ω8c (24.2 %); C_15:0 iso 2-OH; and/or C_16:1 ω7c (16.3 %), C_15:0 (10.3 %), C_11:0 3-OH (9.5 %), C_9:0 3-OH (6.7 %), C_10:0 3-OH (6.4 %), and C_18:1 ω7c (5.5 %). The DNA G+C content was 53.3 mol%. On the basis of physiological, chemotaxonomic, and phylogenetic data, strain KU41G^T is suggested to represent a novel species of a new genus, for which we propose the name Pseudomaricurvus alkylphenolicus gen. nov., sp. nov. The type strain of P. alkylphenolicus is KU41G^T (=JCM 19135^T = KCTC 32386^T).     

<Emphasis Type="Italic">Hymenobacter agri</Emphasis> sp. nov., a novel bacterium isolated from soil

A bacterial isolate was recovered from a soil sample collected in Jeollabuk-do Province, South Korea, and subjected to polyphasic taxonomic assessment. Cells of the isolate, designated strain S1-2-1-2-1^T, were observed to be rod-shaped, pink in color, and Gram-stain negative. The strain was able to grow at temperature range from 10 to 30 °C, with an optimum of 25 °C, and growth occurred at pH 6–8. Comparative 16S rRNA gene sequence analysis showed that strain S1-2-1-2-1^T belongs to the genus Hymenobacter, with closely related type strains being Hymenobacter daeguensis 16F3Y-2^T (95.8% similarity), Hymenobacter rubidus DG7B^T (95.8%), Hymenobacter soli PB^T (95.7%), Hymenobacter terrenus MIMtkLc17^T (95.6%), Hymenobacter terrae DG7A^T (95.3%), and Hymenobacter saemangeumensis GSR0100^T (95.2%). The genomic DNA G+C content of strain S1-2-1-2-1^T was 63.0 mol%. The main polar lipid of this strain was phosphatidylethanolamine, the predominant respiratory quinone was menaquinone-7, and the major fatty acids were C_15:0 iso (27.3%), summed feature 3 (C_16:1 ω7c/C_16:1 ω6c) (16.5%), C_15:0 anteiso (15.3%), and C_16:0 (14.7%), supporting the affiliation of this strain with the genus Hymenobacter. The results of this polyphasic analysis allowed for the genotypic and phenotypic differentiation of strain S1-2-1-2-1^T from recognized Hymenobacter species. On the basis of its phenotypic properties, genotypic distinctiveness, and chemotaxonomic features, strain S1-2-1-2-1^T is considered to represent a novel species of the genus Hymenobacter, for which the name Hymenobacter agri sp. nov. is proposed. The type strain is S1-2-1-2-1^T (=KCTC 52739^T?=?JCM 32194^T).     

<Emphasis Type="Italic">Spirosoma daeguensis</Emphasis> sp. nov., isolated from beach soil

A Gram-stain-negative, non-motile, non-spore-forming, rod-shaped, aerobic bacterium, designated 15J9-6^T, was isolated from beach soil on Jeju Island, South Korea. Strain 15J9-6^T, grew at 10–30°C (optimum growth at 25°C) and pH 7–8 (optimum growth at pH 7) on R2A, NA, and TSA agar. Phylogenetically, the strain was closely related to members of the genus Spirosoma (92.3–90.1% 16S rRNA gene sequence similarities) and showed highest sequence similarity to Spirosoma panaciterrae DSM 21099^T (92.3%). The G+C content of the genomic DNA of strain 15J9-6^T was 45.7 mol%. The strain contained phosphatidylethanolamine, two unidentified aminophospholipids, an unidentified phospholipid, and an unidentified lipid as the major polar lipids; menaquinone MK-7 as the predominant respiratory quinone and summed feature 3 (C_16:1 ω6c/C_16:1 ω7c; 30.1%), C_16:1 ω5c (23.1%), iso C_15:0 (13.3%), and C_16:0 (8.4%) as the major fatty acids which supported the affiliation of strain 15J9-6^T to the genus Spirosoma. The results of physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain 15J9-6^T from recognized Spirosoma species. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain 15J9-6^T represents a novel species of the genus Spirosoma, for which the name Spirosoma daeguensis sp. nov. is proposed. The type strain is 15J9-6^T (=KCTC 52036^T =JCM 31995T)     

Pseudomonas nitritireducens sp. nov., a nitrite reduction bacterium isolated from wheat soil

A Gram-negative, non-mobile, polar single flagellum, rod-shaped bacterium WZBFD3-5A2^T was isolated from a wheat soil subjected to herbicides for several years. Cells of strain WZBFD3-5A2^T grow optimally on Luria-Bertani agar medium at 30?°C in the presence of 0–4.0?% (w/v) NaCl and pH 8.0. 16S rRNA gene sequence analysis revealed that strain WZBFD3-5A2^T belongs to the genus Pseudomonas. Physiological and biochemical tests supported the phylogenetic affiliation. Strain WZBFD3-5A2^T is closely related to Pseudomonas nitroreducens IAM1439^T, sharing 99.7?% sequence similarity. DNA–DNA hybridization experiments between the two strains showed only moderate reassociation similarity (33.92?±?1.0?%). The DNA G+C content is 62.0?mol%. The predominant respiratory quinine is Q-9. The major cellular fatty acids present are C_16:0 (28.55?%), C_16:1ω6c or C_16:1ω7c (20.94?%), C_18:1ω7c (17.21?%) and C_18:0 (13.73?%). The isolate is distinguishable from other related members of the genus Pseudomonas on the basis of phenotypic and biochemical characteristics. From the genotypic, chemotaxonomic and phenotypic data, it is evident that strain WZBFD3-5A2^T represents a novel species of the genus Pseudomonas, for which the name Pseudomonas nitritereducens sp. nov. is proposed. The type strain is WZBFD3-5A2^T (=CGMCC 1.10702^T?=?LMG 25966^T).     

<Emphasis Type="Italic">Hymenobacter daeguensis</Emphasis> sp. nov. isolated from river water

A Gram-stain-negative, non-motile, non-spore-forming, rod-shaped, aerobic bacterial strain, designated 16F3Y-2^T, was isolated from the Han River, South Korea, and was characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain 16F3Y-2^T belonged to the family Cytophagaceae in the phylum Bacteroidetes and was most closely related to ‘Hymenobacter terrae’ DG7A (98.01%), H. soli PB17^T (97.26%), H. glaciei VUG-A130^T (96.78%), H. antarcticus VUG-A42aa^T (96.72%), H. ruber PB156^T (96.61%), and H. saemangeumensis GSR0100^T (95.77%). The G+C content of the genomic DNA of strain 16F3Y-2^T was 62.9 mol%. The isolate contained MK-7 as the predominant respiratory quinone, and summed feature 3 (C_16:1 ω7c/C_16:1 ω6c; 35.5%), C_15:0 iso (16.9%), C_16:1 ω5c (10.9%), and C_15:0 anteiso (9.9%) as major fatty acids. The major polar lipid was phosphatidylethanolamine. Phenotypic and chemotaxonomic data supported the affiliation of strain 16F3Y-2^T with the genus Hymenobacter. However, strain 16F3Y-2^T exhibited relatively low levels of DNA-DNA relatedness with ‘H. terrae’ KCTC 32554 (44.1%) and H. soli KCTC 12607^T (24.3%), clearly indicating that the isolate constitutes a new genospecies. Strain 16F3Y-2^T could be differentiated from its phylogenetic neighbors on the basis of several phenotypic, genotypic, and chemotaxonomic features. Therefore, strain 16F3Y-2^T represents a novel species in the genus Hymenobacter, for which the name Hymenobacter daeguensis sp. nov. is proposed. The type strain is 16F3Y-2^T (=KCTC 52537^T =JCM 31654^T).     

Parendozoicomonas haliclonae gen. nov. sp. nov. isolated from a marine sponge of the genus Haliclona and description of the family Endozoicomonadaceae fam. nov. comprising the genera Endozoicomonas,Parendozoicomonas, and Kistimonas

Two Gram-stain-negative, facultative anaerobic, motile, rod-shaped strains, S-B4-1U^T and JOB-63a, forming small whitish transparent colonies on marine agar, were isolated from a sponge of the genus Haliclona. The strains shared 99.7% 16S rRNA gene sequence identity and a DNA-DNA hybridization value of 100%, but were differentiated by genomic fingerprinting using rep-PCRs. 16S rRNA gene sequence phylogeny placed the strains as a sister branch to the monophyletic genus Endozoicomonas (Oceanospirillales; Gammaproteobacteria) with 92.3–94.3% 16S rRNA gene sequence similarity to Endozoicomonas spp., 91.9 and 92.1% to Candidatus Endonucleobacter bathymodiolin, and 91.9 to 92.1% to the type strains of Kistimonas spp. Core genome based phylogeny of strain S-B4-1U^T confirmed the phylogenetic placement. Major fatty acids were summed feature 3 (C_16:1 ω7c/C_16:1 ω6c) and 8 (C_18:1 ω7c/C_18:1 ω6c) followed by C_10:0 3-OH, C_16:0, and C_18:0. The G + C content was 50.1–51.4 mol%. The peptidoglycan diamino acid of strain S-B4-1U^T was meso-diaminopimelic acid, the predominant polyamine spermidine, the major respiratory quinone ubiquinone Q-9; phosphatidylethanolamine, phosphatidylglycerol and phosphatidylserine were major polar lipids. Based on the clear phylogenetic distinction, the genus Parendozoicomonas gen. nov. is proposed, with Parendozoicomonas haliclonae sp. nov. as type species and strain S-B4-1U^T (= CCM 8713^T = DSM 103671^T = LMG 29769^T) as type strain and JOB-63a as a second strain of the species. Based on the 16S rRNA gene sequence phylogeny of the Oceanospirillales within the Gammaproteobacteria, the Endozoicomonaceae fam. nov. is proposed including the genera Endozoicomonas, Parendozoicomonas, and Kistimonas as well as the Candidatus genus Endonucleobacter.     

<Emphasis Type="Italic">Sphingomonas aeria</Emphasis> sp. nov. from indoor air of a pharmaceutical environment

A proteobacterial strain designated R1-3^T was isolated from indoor air of a pharmaceutical environment. Cells were Gram-stain-negative, oxidase- and catalase-positive, aerobic, motile and rod-shaped. Strain R1-3^T grew optimally at pH 7, 30 °C and in 0–2 % NaCl on R2A agar. The 16S rRNA gene sequence analysis indicated that strain R1-3^T belongs to the genus Sphingomonas, and is closely related to Sphingomonas paucimobilis ATCC 29837^T (98.4 % sequence similarity). However, the DNA–DNA relatedness between the two strains was 43 ± 5 % (reciprocal = 37 ± 3 %), which was well below the suggested level for species distinction. Sphingomonas yabuuchiae GTC868^T (97.7 % 16S rRNA gene sequence similarity) and Sphingomonas pseudosanguinis G1-2^T (97.6 %) were also found as distantly related taxa. Strain R1-3^T was sensitive to most of the tested antibiotics except for erythromycin and streptomycin. The major fatty acid was a summed feature consisting of C_18:1 ω7c and/or C_18:1 ω6c, and minor proportions of C_14:0 2-OH, C_16:0 and a summed feature consisting of C_16:1 ω7c and/or C_16:1 ω6c were also present. The DNA G + C content was 67.2 ± 1.0 mol%. The major polyamines were sym-homospermidine and spermidine. The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, and minor amounts of a sphingoglycolipid, a phospholipid, an aminoglycolipid and an unidentified lipid were also present. The phenotypic, phylogenetic and chemotaxonomic data not only supported the affiliation of strain R1-3^T to the genus Sphingomonas, but also distinguished R1-3^T from related species. On the basis of physiological, chemotaxonomic and phylogenetic evidences, strain R1-3^T clearly merits recognition as a novel species of Sphingomonas, for which the name Sphingomonas aeria sp. nov. is proposed. The type strain is R1-3^T (= KCTC 42061^T = JCM 19859^T).     

Parvularcula oceanus sp. nov., isolated from deep-sea water of the Southeastern Pacific Ocean

A Gram-negative, aerobic, motile by single polar flagellum, short rod-shaped bacterium was isolated from a deep-seawater sample of the Southeastern Pacific Ocean. Growth was found to occur at 10–40 °C, at pH 4.0–10.0 and in the presence of 0–9.0 % (w/v) NaCl. The phylogenetic tree based on 16S rRNA gene sequences showed that strain JLT2013^T fell within a clade comprising species of the genus Parvularcula and formed a coherent cluster with Parvularcula lutaonensis CC-MMS-1^T (neighbour-joining phylogenetic tree) or Parvularcula dongshanensis SH25^T (maximum-likelihood and maximum-parsimony phylogenetic trees). Sequence similarity analyses based on 16S rRNA gene sequences revealed that strain JLT2013^T shows high sequence similarity to P. lutaonensis CC-MMS-1^T (96.7 %), P. dongshanensis SH25^T (96.0 %) and Parvularcula bermudensis HTCC2503^T (95.2 %). The major cellular fatty acids were identified as C_12:0 (34.3 %), summed feature 8 (C_18:1 ω7c and/or C_18:1 ω6c) (10.9 %), C_16:0 (10.0 %) and C_17:1 ω6c (7.2 %). The polar lipids were found to include diphosphatidylglycerol, phosphatidylglycerol, three sphingoglycolipids and three unknown glycolipids. Strain JLT2013^T was found to contain Q-10 as the predominant quinone. The DNA G+C content was determined to be 66.3 mol%. In the light of the phenotypic characteristics, chemotaxonomic features and phylogenetic evidence gathered in this study, strain JLT2013^T (=LMG 27362^T = CGMCC 1.12400^T) should be classified as a novel species in the genus Parvularcula, for which the name Parvularcula oceanus sp. nov. is proposed.     

Mucilaginibacter calamicampi sp. nov., a member of the family Sphingobacteriaceae isolated from soil at a field of reeds

A Gram-negative, aerobic, non-flagellated, non-gliding, rod-shaped bacterial strain, designated WR-R1Y^T, was isolated from soil at a field of reeds in South Korea. Strain WR-R1Y^T grew optimally at 30 °C, at pH 7.0–7.5 and in the absence of NaCl. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain WR-R1Y^T fell within the clade comprising Mucilaginibacter species, coherently clustering with the type strain of Mucilaginibacter composti, with which it exhibited the highest 16S rRNA gene sequence similarity value of 97.6 %. Sequence similarities to the type strains of the other Mucilaginibacter species and the other species used in the phylogenetic analysis were 93.1–96.9 % and <91.1 %, respectively. Strain WR-R1Y^T contained MK-7 as the predominant menaquinone and iso-C_15:0, summed feature 3 (C_16:1 ω6c and/or C_16:1 ω7c), C_16:0 and iso-C_17:0 3-OH as the major fatty acids. The major polar lipids were phosphatidylethanolamine and one unidentified aminophospholipid. The DNA G+C content of strain WR-R1Y^T was 43.1 mol% and its mean DNA–DNA relatedness value with M. composti KACC 14956^T was 17 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain WR-R1Y^T is separate from other Mucilaginibacter species. On the basis of the data presented, strain WR-R1Y^T represents a novel species of the genus Mucilaginibacter, for which the name Mucilaginibacter calamicampi sp. nov. is proposed. The type strain is WR-R1Y^T (= KCTC 32214^T = CCUG 63418^T).     

Sphingomonas ginsenosidivorax sp. nov., with the ability to transform ginsenosides

A Gram-negative, strictly aerobic, non-motile, non-spore-forming and rod-shaped bacterial strain designated KHI67^T was isolated from sediment of the Gapcheon River in South Korea and its taxonomic position was investigated by using a polyphasic approach. Strain KHI67^T was observed to grow optimally at 25–30 °C and at pH 7.0 on nutrient and R2A agar. On the basis of 16S rRNA gene sequence similarity, strain KHI67^T was shown to belong to the family Sphingomonadaceae and was related to Sphingomonas faeni MA-olki^T (97.6 % sequence similarity), Sphingomonas aerolata NW12^T (97.5 %) and Sphingomonas aurantiaca MA101b^T (97.3 %). The G + C content of the genomic DNA was determined to be 65.6 %. The major ubiquinone was found to be Q-10, the major polyamine was identified as homospermidine and the major fatty acids identified were summed feature 8 (comprising C_18:1 ω7c/ω6c; 37.0 %), C_16:0 (13.0 %), summed feature 3 (comprising C_16:1 ω7c/C_16:1 ω6c; 12.8 %) and C_14:0 2OH (9.3 %). DNA and chemotaxonomic data supported the affiliation of strain KHI67^T to the genus Sphingomonas. The DNA–DNA relatedness values between strain KHI67^T and its closest phylogenetic neighbours were below 15 %. Strain KHI67^T could be differentiated genotypically and phenotypically from the recognised species of the genus Sphingomonas. The isolate therefore represents a novel species, for which the name Sphingomonas ginsenosidivorax sp. nov. is proposed, with the type strain KHI67^T (=KACC 14951^T = JCM 17076^T = LMG 25801^T).     

Chitinibacter suncheonensis sp. nov., a chitinolytic bacterium from a mud flat in Suncheon Bay

A chitinolytic bacterium, designated strain SK16^T, was isolated from a mud flat in Suncheon Bay, Republic of Korea. Strain SK16^T is Gram-negative, strictly aerobic, motile by a polar flagellum, and short rod-shaped. Phylogenetic analyses based on 16S rRNA gene sequences showed that the strain belonged to the genus Chitinibacter and was most closely related to Chitinibacter tainanensis S1^T (98.2% similarity). DNA-DNA hybridization analyses showed a low association value of 20.45±4.08% between them. The major cellular fatty acids, the G+C content of the genomic DNA, and the predominant quinone of the strain were summed feature 3 (iso-C_15:0 2-OH and/or C_16:1 ω7c; 50.5%) and C_12:0 (12.5%), 52.26 mol%, and Q-8, respectively. Based on the phylogenetic, chemotaxonomic, and phenotypic properties, strain SK16^T represents a novel species of the genus Chitinibacter, for which the name Chitinibacter suncheonensis sp. nov. is proposed. The type strain is SK16^T (=KCTC 23839^T =DSM 25421^T).     

Devosia lucknowensis sp. nov., a bacterium isolated from hexachlorocyclohexane (HCH) contaminated pond soil

Strain L15^T, a Gram-negative, motile, orange colored bacterium was isolated from pond soil in the surrounding area of a hexachlorocyclohexane (HCH) dump site at Ummari village in Lucknow, India. Phylogenetic analysis based on 16S rRNA gene sequence showed that strain L15^T belongs to the family Hyphomicrobiaceae in the order Rhizobiales. Strain L15^T showed highest 16S rRNA gene sequence similarity to Devosia chinhatensis IPL18^T (98.0%). Chemotaxonomic data revealed that the major fatty acids were summed feature 8 (C_18:1 ω7c and/or C_18:1 ω6c), C_18:1 ω7c 11-methyl, C_16:0 and C_18:0. The major polar lipids of strain L15^T were diphosphatidylglycerol and phosphatidylglycerol. The genomic DNA G+C content of strain L15^T was 59.8%. Polyamine profile showed the presence of sym-homospermidine with traces of putrescine. Ubiquinone Q-10 was the major respiratory quinone present. Based on these data, strain L15^T (=CCM 7977^T =DSM 25398^T) was classified as a type strain of a novel species, for which the name Devosia lucknowensis sp. nov. is proposed.     

Hymenobacter negativus sp. nov., bacteria isolated from mountain soil collected in South Korea

Two novel Gram-negative bacterial strains BT442^T and BT584 were isolated from dry soil collected in mountains Busan and Guri, Korea during wintertime. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strains BT442^T and BT584 both belong to a distinct lineage within the genus Hymenobacter (family Hymenobacteraceae, order Cytophagales, class Cytophagia). Strain BT442^T was closely related to Hymenobacter soli PB17^T (98.0% 16S rRNA gene similarity) and Hymenobacter terrae POA9^T (97.6%). No other recognized bacterial species showed more than 97% 16S rRNA gene sequence similarity to strains BT442^T. The genome size of strain BT442^T was 5,143,362 bp. Bacterial growth was observed at 10–30 °C (optimum 25 °C), pH 6.0–8.0 (optimum pH 6.0) in R2A agar and in the presence up to 1% NaCl. The major cellular fatty acids of strains BT442^T and BT584 were iso-C_15:0, anteiso-C_15:0 and summed feature 3 (C_16:1 ω6c / C_16:1 ω7c). In addition, their predominant respiratory quinone was MK-7. The major polar lipids of strains BT442^T and BT584 were identified to be phosphatidylethanolamine, aminophospholipid, and aminolipid. Based on the biochemical, chemotaxonomic, and phylogenetic analyses, strains BT442^T and BT584 are novel bacterial species within the genus Hymenobacter, and the proposed name is Hymenobacter negativus. The strain type of Hymenobacter negativus is BT442^T (=?KCTC 72902^T?=?NBRC XXXX^T).

     

<Emphasis Type="Italic">Hymenobacter terrigena</Emphasis> sp. nov., isolated from soil

A Gram-stain-negative, non-motile, non-spore-forming, rodshaped, aerobic bacterial strain, designated S1-2-2-5^T, was isolated from the Jeollabuk-do province, Republic of Korea, and was characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain S1-2-2-5^T belonged to the family Cytophagaceae in phylum Bacteroidetes, and was most closely related to Hymenobacter terrae DG7A^T (98.2%), Hymenobacter rubidus DG7B^T (98.0%), Hymenobacter soli PB17^T (97.7%), Hymenobacter daeguensis 16F3Y-2^T (97.2%) and Hymenobacter saemangeumensis GSR0100^T (97.0%). The G + C content of the genomic DNA of strain S1-2-2-5^T was 59.4 mol%. The detection of menaquinone MK-7 as the predominant respiratory quinone, a fatty acid profile with summed feature 3 (C_16:1ω7c/C_16:1ω6c; 32.0%), C_15:0 iso (19.0%), and C_15:0 anteiso (15.0%) as the major components, and a polar lipid profile with phosphatidylethanolamine as the major component supported the affiliation of strain S1-2-2-5^T to the genus Hymenobacter. The DNA-DNA relatedness between strain S1-2-2-5^T and H. terrae KCTC 32554^T, H. rubidus KCTC 32553^T, H. soli KCTC 12607^T, H. daeguensis KCTC 52537^T, and H. saemangeumensis KACC 16452^T were 49.5, 48.2, 34.1, 28.1, and 31.8% respectively, clearly showing that the isolate is not related to them at the species level. Strain S1-2-2-5^T could be clearly differentiated from its closest neighbors on the basis of its phenotypic, genotypic and chemotaxonomic features. Therefore, strain S1-2-2-5^T represents a novel species of the genus Hymenobacter, for which the name Hymenobacter terrigena sp. nov. is proposed. The type strain is S1-2-2-5^T (= KCTC 52737^T = JCM 32195^T).