Influence of Photoperiod on Culm Elongation and Apical Development in Semi-dwarf and Standard-height Wheats

Flower initiation (FI) coincided with the commencement of culmelongation under both long (18 h) and normal (104–144h) photoperiod in eight spring wheats, including both gibberellicacid-sensitive and -insensitive types, which differed widelyin photoperiod sensitivity At FI the apex was significantly (P = 005) higher (above ground)in three of the wheats under long, compared with normal photoperiod;with no difference between the remaining five. Differences inresponse were not related to photoperiod response or gibberellicacid-sensitivity/insensitivity differences between the wheats. Long photoperiod prolonged the phase from terminal spikeletinitiation (TSI) to anthesis (A) in all the wheats, except Sunset(with the greatest photoperiod insensitivity), with no cleardifferences in response between semi-dwarf and standard-heightwheats. Respective rates of culm elongation from FI to TSI were lowerunder normal, compared with long, photoperiod in all varieties.That from TSI to A was unaffected by photoperiod, except inSunset when it was significantly (P = 001) slower under long,compared with normal photoperiod. Rate of culm elongation from FI to TSI across cultivars andphotoperiods was inversely related to spikelet number per head(r = –053, P = 005) but not to rate of spikelet initiation(r = –014 n.s.). Gibberellin-sensitivity, spikelet number, flower initiation, terminal spikelet initiation     

Development of a Common Oligonucleotide Reference Standard for Microarray Data Normalization and Comparison across Different Microbial Communities

High-density functional gene arrays have become a powerful tool for environmental microbial detection and characterization. However, microarray data normalization and comparison for this type of microarray remain a challenge in environmental microbiology studies because some commonly used normalization methods (e.g., genomic DNA) for the study of pure cultures are not applicable. In this study, we developed a common oligonucleotide reference standard (CORS) method to address this problem. A unique 50-mer reference oligonucleotide probe was selected to co-spot with gene probes for each array feature. The complementary sequence was synthesized and labeled for use as the reference target, which was then spiked and cohybridized with each sample. The signal intensity of this reference target was used for microarray data normalization and comparison. The optimal amount or concentration were determined to be ca. 0.5 to 2.5% of a gene probe for the reference probe and ca. 0.25 to 1.25 fmol/μl for the reference target based on our evaluation with a pilot array. The CORS method was then compared to dye swap and genomic DNA normalization methods using the Desulfovibrio vulgaris whole-genome microarray, and significant linear correlations were observed. This method was then applied to a functional gene array to analyze soil microbial communities, and the results demonstrated that the variation of signal intensities among replicates based on the CORS method was significantly lower than the total intensity normalization method. The developed CORS provides a useful approach for microarray data normalization and comparison for studies of complex microbial communities.Microarray-based technology has become a robust genomic tool to detect, track, and profile hundreds to thousands of different microbial populations simultaneously in complex environments such as soils and sediments. For example, GeoChip, a comprehensive functional gene array, has been developed for investigating biogeochemical, ecological, and environmental processes (12, 18, 23, 27, 29, 32). Although a massive amount of microarray data can be generated rapidly, one of the bottlenecks in using microarrays for environmental microbial community studies is the lack of an appropriate standard for data comparison and normalization (6). Currently, it is difficult to compare microarray data across different sites, experiments, laboratories, and/or time periods (10). This limits the power of the technology to address ecological and environmental questions.In pure culture-based functional genomics studies, genomic DNAs (gDNAs) have been used as a common reference for hybridizations in which the same amount of gDNAs are used to cohybridize with each target cDNA sample and then to normalize different target cDNAs based on the gDNA standard (4, 5, 8, 9, 19, 21, 23). Several normalization methods such as scale normalization, quantile normalization, and Lowess normalization have been used for gene expression studies (2). Using the gDNA standard method can minimize or eliminate differences in target cDNA quantity, spot morphology, uneven hybridization, labeling, and sequence-specific hybridization behaviors (5), and this allows the comparison of microarray data across different sites, laboratories, experiments, and/or times. The main rationale for gDNA as a common reference is that it provides complete coverage for all genes represented on the array because the DNA composition from a particular organism should be identical across different treatment samples even though RNA expression is different (8). However, this approach is not applicable to microbial community studies because not all communities have identical DNA compositions. Pooling of equal amounts of gDNA or RNA from every target sample to make a common sample could be used as an alternative reference for cohybridization (1, 22). However, the disadvantage of the sample pooling approach is that samples do not provide large amounts of DNA or RNA in a reliable and reproducible way. For example, groundwater samples usually have a very low biomass and thus would not provide enough DNA for pooling. In addition, the sample pool itself is uncharacterized, and gene abundance may be diluted out so that insufficient DNA is present to result in a positive signal some array features, especially for those genes in low abundance. Moreover, a new sample pool would be required for every new experiment, making comparison across experiments difficult. Thus, other approaches need to be developed for microbial community studies.Dudley et al. (7) used a 25-mer oligonucleotide that matched a small portion of the parental EST clone vector contained in every PCR product printed on the array for normalization of pure culture RNA expression. Although the oligonucleotide generated a stable hybridization signal on every array feature, this method requires a universal sequence tag as a “capture” sequence, limiting its general use in microbial community studies. Thus, in the present study, we developed a common oligonucleotide reference standard (CORS) approach by co-spotting a common oligonucleotide with each array feature to improve the accuracy and comparability of microarray data for microbial community studies. This method was evaluated by using a pilot array, a whole-genome array, and a functional gene array, and all results demonstrate that the developed CORS is a reliable and reproducible method for microarray data normalization and comparison for microbial community studies.     

Analysis of Growth and Yield of Winter and Spring Wheats

In a field experiment to investigate the physiological causesof variation in yield between autumn- and spring-sown wheatand between old and new varieties, the grain yields of the winterwheats were 3-15 per cent, greater than of the spring ones andthe new varieties Cappelle-Desprez and Jufy I yielded 40-70per cent, more than Squarehead's Master and Atle. Nitrogen fertilizerincreased the yields of Cappelle-Desprez and Jufy I more thanof Atle, and decreased the yield of Squarehead's Master by makingit lodge. Until ear emergence the winter varieties had greater leaf-areaindices (L) and dry weights, but smaller net assimilation rates(E), than the spring varieties. Square-head's Master had greaterL but smaller E, and similar dry weight to Cappelle-Desprez.Jufy I had similar E to Atlc, but greater L and dry weight.Nitrogen increased L and dry weight, but decreased E. All thedifferences in E between varieties and nitrogen treatments couldbe explained by the opposite effects on L, that is to say, thedifferences in E were caused by variation in mutual shadingarising from the differences in L and not by changes in leafphysiology. L of winter wheat reached its maximum at the end of May, butL of spring wheat continued to increase until ear emergence.Afterwards Ldecreased more rapidly for winter than for springwheat, so that eventually spring wheat had the greater L. Thesedifferences in the time changes of L partially compensated forthe shorter growth period of spring wheat, and tended to equalizethe grain yield from winter and spring sowings. After ear emergence total dry weight of winter varieties continuedto be greater than of spring ones, but the difference in dryweight of ears was much smaller because ear: shoot dry-weightratio was greater for the spring varieties. Total dry weight,ear dry weight and ear: shoot ratio were all greater in thenew than in the old varieties. Leaf area duration (D) afterear emergence was slightly greater for the winter than for thespring varieties and similar for old and new. The apparent efficiencyof this leaf area in grain production, measured by the grainleaf ratio (ratio of grain dry weight to D), was similar forwinter and spring varieties but greater for new than for old.This suggests that Cappelle-Desprez and Jufy I have higher grainyields because their ears photosynthesize more than do the earsof Squarehead's Master and Atle. Before ear emergence winter varieties had more shoots than springones, and old varieties more than new. After ear emergence therewere only small differences in numbers of ears; percentage survivalwas greater for spring than for winter and for new than forold varieties. Differences in dry weight between varieties were not causedby differences in nitrogen uptake.     

Interspecific Polymorphism of DEP1 Genes and the Spike Shape in Wheats

Russian Journal of Genetics - In the present study, we performed an analysis of DEP1 gene sequences in ten accessions of Triticum macha Decapr. et Menabde, T. antiquorum Heer ex Udacz., T....     

普通型与矮生型梨叶片显微结构比较

应用扫描电镜和石蜡切片方法,对普通型和矮生型梨叶片的显微结构进行比较分析.结果表明:普通型和矮生型梨的叶片上表皮均有大量蜡质分布,气孔均分布在叶片下表皮,而矮生型蜡质层更厚.普通型和矮生型梨气孔器平均长轴×短轴分别为25.42 μm×19.39 μm和29.52 μm×16.85 μm,气孔平均长×宽分别为17.73 μm×5.37 μm和20.59 μm×4.07 μm;普通型和矮生型梨的叶片厚度平均值分别为196.35和227.99 μm,栅栏组织厚度平均值分别为54.93和79.13 μm,栅栏组织/海绵组厚度比平均分别为0.80和1.16.可见,野生型梨的叶片表皮蜡质层更厚,气孔更狭长,开度更小,叶片厚度和栅栏组织厚度显著较大,栅海比大于1,表现出抗旱耐寒的叶片结构特征.     

异细胞质中国春小麦与八倍体小偃麦杂交的细胞遗传研究

用5个异细胞质“中国春小麦”分别和八倍体小偃麦中_2、中_3,中_5杂交。F_1植株性状为两亲的中间型。D型细胞质和B型细胞质的作用基本相同。S型和G型细胞质严重影响F_1的育性,但二者表现不同,S型细胞质仅削弱花粉育性,而G型细胞质使有些杂交组合的F_1雄性完全不育。在中_3、中_5核基因组中存在G型细胞质雄性不育的育性恢复基因。M~t型细胞质可使所有杂交组合F_1植株大型化和抽穗期延长10—15天。此外,细胞遗传学分析表明,M~t型细胞质能促进同源染色体配对,而G型细胞质则促进部分同源染色体配对。G型细胞质对花粉母细胞减数分裂Ⅱ影响较大,产生许多异常四分体,最终引起雄性不育。上述杂交组合经连续回交,已育成异细胞质的八倍体小偃麦品系。     

Accuracy and Completeness of Drug Information in Wikipedia: A Comparison with Standard Textbooks of Pharmacology

The online resource Wikipedia is increasingly used by students for knowledge acquisition and learning. However, the lack of a formal editorial review and the heterogeneous expertise of contributors often results in skepticism by educators whether Wikipedia should be recommended to students as an information source. In this study we systematically analyzed the accuracy and completeness of drug information in the German and English language versions of Wikipedia in comparison to standard textbooks of pharmacology. In addition, references, revision history and readability were evaluated. Analysis of readability was performed using the Amstad readability index and the Erste Wiener Sachtextformel. The data on indication, mechanism of action, pharmacokinetics, adverse effects and contraindications for 100 curricular drugs were retrieved from standard German textbooks of general pharmacology and compared with the corresponding articles in the German language version of Wikipedia. Quantitative analysis revealed that accuracy of drug information in Wikipedia was 99.7%±0.2% when compared to the textbook data. The overall completeness of drug information in Wikipedia was 83.8±1.5% (p<0.001). Completeness varied in-between categories, and was lowest in the category “pharmacokinetics” (68.0%±4.2%; p<0.001) and highest in the category “indication” (91.3%±2.0%) when compared to the textbook data overlap. Similar results were obtained for the English language version of Wikipedia. Of the drug information missing in Wikipedia, 62.5% was rated as didactically non-relevant in a qualitative re-evaluation study. Drug articles in Wikipedia had an average of 14.6±1.6 references and 262.8±37.4 edits performed by 142.7±17.6 editors. Both Wikipedia and textbooks samples had comparable, low readability. Our study suggests that Wikipedia is an accurate and comprehensive source of drug-related information for undergraduate medical education.     

A Comparison of Root- and Shoot-wood Development in Conifer Seedlings

Tracheid diameter, wall thickness, and wall area per tracheidincreased towards the root tip in first-year seedlings of Piceasitchensis and Pinus sylvestris; this is shown to be associatedwith differences in duration of the expansion and wall thickeningphases of tracheid development. Transfer to short days producesa similar response throughout the plant, tracheid diameter andwall thickness decreasing shortly after transfer, due to a declinein rate of development. These data are discussed in relationto growth-regulator gradients likely to exist between root andshoot. It is pointed out that though effects of growth regulatorson tracheid dimensions are well documented, it has yet to beestablished whether this is due to their regulation of the rateor of the duration of development.     

Aggregation Behaviors of Glutens,Glutenins and Gliadins from Various Wheats

The aggregation behavior was investigated by the method presented in the previous paper, with the glutens separated from ten kinds of wheat flours different in the mixing property. It was shown that the rate constant of aggregation, k, increased in the order of the weak, medium and strong flour. This is an additional evidence for the correlation between the aggregation behavior of the separated gluten and the mixing property of the flour, which was suggested in the previous paper with four kinds of flours. The aggregation behaviors of glutenin and gliadin were also investigated after fractionation of gluten. A good correlation was observed between the τ₁₀/C values of gluten and glutenin separated from it, showing that the difference of the aggregation behavior of gluten is mainly due to the nature of glutenin.     

氮肥对杂交小麦组织氮转运及其杂种优势的影响

研究了施氮和不施氮条件下6个杂交小麦及其7个亲本不同器官的氮转运,结果表明:施氮时叶中的氮转运受到极显著的促进,其氮转运量为不施氮的4倍,总麦草90%以上的氮转运来自叶片;无论施氮与否,叶中氮的转运率和贡献率最大,穗壳次之,施氮与否的同一器官并无显著差异;不施氮的各器官氮的转运量、转运率和贡献率多表现正的杂种优势,施氮的多呈负向优势.     

A Comparison of Standard Lipid Staining Techniques Used in Electron Microscopic Studies of Mammalian Tissues

Comparisons of several standard techniques for staining lipids in ultrastructural studies have been undertaken using the rat uterine epithelium as the experimental tissue. The best technique for clarity, retention of stain, and acceptability of cellular ultrastructure utilized p-phenylenediamine after primary fixation in glutaraldehyde and postfixation in osmium tetroxide. While osmium by itself stained only unsaturated lipids and p-phenylenediamine stained no lipids in spot tests, when acting together, the staining of unsaturated lipids was enhanced and some staining of saturated lipids was seen. Further, the marked extraction of stained lipids normally found during dehydration did not then occur.     

A Comparison of the Effect of High Temperature on Grain Development in Wheat and Rice

Grain weight at maturity of the wheat cultivar Banks was reducedby about 5% for each 1 °C rise in daily mean post-anthesistemperature in the range from 17.7 to 32.7 °C, using grainweight at 17.7 °C as the base. In contrast, the rice cultivarCalrose had a stable grain weight up to 26.7 °C and abovethat showed a 4.4% drop in weight per 1 °C increase in meanpost-anthesis temperatures up to 35.7 °C, using grain weightat 26.7 °C as the base. In both wheat and rice there wasa reduction in the duration of grain growth with increasingtemperature up to a mean of 26.7 °C. In this range rice,but not wheat, showed a compensating increase in the rate ofdry-matter accumulation. Above 26.7 °C the rate of dry-matteraccumulation fell in both species, although this was more stablein rice than in wheat. In wheat the duration of grain growthcontinued to decrease at temperatures above 26.7 °C, butshowed little change in rice up to 35.7°C, the maximum tested.These data are discussed in relation to the physiological, biochemicaland physical constraints that may act to regulate grain developmentin wheat and rice at high temperature. Triticum aestivum, oryza sativa, grain development, high temperature effects     

A Comparison of Podocyturia,Albuminuria and Nephrinuria in Predicting the Development of Preeclampsia: A Prospective Study

Preeclampsia, a hypertensive multisystem disease that complicates 5–8% of all pregnancy, is a major cause for maternal and fetal mortality and morbidity. The disease is associated with increased spontaneous and evoked preterm birth and remote cardio-renal disorders in the mother and offspring. Thus the ability to predict the disease should lead to earlier care and decreased morbidity. This has led to fervent attempts to identify early predictive biomarkers and research endeavors that have expanded as we learn more regarding possible causes of the disease. As preeclampsia is associated with specific renal pathology including podocyte injury, early urinary podocyte (podocyturia), or the podocyte specific proteinuria nephrin in the urine (nephrinuria), as well as the more easily measured urinary albumin (albuminuria), have all been suggested as predictive markers. We performed a prospective study recruiting 91 pregnant women (78 of whom were high risk) and studied the predictive ability of these three urinary biomarkers. The subjects were recruited between 15–38 weeks of gestation. Fourteen patients, all in the high-risk obstetric group, developed preeclampsia. The levels of podocyturia, nephrinuria, and albuminuria were variably higher in the high-risk pregnant patients who developed preeclampsia. The sensitivities and specificities for podocyturia were 70% and 43%, for albuminuria were 36% and 96%, and for nephrinuria were 57% and 58%, respectively. Also, abnormal nephrinuria (69%) and podocyturia (38%) were detected in low risk women who had uncomplicated gestations; none of these women exhibited albuminuria. In our study, none of the three urinary markers achieved the minimum predictive values required for clinical testing. The lack of excessive albuminuria, however, may indicate a preeclampsia-free gestation. Given a discrepant literature, further studies with larger sample size should be considered.     

两株不同来源的嗜酸氧化亚铁硫杆菌对黄铜矿浸出的研究

为了比较两株不同来源的嗜酸氧化亚铁硫杆菌菌株在不同培养基中的亚铁氧化活性和黄铜矿浸出能力,本研究采用了分离自广东梅山酸性矿坑水中的菌株M1和标准菌株ATCC 23270,对其在9K培养基中的亚铁氧化活性和矿物培养基中氧化还原电位以及浸矿效率进行了测定,该矿物培养基中黄铜矿来自广东梅山.研究结果表明,菌株M1在9K培养基中需5天才能将亚铁完全氧化.而ATCC 23270只需4天,但是菌株MI的铜离子浸出效率(38%)却高于ATCC 23270(31%),浸出30天后,菌株M1浸矿体系的氧化还原电位从最初348 mV上升到520 mV,而ATCC 23270上升较小,仅从最初350 mV上升到491 mV.氧化还原电位的变化说明从广东梅山分离得到的菌株M1在浸矿体系中亚铁氧化活性比ATCC 23270更高.菌株M1比长期实验室培养的标准菌株ATCC 23270更适合当地矿物的微生物浸出,因而在生物浸出工艺中,应考虑采用分离或富集当地原生菌株来进行浸矿.     

Photoperiod and Vernalization Responses in Triticum turgidumxT. tauschii Synthetic Hexaploid Wheats

Studies of synthetic hexaploid wheat developed from Triticumturgidum(AABB genomes) and T. tauschii(DD genome) can provideinformation on potentially useful characters in T. tauschiiand/or T. turgidum for genetic improvement of hexaploid wheat(T. aestivum). Synthetic hexaploid wheats and the T. turgidumand T. tauschii parents were assessed for their developmentalresponses to photoperiod and vernalization for days to ear emergence,final leaf number and the number of spikelets per spike. Theresponses to photoperiod and vernalization of the synthetichexaploids were generally intermediate between those of theparents but in some instances the levels of expression exhibitedby the T. tauschii or T. turgidum parents were epistatic inthe synthetic hexaploids. The relatively strong photoperiodresponse of the T. tauschii accessions was not expressed inthe synthetic hexaploids, but rather the synthetic hexaploidsreflected the photoperiod response of the respective T. turgidumparents. The synthetic hexaploids had vernalization responsesstronger than those of the T. turgidum and bread wheats usedin the study. The expression of ear emergence in response tovernalization of these synthetic hexaploids appeared to be modifiedby the T. turgidum parent. Copyright 2001 Annals of Botany Company Photoperiod, synthetic hexaploids, Triticum aestivum, Triticum tauschii, Triticum turgidum, vernalization     

Quality Traits, Carbon Isotope Discrimination and Yield Components in Wild Wheats

Seventy-one wild and primitive diploid accessions of the S-,A- and D-genome species of Aegilops and Triticum, one tetraploidwheat, T. turgidum L. var. durum Desf., ‘Mexicali’,and two hexaploid wheats, T. aestivum L., ‘Anza’and ‘Yecora Rojo’ were evaluated and compared forprotein and lysine contents, carbon isotope discrimination,and various agronomic traits in the 1987–88 season underfield conditions. Significant variability was observed amongthe 71 accessions and among the three genomes for all traits.For most characters, the D-genome species exhibited the mostvariation, followed by the A- and S-genome species. Aegilopssquarrosa, T. urartu, and T. boeoticum showed large variationfor harvest index. Large variation for grain yield was exhibitedby Ae. squarrosa, Ae. sharonensis and Ae. longissima, whichcould be exploited in hybridization and breeding programs withmodern cultivars. The mean protein and lysine values of thediploids were significantly higher than those of the moderncultivars. The S- and A-genome accessions had higher proteinand lysine contents than the D genome. Among genomes, the meanvalues for yield and harvest index were significantly greaterin S- and D-genome accessions than in the A-genome accessions. The correlation pattern between yield and quality traits wasdifferent in the three genomes. Superior accessions with regardto both grain yield and quality traits were identified in eachspecies studied, except Ae. longissima and Ae. sharonensis.The advantages and uses of these accessions in wheat breedingprograms are discussed. Aegilops spp, Triticum spp, protein and lysine contents, yield components, carbon isotope discrimination