Morphometry,biogeography and ecology of Calcidiscus and Umbilicosphaera in the South Atlantic

Here we present morphometrical evaluation, biogeographical distribution patterns and ecological information for five coccolithophore taxa (Calcidiscus leptoporus, C. leptoporus small, C. quadriperforatus, Umbilicosphaera foliosa and U. sibogae). This information is based on data obtained from surface sediments from the South Atlantic. The three Calcidiscus taxa can easily been distinguished by a combination of size and qualitative characters of their distal shields. Mostly encountered in the temperate to sub-polar regions C. leptoporus is the most abundant taxon and exhibits a negative correlation to temperature and salinity. Both, C. leptoporus small and C. quadriperforatus reach their maximum abundances also at higher latitudes and in the SW-African upwelling area. Their distributions therefore suggest preference for nutrient-enriched waters, which is also indicated by CCA. The two circular Umbilicosphaera species exhibit significant differences in coccolith morphology and show little overlap in size. Highest abundances are encountered in sub-tropical latitudes and are mainly derived from U. sibogae. In contrast, U. foliosa is present in very low abundances. Both species exhibit a preference for warm and oligotrophic conditions. However, U. foliosa increases in relative proportion to U. sibogae at the southernmost locations and in the Benguela upwelling. This could be interpreted as an affinity for slightly cooler and nutrient-enriched environments.     

The Kromdraai early hominin-bearing site. A review of recent findings

The Kromdraai archaeological site is located in a fossiliferous paleokarst situated in the UNESCO World Heritage Site referred to as the “Cradle of Humankind” in the Gauteng Province of South Africa. Kromdraai is noteworthy because it features among the three southern African early hominin-bearing sites considered to represent distinct temporal periods within the same stratigraphic succession. Kromdraai also yielded a partial skull and dentition (TM 1517) in 1938 that was designated as the holotype of a new genus and species, Paranthropus robustus. Although the hominin fossil assemblage collected from Kromdraai between 1938 and 2014 is rather paltry, morphometric and cladistic analyses of this material suggested that it represented a somewhat less-derived form of P. robustus than the considerably larger assemblage from the nearby site of Swartkrans. However, the geochronological and biotic relationships among the P. robustus-bearing sites in South Africa are not resolved. Since 2014, the previously unknown, albeit densely fossiliferous Unit P produced 51 individually catalogued hominin fossils (36 craniodental and 15 postcranial) that currently represent 13% of the faunal assemblage from this unit with a minimum number of 10 juvenile and 9 adult individuals. P. robustus and early Homo coexisted at the time of the accumulation of Unit P at Kromdraai, with a relative abundance of 89% and 11%, respectively. P. robustus and early Homo are associated with a highly diverse fauna that includes several water-dependent species, and a large variety of bovid and carnivore taxa. Biochronological data from Unit P and an interval of reversed polarity measured in younger deposits above it are interpreted in the context of the regional chronological framework to infer that it represents a deposit that was likely accumulated prior to 2 Ma.     

Prolagus italicus n. sp. (Ochotonidae, Lagomorpha), a new Pliocene species of peninsular Italy

Prolagus italicus n. sp., a new endemic Pliocene species of peninsular Italy, is described here, adding new details to the knowledge of this widespread and long-lasting ochotonid genus. Several dental morphodimensional characters suggest a close relationship between P. italicus and P. sorbinii (evaporitic and postevaporitic Messinian, central Italy). On the other hand, P. italicus shares with other Plio-Pleistocene Prolagus species of continental Europe a large size and some peculiar characters of dental occlusal surface. Actually, an evolutionary trend can be detected in Plio-Pleistocene species of the genus Prolagus. The value of P. italicus in biochronology is quite consistent, as this species seems to mark MN17 in central Italy. Moreover, some morphodimensional differences between P. italicus populations have been identified: this can help to infer relative chronological positions to the fossil sites in which P. italicus is present. Some morphological characters present in one of the two available P. italicus populations are apparently related to ecological more than to evolutionary factors: this may be a starting point for in-depth palaeoecological studies related to the genus Prolagus. The presence of P. italicus in the Italian peninsula may have prevented the entrance of other species of western European affinity.     

Corynebacterium antarcticum sp. nov., Corynebacterium marambiense sp. nov., Corynebacterium meridianum sp. nov., and Corynebacterium pygosceleis sp. nov., isolated from Adélie penguins (Pygoscelis adeliae)

A taxonomic study was conducted on 16 bacterial strains isolated from wild Adélie penguins (Pygoscelis adeliae) from Seymour (Marambio) Island and James Ross Island. An initial screening by repetitive sequence-based PCR fingerprinting divided the strains studied into four coherent groups. Phylogenetic analysis based on 16S rRNA gene sequences assigned all groups to the genus Corynebacterium and showed that Corynebacterium glyciniphilum and Corynebacterium terpenotabidum were the closest species with 16S rRNA gene sequence similarities between 95.4 % and 96.5 %. Further examination of the strains studied with ribotyping, MALDI-TOF mass spectrometry, comprehensive biotyping and calculation of average nucleotide identity and digital DNA–DNA hybridisation values confirmed the separation of the four groups from each other and from the other Corynebacterium species. Chemotaxonomically, the four strains P5828^T, P5850^T, P6136^T, P7210^T representing the studied groups were characterised by C_16:0 and C_18:1 ω9c as the major fatty acids, by the presence of meso-diaminopimelic acid in the peptidoglycan, the presence of corynemycolic acids and a quinone system with the predominant menaquinone MK-9(H₂). The results of this study show that the strains studied represent four new species of the genus Corynebacterium, for which the names Corynebacterium antarcticum sp. nov. (type strain P5850^T = CCM 8835^T = LMG 30620^T), Corynebacterium marambiense sp. nov. (type strain P5828^T = CCM 8864^T = LMG 31626^T), Corynebacterium meridianum sp. nov. (type strain P6136^T = CCM 8863^T = LMG 31628^T) and Corynebacterium pygosceleis sp. nov. (type strain P7210^T = CCM 8836^T = LMG 30621^T) are proposed.     

Reassessment of species distribution and occurrence of mud crab (Scylla spp., Portunidae) in Malaysia through morphological and molecular identification

This study utilized genetic and morphometric approaches to assess the molecular and morphometric differentiation among commercially important species of mud crab. Molecular investigations were derived from 542 bp mitochondrial DNA COI on 249 individuals within genus Scylla from nine states in Malaysia represents four marine regions; South China Sea, Sulu Sea, Straits of Singapore and Straits of Malacca. Four specimens were obtained from Indonesia to give a robust analysis in this study. For species delimitation, Automatic Barcode Gap Discovery (ABGD) method on a web interface was employed. Analysis on phylogenetics was implemented utilizing Neighbour joining (NJ) and Maximum Parsimony (MP) methods. The inter- and intraspecies genetic distances (D_s) was computed using Kimura 2-parameter distance and executed in MEGA version 5.05. All samples were genetically and morphologically identified and clustered into four distinct species. Among the species, S. olivacea was the most abundant (n = 111), on the other hand the occurrence of S. paramamosain in Malaysia was very low (n = 29). No single individual of S. serrata from Malaysia was recorded in this study. Both genetic distance and phylogenetic approaches exhibited a correlative monophyletic association among all specimens analysed. This present study is crucial as it reports the reassessment of all species within genus Scylla in Malaysia, eventually could be employed as a reference source for subsequent research mainly on mariculture and other conservation efforts for the species.     

Deep-water brachiopod assemblage from the Middle Miocene of Kralice nad Oslavou,Moravia, southeastern Czech Republic

Eight brachiopod species, i.e. Novocrania sp., Cryptopora lovisati (Dreger, 1911), “Terebratula” sp., Megathiris detruncata (Gmelin, 1791), Argyrotheca cuneata (Risso, 1826), Joania cordata (Risso, 1826), Megerlia truncata (Linnaeus, 1767), and Platidia anomioides (Scacchi and Philippi, 1844), have been identified in the Middle Miocene deposits of Kralice nad Oslavou, Moravia, Czech Republic. The species C. lovisati and P. anomioides dominate the studied assemblage, while others are very rare. Novocrania, C. lovisati and M. truncata are reported for the first time from the Moravian part of the Carpathian Foredeep. In species composition, the assemblage from Kralice resembles other Middle Miocene Paratehyan assemblages, interpreted as shallow water, but the dominance of C. lovisati and P. anomioides makes it clearly different, indicating an environment deeper than 100 m.     

Linkages between surface and deep circulations in the southern Japan Sea during the last 27,000 years: Evidence from planktic foraminiferal assemblages and stable isotope records

We analyzed planktic foraminiferal assemblages, oxygen and carbon isotope records, and the presence or absence of laminations to reconstruct the paleoenvironments of the southern Japan Sea since the last glacial period. Data were collected from two well-dated cores. One core (water depth 999 m) included thinly laminated mud layers, the other (water depth 283 m) contained nonlaminated sediments. Tephrochronology and accelerator mass spectrometry ¹⁴C dating of 14 horizons revealed that the two cores contained continuous records of the last 27 cal kyr. A total of 13 planktic foraminiferal species belonging to six genera were identified in down-core samples. The typical indicators of the Tsushima Current water, Globigerinoides ruber, Neogloboquadrina dutertrei, Pulleniatina obliquiloculata, Globigerinoides tenellus, and Globigerinita glutinata occurred since 9.3 cal kyr BP. Neogloboquadrina incompta, which was the dominant species in the Tsushima Current region of the modern Japan Sea, first occurred at 8.2 cal kyr BP and dominated the assemblage since 7.3 cal kyr BP. These results clearly indicate that the warm Tsushima Current started to inflow into the Japan Sea at 9.3 cal kyr BP, and the modern surface conditions in the southern Japan Sea were essentially established at 7.3 cal kyr BP. Our data and comparison of the presence or absence of laminated sediments in three locations from the southern Japan Sea suggest that deep circulation during the deglacial period was weaker than that at present. In addition, deep circulation in the modern Japan Sea, which supplies oxygen-rich water to the entire basin, started probably in association with the first inflow of the Tsushima Current beginning at 9.3 cal kyr BP.     

Desmaninae (Talpidae, Mammalia) from the Pliocene of Tollo de Chiclana (Guadix Basin, Southern Spain): Considerations on the phylogeny of the genus Archaeodesmana

The fossil Desmaninae (water-moles) from the Pliocene continental deposits of Tollo de Chiclana (Guadix Basin, Southern Spain) are described. A new species, Archaeodesmana elvirae, is defined from the locality of Tollo de Chiclana-1 (upper Ruscinian). This species is characterized by relatively small canines and premolars (except the P4) and large P4 and molars, besides several morphological features. The presence of Archaeodesmana brailloni is reported from the locality of Tollo de Chiclana-1B (uppermost Ruscinian). A small sample assigned to the genus Archaeodesmana is described from the lower Villafranchian site of Tollo de Chiclana-3, which cannot be determined at the specific level. The phylogenetic relationships between the different species of Archaeodesmana are reconsidered in the light of the recent findings, which support the idea of a more complex phylogeny than previously proposed for this genus. The populations from the Guadix Basin, previously assigned to Dibolia dekkersi (= Archaeodesmana getica), are here considered to belong to a different (unnamed) species, which is the ancestor of A. elvirae. On the other hand, the new species A. elvirae is proposed as the ancestor of A. brailloni.     

Gymnodinium litoralis sp. nov. (Dinophyceae), a newly identified bloom-forming dinoflagellate from the NW Mediterranean Sea

Recurrent high-biomass blooms of a gymnodinioid species have been periodically recorded at different sites in the NW Mediterranean Sea (Catalan and Sardinian coast), causing intense discolorations of the water. In this study, several strains of the causative organism were isolated and subsequently studied with respect to the morphology of the vegetative cells and different life cycle stages, pigments profile, and molecular phylogeny. Based on phylogenetic analyses, the strains were placed within the Gymnodinium sensu stricto clade. The species possessed a horseshoe-shaped apical groove running anticlockwise around the apex and the major accessory pigment was identified as peridinin. These characteristics place the organism within the Gymnodinium genus, as defined today, although some other characteristics, such as vesicular chambers in the nuclear envelope and a nuclear fibrous connective were not observed. Morphologically, the isolates highly resemble Gyrodinium vorax (Biecheler) but major differences with the latter suggest that they comprise a new species, Gymnodinium litoralis sp. nov. The resting cyst of this species is described herein from field samples of the Catalan and Sardinian coast; pellicle cysts were observed in field samples and also in cultures. This species recurrently produces high biomass blooms (>10⁶ cell L⁻¹) in summer along several beaches and coastal lagoons in the NW Mediterranean Sea (L’Estartit, La Muga River mouth, and Corru S’Ittiri). Knowledge about its geographic distribution is limited, since the precise identification of G. litoralis from the field or fixed samples can be difficult. Therefore we expect that molecular studies will reveal a much wider distribution of the species.     

Phylogenetic relationships of Cochlodinium polykrikoides Margalef (Gymnodiniales,Dinophyceae) from the Mediterranean Sea and the implications of its global biogeography

Although the diversity of dinoflagellates has been intensively studied in several locations in the Mediterranean Sea since the 1950s, it is only during the last two decades that the morphotype of the toxic unarmoured dinoflagellate Cochlodinium polykrikoides Margalef has been detected, coinciding with its apparent worldwide expansion in marine coastal waters. In this study, vegetative cells of C. polykrikoides morphotype from the Catalan coast (NW Mediterranean Sea) were detected and isolated, and the DNA from collected cells was sequenced. While in the Mediterranean Sea, detections are scarce and C. polykrikoides is consistently present at low concentrations, we reported exceptional blooms of this species, in which the maximum abundance reached 2 × 10⁴ cells L⁻¹. Partial LSU rDNA region sequences showed that most C. polykrikoides populations from the Catalan coast formed a new differentiated ribotype, but others were included within the ‘Philippines’ ribotype, demonstrating their coexistence in the Mediterranean Sea. Thus, the current biogeographic nomenclature of the ribotypes is likely to be invalid with respect to the available information from populations comprising the ‘Philippines’ ribotype. The phylogeny suggests the existence of cryptic species that should be evaluated for species-level status. Accordingly, the ribotype determination must be carefully evaluated for all detections and bloom events, since accurate characterization of the morphology, ecophysiology and distribution of the ribotypes are not well resolved.     

The heteromorph ammonite genus Ammonitoceras Dumas, 1876 (Ancyloceratidae) in the lower Aptian (Lower Cretaceous) of the Les Ferres Aptian Basin (southeastern France)

Ammonitoceras Dumas, 1876 is a genus of heteromorph ammonites characterized by the presence of a peculiar ontogenetic stage in its inner whorls: the Ammonitoceras stage. But in spite of its wide paleogeographic and biostratigraphic extension throughout the Aptian (Lower Cretaceous), this genus remains poorly known. In the present work we study specimens of Ammonitoceras from the lower Aptian Deshayesites multicostatus (Deshayesites deshayesi Zone) to Dufrenoyia furcata (Dufrenoyia furcata Zone) subzones of the Les Ferres Aptian Basin (southeastern France). The results are as follows: (1) representatives of Ammonitoceras from this area are regarded dimorphic with criocone macroconchs and ancylocone microconchs, (2) their ontogenetic sequence is described, (3) their intraspecific variability is significant and concerns the adult size and the duration of the ontogenetic stages, especially the Ammonitoceras stage, (4) two species are recognized: the earlier Ammonitoceras ucetiae Dumas, 1876, characterized by a brief Ammonitoceras stage on average, and the latter Ammonitoceras lahuseni (Sinzow, 1906), characterized by a longer Ammonitoceras stage on average. The sample of the Deshayesites grandis Subzone (Deshayesites deshayesi Zone) is composed of specimens too fragmentary to be identified at species level.     

Upwelling and eddies affect connectivity among local populations of the goldeye rockfish,Sebastes thompsoni (Pisces,Scorpaenoidei)

The goldeye rockfish, Sebastes thompsoni, commercial rockfish catch in the Northwest Pacific Ocean, may influence its population structure. To clarify the population genetic structure of Korean S. thompsoni and its degree of hybridization with the most close species, Sebastes joyneri, we analyzed a mitochondrial (mt) DNA control region and eleven polymorphic microsatellite (ms) loci. S. joyneri individuals were clearly distinguished from S. thompsoni by the mtDNA control region and ms loci results, with single interspecific hybridization between two species suggesting no impact on genetic structure of S. thompsoni. Analysis of mtDNA revealed no population structure within S. thompsoni, suggesting the survival of a single population in southern refugia during the glacial period. The ms loci results, in contrast, showed two genetically distinct clusters within S. thompsoni: One was predominant throughout Korean coasts (from the Yellow Sea, via the Korea Strait to the East Sea); the other was predominant at Dokdo Island in the East Sea; and both occurred in similar ratios at Wangdolcho Reef in the East Sea. A possible factor that restricts gene flow between Korean coastal and offshore populations in the East Sea may be related to the complex oceanic current patterns such as eddies and upwelling, which represent impermeable barriers to population connectivity for this species. Our findings highlight that these two populations might be representative of two separate stock within Korean waters and maintain their geographically related genetic structure.     

Genetic analysis of the populations of Japanese anchovy Engraulis japonicus from the Yellow Sea and East China Sea based on mitochondrial cytochrome b sequence

Japanese anchovy Engraulis japonicus was not only a commercial species but also a key link in the marine food chain in the Yellow Sea and East China Sea. However, in recent years, E. japonicus experienced a deep recession caused by over fishing. Therefore, determination of population genetic structure is essential to underpin resource recovery and to aid delineating and monitoring populations for fishery management. In this study, sequence variation of a 402-bp fragment of mitochondrial cytochrome b (cyt b) gene from ten populations of E. japonicus in the Yellow Sea and East China Sea was determined, detecting 73 haplotypes. Haplotype diversities and nucleotide diversities for the ten populations ranged from 0.4706 ± 0.1177 (D) to 0.9935 ± 0.210 (WH), and from 0.0014 ± 0.0013 (D) to 0.0090 ± 0.0053 (WH), respectively. Analysis of molecular variance (AMOVA) showed no significant differences at all hierarchical levels, and almost all F_ST values were non-significant, indicating no significant population genetic structure in the Yellow Sea and East China Sea. Two indistinct clades with low support values were detected and the analysis of haplotype frequency distribution showed no significant geographic differences among populations. These results supported the null hypothesis that E. japonicus within the Yellow Sea and East China Sea constituted a panmictic mtDNA gene pool. Based on the present study, the existence of separate genetic stocks in the Yellow Sea and East China Sea were not detected. Strong dispersal capacity of planktonic larvae, and ocean current could be the reasons for genetic homogeneity in this species in the Yellow Sea and East China Sea.     

Ecosystem indicators: Foraminifera,Thecamoebians and Diatoms from the Ologe Lagoon,Nigeria

The Ologe Lagoon in southwestern Nigeria is a natural habitat located closely to both residential and industrial estates. The lagoon is heavily affected by effluents of agricultural and industrial runoff including organochlorine compounds and heavy metals (chloropesticides, DDT and polychlorinated biphenyls, cadmium, manganese, zinc, copper, lead, iron and nickel). Ologe Lagoon is situated in a semi-isolated position and its brackish waters traverse several creeks and lagoons before it reaches the Atlantic Ocean. The lagoon experiences minor tidal but noticeable salinity and pH variations during the rainy season. During the dry season, however, the waters have a comparatively long resident time where sediments act as sink and aggregate contaminants over time. Investigations on benthic foraminifera, thecamoebian and diatom species were carried out to document the current status, composition, spatial distribution, and response of microfaunal assemblages to environmental stressors within the lagoon. The benthic foraminifer assemblage is composed of four highly specialized agglutinated species of Ammotium salsum, Miliammina fusca, Ammobaculites dilatatus and Ammobaculites aff. A. exiguus. They are present at all sample sites with varying abundances. The high abundance of Ammotium salsum is considered an indication of environmental stress. Thecamoebian species of Difflugia oblonga, Difflugia proteiformis and Pontigulasia compressa were also recorded in varying proportions and generally represent less than one percent of the total foraminifera/thecamoebian assemblage. The presence of marine brackish water larger siliceous diatoms of Actinoptychus and Campylodiscus species indicates an interaction between the lagoon and the marine waters although on the minimal scale with regards to actual salinity ranges. The faunal assemblages recovered are characterized by low species richness and alpha diversity indices and are typical of shallow, marginal-marine hyposaline environments. Numerical abundances and spatial distribution patterns suggest taxon-specific habitat preferences and highlight their potential for environmental monitoring studies.     

Extant silicoflagellates from the Northeast Aegean (eastern Mediterranean Sea): Morphologies and double skeletons

Silicoflagellate abundance, vertical distribution and morphology were studied during spring (March 2014) at three sampling stations located in the Northeast Aegean Sea adjacent to the Dardanelles Strait and characterized by a variable influx of cold, low-salinity Black Sea water. The silicoflagellate assemblage was dominated by Dictyocha stapedia and Stephanocha speculum with minor contribution of D. aculeata and Octactis pulchra. While specimens of D. stapedia were represented by the typical morphologies described in other areas of the Mediterranean Sea, populations of S. speculum displayed peculiar characters: they were large, predominantly 7-sided, with a small apical ring as well as apical ring spines, concave basal ring sides and non-rotated apical structure. Some of these features have been described for S. speculum at high latitudes, but the combined characters make these specimens slightly different from the high latitude populations. Similar morphologies have been observed in the western Black Sea, thus we can infer that the peculiar specimens detected in the Northeast Aegean are associated with the influx of Black Sea water masses.     

Phylogenetic position of two Patagonian Cibicididae (Rotaliida, Foraminifera): Cibicidoides dispars (d’Orbigny, 1839) and Cibicidoides variabilis (d’Orbigny, 1826)

Cibicidoides dispars and Cibicidoides variabilis are two neritic cibicidids commonly found on the Patagonian coasts. Phylogenetic analyses of partial SSU rDNA sequences show that they both belong to the genus Cibicidoides. Cibicidoides dispars branches close to Cibicidoides wuellerstorfi, whereas C. variabilis clusters with Cibicidoides pachyderma. In both cases, species clustering together are well separated morphologically and ecologically but close genetically. Molecular data indicate clearly that C. dispars and C. variabilis are well separated genetically from Cibicidoides lobatulus, another shallow water cibicidid sharing a similar ecology and morphology. Moreover, our molecular results show that neritic and bathyal or abyssal species are found together in different clades, suggesting multiple colonization events from shallow to deep water or vice versa. The analysis of more variable ITS rDNA region, on the other hand, reveals small differences between individuals of C. variabilis sampled in the south and north of Chilean Patagonia, which could indicate a cryptic speciation undergoing in this species.     

Palaeoreas,Majoreas, and Stryfnotherium gen. nov. (Mammalia: Artiodactyla: Bovidae) from the Late Miocene of Greece

A new comparative study of the two crania, LGPUT RZO-03 and LGPUT RZO-68 attributed to Palaeoreas zouavei Bouvrain, 1980 from the Late Miocene of Axios Valley, Greece reveals great morphological and metric differences between them, which require the exclusion of LGPUT RZO-68 from this species and even from Palaeoreas Gaudry, 1861. This decision leaves unsupported many diagnostic features of P. zouavei applied by previous authors and along with recent data from Bulgaria put in doubt the validity of P. zouavei as a whole. As a result, the genus Palaeoreas is re-defined as monotypic and the cranial morphometric changes of P. lindermayeri (Wagner, 1848) are discussed on a temporal basis. An updated taxonomic analysis confirms the presence of P. lindermayeri in the Late Turolian mammal assemblage of Dytiko-1 (Axios Valley, Greece) but rejects its occurrence at Dytiko-2. Instead, a re-examination of old cranial specimens and a study of new ones suggest the presence in both sites of Majoreas Kostopoulos, 2004 a Late Miocene taxon previously mostly known from the eastern banks of the Aegean Sea. A reassessment of the LGPUT RZO-68 cranium, and its comparison with Palaeoreas and Criotherium Forsyth-Major, 1891, suggests that it deserves taxonomic distinction at genus and species levels: Stryfnotherium exophthalmon.     

Alteromonas flava sp. nov. and Alteromonas facilis sp. nov., two novel copper tolerating bacteria isolated from a sea cucumber culture pond in China

Two bacterial strains, P0211^T and P0213^T, were isolated from a sea cucumber culture pond in China. The strains were able to resist high copper levels. These two strains were characterized at the phenotypic, chemotaxonomic, and genomic level. They were completely different colors, but the 16S rRNA genes showed 99.30% similarity. Phylogenetic analysis based on the sequences of the 16S rRNA gene and five housekeeping genes (dnaK, sucC, rpoB, gyrB, and rpoD) supported the inclusion of these strains within the genus Alteromonas, and the two isolated strains formed a group separated from the closest species Alteromonas aestuariivivens KCTC 52655^T. Genomic analyses, including average nucleotide identity (ANIb and ANIm), DNA–DNA hybridization (DDH), and the percentage of conserved proteins (POCP), clearly separated strains P0211^T and P0213^T from the other species within the genus Alteromonas with values below the thresholds for species delineation. The chemotaxonomic features (including fatty acid and polar lipid analysis) of strains P0211^T and P0213^T also confirmed their differentiation from the related taxa.The results demonstrated that strains P0211^T and P0213^T represented two novel species in the genus Alteromonas, for which we propose the names Alteromonas flava sp. nov., type strain P0211^T (= KCTC 62078^T = MCCC 1H00242^T), and Alteromonas facilis sp. nov., type strain P0213^T (= KCTC 62079^T = MCCC 1H00243^T).     

Live and dead benthic foraminiferal assemblages from coastal environments of the Aegean Sea (Greece): Distribution and diversity

Benthic foraminiferal composition assemblages and their temporal changes, ecological indices and foraminiferal densities are used to compare three coastal environments with different physicogeographical features in the Aegean Sea (coastal environment of Avdira–Vistonikos Gulf and Kitros–Thermaikos Gulf and open lagoonal environment of Vravron–South Evoikos Gulf). Three main foraminiferal assemblages have been recognized: a) “Assemblage A”; high degree of similarity between living and dead foraminiferal species, dominated by Ammonia beccarii, Elphidium spp. and relatively abundant and diverse miliolids, b) “Assemblage B1”; intermediate degree of similarity between live and dead assemblages, characterized by highly-abundant and well-diversified foraminiferal assemblages including the algal symbiont bearing Peneroplis pertusus together with Ammonia tepida and several small epiphytic rotaliids and miliolids, and c) “Assemblage B2”; absence of living individuals, strongly dominated by the opportunistic species A. tepida. Our results suggest a good comparison between living and dead assemblages from different coastal environments in the Aegean Sea, however the prevailing environmental conditions (vegetation cover, hydrodynamics, fresh water influx) have a strong impact on the taphonomic processes.