The Response of Bean Plants to UV-B Radiation Under Different Irradiances of Background Visible Light

Plants of Phaseolus vulgaris L. (cv. Stella) were grown in controlledconditions under three different irradiances of visible lightwith or without UV-B (280–320nm) radiation. The biologicallyeffective UV-B radiation (UV-B_BE) was 6.17 kJ m^–2 d^–1,and simulated a c. 5% decrease in stratospheric ozone at 55.7?N,13.4?E. The photon flux densities of the photosyntheticallyactive radiation (PAR, 400–700 nm) were either 700 µmolm^–2–1 (HL), 500, µmol m^–2 s^–1(ML) or 230 µmol m^–2 s^–1 PAR (LL). Under highlight (HL) conditions plus UV-B radiation, bean plants appearedmost resistant to the enhanced levels of UV-B radiation, andresponded only by increasing leaf thickness by c. 18%. A smallincrease in UV screening pigments was also observed. Both thelower irradiances (ML and LL) increased the sensitivity of theplants to UV-B radiation. Changes in leaf structure were alsoobserved. Photosystem II was inhibited under ML and LL togetherwith UV-B radiation, as determined by Chi fluorescence inductionand calculation of the fluorescence half-rise times. Leaf reflectivitymeasurements showed that the amount of PAR able to penetrateleaves of UV-B treated plants was reduced, and that a possiblecorrelation may exist between the reduced PAR levels, loss ofChi and lowered photosynthetic activity, especially for LL +UV-Bgrown plants, where surface reflection from leaves was highest.Changes in leaf chlorophyll content were mostly confined toplants grown under LL + UV-B, where a decrease of c. 20% wasfound. With regard to protective pigments (the carotenoids andUV screening pigments) plants subjected to different visiblelight conditions responded differently. Among the growth parametersmeasured, there was a substantial decrease in leaf area, particularlyunder LL + UV-B (c. 47% relative to controls), where leaf dryweight was also reduced by c. 25%. Key words: Chlorophyll fluorescence induction, bean, flavonoids, Phaseolus vulgaris, reflectance, UV-B radiation     

Construction and Use of a Nonradioactive DNA Hybridization Probe for Detection of Pseudomonas syringae pv. Tomato on Tomato Plants

Pseudomonas syringae pv. tomato, the causal agent for bacterial speck of tomato, produces the phytotoxin coronatine. A 5.3-kilobase XhoI fragment from the chromosomal region controlling toxin production was cloned into the plasmid pGB2, and the resulting recombinant plasmid, pTPR1, was tested for its ability to serve as a diagnostic probe for P. syringae pv. tomato. In a survey of 75 plant-associated bacteria, pTPR1 hybridized exclusively to those strains that produced coronatine. The detection limit for this probe, which was labeled with the Chemiprobe nonradioactive reporter system, was approximately 4 × 10³ CFU of lesion bacteria. During the 1989 growing season, a total of 258 leaf and fruit lesions from nine tomato fields were screened for P. syringae pv. tomato by using pTPR1 and the culture method of detection. The best agreement between the two methods, 90%, occurred early in the season with samples taken from relatively young (5-week-old) plants. Young plants also had a higher percentage of P. syringae pv. tomato-positive lesions. P. syringae pv. tomato was the only coronatine producer recovered from the nine tomato fields. All 244 P. syringae pv. tomato strains isolated during this study reacted strongly with the probe. The P. syringae pv. tomato population of healthy field tomato leaves was determined by a pTPR1 colony hybridization procedure. Every probe-positive colony that was isolated and characterized was identified as P. syringae pv. tomato. The pTPR1 probe should expedite disease diagnosis and facilitate epidemiological studies of this pathogen. It also should aid in screening transplant seedlings for bacterial speck infestation.     

Effects of CO2-Enrichment on the Growth of Young Tomato Plants in Low Light

Carbon dioxide-enrichment of young tomato plants grown in controlled-environmentcabinets at low light intensity (14 cal cm^–2 day^–1,visible radiation) increased their net assimilation rates and,initially, relative growth-rates. Subsequently, the relativegrowth-rate fell to near the rate of non-enriched plants, owingto a fall in leaf-area ratio associated with an increase inleaf dry weight/area. Sowing non-enriched plants a few daysearlier to reach the same total dry weight would not have producedidentical plants. The effects of CO₂-enrichment to 1000 vpm could be simulatedby increasing light intensity by approximately one third exceptthat the plants had shorter internodes than those in extra CO₂.This was a morphogenetic effect of light since CO₂-enrichmentitself produced slightly shorter plants than controls for anequivalent total dry weight. CO₂-enrichment did not change the dry-weight distribution inthe plants and had little effect on rate of leaf produoctionor the number of flower primordia. There were no indicationsthat beneficial effects of CO₂-enrichment operated other thanthrough increased photosynthesis.     

The Effect of an Incandescent Supplement on the Growth of Tomato Plants in Low Light

Young tomato plants were grown at low light flux densities (21W m^-2 for 8 h days) in growth cabinets under three types offluorescent lamps or under a fluorescent/incandescent mixedsource. Whilst net assimilation rates under the fluorescentlamps were in agreement with those calculated from the lampcharacteristics and the photosynthetic action spectrum, therate under the mixed source was about 20 per cent higher thanexpected. Relative growth rates and relative leaf area growthrates were also higher and leaf area ratios lower under thefluorescent/incandescent lamp combination than under the purefluorescent sources. Small differences in stem elongation, leaftemperature and dry weight distribution which were associatedwith the addition of incandescent radiation were not consideredto be responsible for these increases. When the light flux densityfrom the mixed source was reduced by 20 per cent, the plantgrowth parameters were then similar to those in fluorescentlight alone.     

Detection of Transgenes in Crop Plants Using Molecular Beacon Assays

Molecular beacons are oligonucleotide probes that form a stem-and-loop structure and possess an internally quenched fluorophore. When they bind to complementary targets, they undergo a conformational transition that turns on their fluorescence. These probes recognise their targets with higher specificity than linear probes and can easily discriminate targets that differ from one another by a single nucleotide. As a model system to test the applicability of molecular beacons in crop plants, we have designed a molecular beacon to detect the bar transgene in barley. Results from this experiment indicate that molecular beacons can be successfully employed in detecting transgenes, simultaneously combining the benefits of being highly reproducible and sensitive. The molecular beacon assay is suitable for diagnostics, simultaneously being employed in the development of rapid DNA-based assays for analysing single nucleotide polymorphisms (SNPs).     

A Femtosecond Visible/Visible and Visible/Mid-Infrared Transient Absorption Study of the Light Harvesting Complex II

Light harvesting complex II (LHCII) is the most abundant protein in the thylakoid membrane of higher plants and green algae. LHCII acts to collect solar radiation, transferring this energy mainly toward photosystem II, with a smaller amount going to photosystem I; it is then converted into a chemical, storable form. We performed time-resolved femtosecond visible pump/mid-infrared probe and visible pump/visible probe absorption difference spectroscopy on purified LHCII to gain insight into the energy transfer in this complex occurring in the femto-picosecond time regime. We find that information derived from mid-infrared spectra, together with structural and modeling information, provides a unique visualization of the flow of energy via the bottleneck pigment chlorophyll a604.     

Automatic Detection and Classification of Ca2+ Release Events in Line- and Frame-Scan Images

Analysis of Ca²⁺ signals obtained in various cell types (i.e., cardiomyocytes) is always a tradeoff between acquisition speed and signal/noise ratio of the fluorescence signal. This becomes especially apparent during fast two- or three-dimensional confocal imaging when local intracellular fluorescence signals originating from Ca²⁺ release from intracellular Ca²⁺ stores (e.g., sarcoplasmic reticulum) need to be examined. Mathematical methods have been developed to remedy a high noise level by fitting each pixel with a transient function to “denoise” the image. So far, current available analytical approaches have been impaired by a number of constraints (e.g., inability to fit local, concurrent, and consecutive events) and the limited ability to customize implementation. Here, we suggest a, to our knowledge, novel approach for detailed analysis of subcellular micro-Ca²⁺ events based on pixel-by-pixel denoising of confocal frame- and line-scan images. The algorithm enables spatiotemporally overlapping events (e.g., a Ca²⁺ spark occurring during the decaying phase of a Ca²⁺ wave) to be extracted so that various types of Ca²⁺ events can be detected at a pixel time level of precision. The method allows a nonconstant baseline to be estimated for each pixel, foregoing the need to subtract fluorescence background or apply self-ratio methods before image analysis. Furthermore, by using a clustering algorithm, identified single-pixel events are grouped into “physiologically relevant” Ca²⁺ signaling events spanning multiple pixels (sparks, waves, puffs, transients, etc.), from which spatiotemporal event parameters (e.g., full duration at half maximal amplitude, full width at half maximal amplitude, amplitude, wave speed, rise, and decay times) can be easily extracted. The method was implemented with cross-platform open source software, providing a comprehensive and easy-to-use graphical user interface enabling rapid line-scan images and rapid frame-scan image sequences (up to 150 frames/s) to be analyzed and repetitive Ca²⁺ events (Ca²⁺ sparks and Ca²⁺ puffs) originating from clusters of Ca²⁺ release channels located in the sarcoplasmic reticulum membrane (ryanodine receptors and inositol 1,4,5-trisphosphate receptors) of isolated cardiomyocytes to be examined with a high level of precision.     

Comparative Performance of Micropropagated and Seed-Grown Tomato Plants

Morphological, physiological, fruit yield and quality related traits were compared between the seed-grown and tissue-cultured plants of tomato (Lycopersicon esculentum Mill.) cv. Red Coat in a greenhouse. No significant differences were observed for any of the traits studied except for the number of leaves and branches, which were higher in the seed-grown plants than in tissue-cultured plants at the later stages of growth. No phenotypic abnormality of the tissue-cultured plants was observed suggesting that genetic fidelity of tissue cultured plants can be maintained if appropriate plant growth regulators are used with fewer member of subcultures in the multiplication medium.     

Quantitative Visualization and Detection of Skin Cancer Using Dynamic Thermal Imaging

In 2010 approximately 68,720 melanomas will be diagnosed in the US alone, with around 8,650 resulting in death ¹. To date, the only effective treatment for melanoma remains surgical excision, therefore, the key to extended survival is early detection ^2,3. Considering the large numbers of patients diagnosed every year and the limitations in accessing specialized care quickly, the development of objective in vivo diagnostic instruments to aid the diagnosis is essential. New techniques to detect skin cancer, especially non-invasive diagnostic tools, are being explored in numerous laboratories. Along with the surgical methods, techniques such as digital photography, dermoscopy, multispectral imaging systems (MelaFind), laser-based systems (confocal scanning laser microscopy, laser doppler perfusion imaging, optical coherence tomography), ultrasound, magnetic resonance imaging, are being tested. Each technique offers unique advantages and disadvantages, many of which pose a compromise between effectiveness and accuracy versus ease of use and cost considerations. Details about these techniques and comparisons are available in the literature ⁴.Infrared (IR) imaging was shown to be a useful method to diagnose the signs of certain diseases by measuring the local skin temperature. There is a large body of evidence showing that disease or deviation from normal functioning are accompanied by changes of the temperature of the body, which again affect the temperature of the skin ^5,6. Accurate data about the temperature of the human body and skin can provide a wealth of information on the processes responsible for heat generation and thermoregulation, in particular the deviation from normal conditions, often caused by disease. However, IR imaging has not been widely recognized in medicine due to the premature use of the technology ^7,8 several decades ago, when temperature measurement accuracy and the spatial resolution were inadequate and sophisticated image processing tools were unavailable. This situation changed dramatically in the late 1990s-2000s. Advances in IR instrumentation, implementation of digital image processing algorithms and dynamic IR imaging, which enables scientists to analyze not only the spatial, but also the temporal thermal behavior of the skin ⁹, allowed breakthroughs in the field.In our research, we explore the feasibility of IR imaging, combined with theoretical and experimental studies, as a cost effective, non-invasive, in vivo optical measurement technique for tumor detection, with emphasis on the screening and early detection of melanoma ^10-13. In this study, we show data obtained in a patient study in which patients that possess a pigmented lesion with a clinical indication for biopsy are selected for imaging. We compared the difference in thermal responses between healthy and malignant tissue and compared our data with biopsy results. We concluded that the increased metabolic activity of the melanoma lesion can be detected by dynamic infrared imaging.     

Sensitive Detection of Phosphorus Deficiency in Plants Using Chlorophyll a Fluorescence

Phosphorus (P) is a finite natural resource and an essential plant macronutrient with major impact on crop productivity and global food security. Here, we demonstrate that time-resolved chlorophyll a fluorescence is a unique tool to monitor bioactive P in plants and can be used to detect latent P deficiency. When plants suffer from P deficiency, the shape of the time-dependent fluorescence transients is altered distinctively, as the so-called I step gradually straightens and eventually disappears. This effect is shown to be fully reversible, as P resupply leads to a rapid restoration of the I step. The fading I step suggests that the electron transport at photosystem I (PSI) is affected in P-deficient plants. This is corroborated by the observation that differences at the I step in chlorophyll a fluorescence transients from healthy and P-deficient plants can be completely eliminated through prior reduction of PSI by far-red illumination. Moreover, it is observed that the barley (Hordeum vulgare) mutant Viridis-zb⁶³, which is devoid of PSI activity, similarly does not display the I step. Among the essential plant nutrients, the effect of P deficiency is shown to be specific and sufficiently sensitive to enable rapid in situ determination of latent P deficiency across different plant species, thereby providing a unique tool for timely remediation of P deficiency in agriculture.The world population is estimated to exceed 9 billion people by 2050. This means that agriculture on a global scale has to increase food production by 70% to 100%, and, at the same time, handle the consequences of global climate changes and reduce its environmental footprint (Food and Agriculture Organization of the United Nations, 2009; Godfray et al., 2010; Foley et al., 2011). A major challenge related to this is the supply and use of phosphorus (P) to support future plant production (Cordell et al., 2009; Gilbert, 2009; MacDonald et al., 2011).P is an essential plant nutrient, which means that plants require P in adequate amounts to fulfill a complete lifecycle. It has been estimated that 30% of the world’s agricultural soils are P deficient and need fertilizer addition to ensure yield and quality (MacDonald et al., 2011). However, phosphate rock, the main source of P fertilizers, is a finite natural resource, and the known rock phosphate reserves are estimated to last as little as 50 years in the gloomiest forecasts (Gilbert, 2009; Edixhoven et al., 2013). This makes P a potential strategic natural resource similar to oil, as very few countries control the vast majority of the known reserves (Gilbert, 2009; Elser and Bennett, 2011; Edixhoven et al., 2013). Presently, an immense overuse of P is found in some parts of the world, causing eutrophication of lakes and seas, while P depletion results in severe yield limitations elsewhere (MacDonald et al., 2011; Obersteiner et al., 2013). An essential aspect of solving both of these problems is to increase P use efficiency in agriculture, thus reducing the negative environmental impact of agriculture and helping to ensure a sustainable use of P resources while increasing the worldwide food production (Schröder et al., 2011; Veneklaas et al., 2012).Here, we present a unique analytical principle based on chlorophyll a fluorescence that allows rapid, nondestructive, onsite assessment of plant P status by recording the so-called OJIP transient of a dark-adapted leaf.When a chlorophyll molecule absorbs light, one of three events will occur: The light may be used to drive photosynthesis, it can be dissipated as heat, or it can be reemitted as fluorescence. Less than 10% of light absorbed by the plant causes emission of chlorophyll a fluorescence (Govindjee, 2004; Stirbet and Govindjee, 2011). When a dark-adapted leaf is exposed to saturating actinic light, the resulting time-dependent fluorescence forms a so-called Kautsky curve (Kautsky and Hirsch, 1931; McAlister and Myers, 1940). Within 300 ms, the fluorescence increases from a minimum level (F₀) to the maximum level. If measured with a sufficiently high time resolution, a polyphasic transient with four distinct steps, designated as O, J, I, and P, is observed. After reaching maximum intensity at the P step, the fluorescence intensity declines until it reaches a steady state within a few minutes (Harbinson and Rosenqvist, 2003; Govindjee, 2004).The physiological mechanisms underlying the polyphasic OJIP transient are still not clarified, but it is believed that the J and I steps represent dynamic bottlenecks in the photosynthetic electron transport chain. The first rise (2 ms) from O to J is referred to as the photochemical phase due to its dependence on the intensity of the incoming light. This phase is assumed to reflect the reduction of the primary quinone electron acceptor in PSII (Stirbet and Govindjee, 2011). The reduction of the primary quinone electron acceptor results in a decreased electron trapping efficiency and therefore an increase in the dissipation of absorbed light energy by fluorescence and heat. The second part, from J over I to P, is called the thermal phase due to its temperature sensitivity. This phase is much slower than the first, and it is believed that the J-I phase primarily reflects a sequential reduction of the remaining plastoquinone pool of PSII and that the I-P phase reflects the subsequent electron flow through cytochrome b₆f to electron sinks at the PSI acceptor side (Stirbet and Govindjee, 2011). Thus, the OJIP transient resembles a titration of the photochemical quantum yield and reflects the complex electron transport properties of PSII and PSI.Consistent with their known influence on photosynthesis, deficiencies of essential plant nutrients such as Fe, Cu, Mg, Mn, and S have previously been shown to affect OJIP transients (Kastori et al., 2000; Mallick and Mohn, 2003; Larbi et al., 2004; Husted et al., 2009; Tang et al., 2012; Yang et al., 2012). As a consequence, several attempts have been made to identify nutrient imbalances and disorders using one or several parameters derived from the transients, but apart from Mn (Husted et al., 2009; Schmidt et al., 2013), attempts have not been successful in terms of sensitivity and specificity. This includes P, which previously has been reported to have an effect on OJIP transients, yet the reported effects seem mutually contradictory and nonspecific to P (Ripley et al., 2004; Weng et al., 2008; Jiang et al., 2009; Lin et al., 2009).Here, we present the unique finding that increasing levels of P deficiency affect the shape of the OJIP transient around the I step at 20 to 50 ms and causes the I step to gradually straighten and disappear. It is demonstrated that this effect is fully reversible and, among the essential plant nutrients, specific for P deficiency using both monocotyledons (barley [Hordeum vulgare]) and dicotyledons (tomato [Solanum lycopersicum]) plant species. Furthermore, it is shown that it is possible to determine whether a plant is P sufficient or deficient and to quantitatively predict the P concentration in leaf tissue using multivariate analysis of the OJIP transients.     

Automatic Detection of Whole Night Snoring Events Using Non-Contact Microphone

Objective

Although awareness of sleep disorders is increasing, limited information is available on whole night detection of snoring. Our study aimed to develop and validate a robust, high performance, and sensitive whole-night snore detector based on non-contact technology.

Design

Sounds during polysomnography (PSG) were recorded using a directional condenser microphone placed 1 m above the bed. An AdaBoost classifier was trained and validated on manually labeled snoring and non-snoring acoustic events.

Patients

Sixty-seven subjects (age 52.5±13.5 years, BMI 30.8±4.7 kg/m², m/f 40/27) referred for PSG for obstructive sleep apnea diagnoses were prospectively and consecutively recruited. Twenty-five subjects were used for the design study; the validation study was blindly performed on the remaining forty-two subjects.

Measurements and Results

To train the proposed sound detector, >76,600 acoustic episodes collected in the design study were manually classified by three scorers into snore and non-snore episodes (e.g., bedding noise, coughing, environmental). A feature selection process was applied to select the most discriminative features extracted from time and spectral domains. The average snore/non-snore detection rate (accuracy) for the design group was 98.4% based on a ten-fold cross-validation technique. When tested on the validation group, the average detection rate was 98.2% with sensitivity of 98.0% (snore as a snore) and specificity of 98.3% (noise as noise).

Conclusions

Audio-based features extracted from time and spectral domains can accurately discriminate between snore and non-snore acoustic events. This audio analysis approach enables detection and analysis of snoring sounds from a full night in order to produce quantified measures for objective follow-up of patients.     

荧光定量PCR技术评价亚甲蓝光化学法病毒灭活效果的研究

本研究探讨利用荧光定量PCR技术评价Sindbis病毒经亚甲蓝光化学处理后灭活效果的可行性。研究采用不同光照强度对Sindbis病毒进行亚甲蓝光化学灭活处理,并用SYBR Green I荧光定量PCR对Sindbis病毒的cDNA进行扩增,同时以细胞病变法做平行对照以测定病毒残余滴度。结果显示在亚甲蓝光化学处理过程中,随着光照强度的增强,病毒残余滴度由6.50 LgTCID50/mL逐渐降低至检测限以下,同时病毒核酸的拷贝数显著下降(P<0.05),并与病毒感染性的降低呈线性相关(R2>0.98)。以上结果表明,亚甲蓝光化学灭活法对Sindbis病毒核酸有破坏作用,病毒核酸损伤程度随光照强度的增强而增加,且与病毒感染性的降低存在相关性,提示荧光定量PCR技术评价亚甲蓝光化学法的病毒灭活效果具有可行性。     

Detection of an In Vivo 8 kD C-terminal Breakdown Product of D1-protein under Visible and UV-B Light

An 8 kD in vivo turnover product of D1 polypeptide was identified using a C-terminal specific anti-D1-antibody in thylakoids isolated from 5–10 days old seedlings of wheat (Triticum aestivum cv HD2329). Eight days old wheat seedlings grown under visible light were irradiated with UV-B (1 MW cm^?2) alone (0–5h) and Tricine SDS-PAGE was run of the isolated thylakoids. UV-B exposure of intact wheat leaves generates a fragment of 24 kD and concomitant increase in 8 kD fragment was also observed. From these results it is concluded that in wheat visible light induces the breakdown of D1 polypeptide into an 8 kD C-terminal thylakold bound fragment and UV-B stress results in an increase in 8 kD breakdown fragment, thus suggesting that visible light/UV-B has a common hot spot on D1 protein in wheat.     

定性PCR技术及卡那霉素对8个番茄品种的转基因检测

本研究利用定性PCR技术对8个不同番茄品种中外源基因35S启动子、NPTⅡ基因和NOS终止子进行检测.实验结果表明,阳性对照可以稳定扩增到预期的大小片段,而待检测品种和阴性对照则没有扩增到预期产物.利用100 mg/L的卡那霉素对8个不同番茄品种的种子进行萌发试验,再用50 mg/L的卡那霉素对番茄外植体(子叶和下胚轴)进行抗性验证,结果显示卡那霉素抗性筛选实验结果与定性PCR结果一致.本文通过对这两种检测方法的优缺点进行研究分析及比较,初步建立了一个对不同品种番茄进行转基因检测的体系.     

SARS S1基因对番茄的遗传转化与转基因番茄植株的获得

利用DNA直接导入法将含有SARS S1基因的植物表达载体pCS1导入农杆菌LBA4404中,并通过农杆菌介导的叶盘转化法得到12株再生小苗。PCR、Southern杂交检测结果证实,有6株为真正的转基因植株。