Impact of hypoxia on consumption of Baltic cod in a multispecies stock assessment context

The Baltic Sea is characterised by a heterogeneous oceanographic environment. The deep water layers forming the habitat of Baltic cod (Gadus morhua callarias L.) are subjected to frequently occurring pronounced anoxic conditions. Adverse oxygen conditions result in physiological stress for organisms living under these conditions. For cod e.g. a direct relationship between oxygen availability and food intake with a decreasing ingestion rate at hypoxia could be revealed. In the present study, the effects of oxygen deficiency on consumption rates were investigated and how these translate to stock size estimates in multi‐species models. Based on results from laboratory experiments, a model was fitted to evacuation rates at different oxygen levels and integrated into the existing consumption model for Baltic cod. Individual mean oxygen corrected consumption rates were 0.1–10.9% lower than the uncorrected ones. At the currently low predator stock size, however, the effect of oxygen‐reduced consumption on the total amount of eaten prey biomass and thus predation mortalities was only marginal. But should successful management lead to higher cod stock sizes in the future, then total predation mortalities will greatly increase and thus improved precision of these estimates would be valuable for the assessment of prey stocks.     

Analysis of stable isotope ratios to investigate stock structure of red emperor and Rankin cod in northern Western Australia

The ratios of stable isotopes ¹⁸O/¹⁶O and ¹³C/¹²C, in sagittal otolith carbonate from two tropical demersal teleosts, red emperor Lutjanus sebae and Rankin cod Epinephelis multinotatus , from several locations in northern Western Australia, differed between sites. On a broad scale, fish from the four locations, Shark Bay, Ningaloo, Pilbara, and Broome had stable isotope values that were sufficiently different to indicate separate stocks, and it is appropriate to manage these populations of the two species independently in these areas. On a smaller scale, there may be limited mixing of these species between the Pilbara trawl fishery and the trap and line fisheries operating out of Onslow and Broome. Values of stable oxygen isotopes were strongly related to sea surface temperature, although there were some sites in shallow water where low values of stable oxygen isotopes indicated that fish were living in warm water. The use of stable oxygen and carbon isotope values is a valuable, cost effective method of determining the degree of mixing of fish stocks.     

TaqMan DNA technology confirms likely overestimation of cod (Gadus morhua L.) egg abundance in the Irish Sea: implications for the assessment of the cod stock and mapping of spawning areas using egg-based methods

Recent substantial declines in northeastern Atlantic cod stocks necessitate improved biological knowledge and the development of techniques to complement standard stock assessment methods (which largely depend on accurate commercial catch data). In 2003, an ichthyoplankton survey was undertaken in the Irish Sea and subsamples of 'cod-like' eggs were analysed using a TaqMan multiplex, PCR (polymerase chain reaction) assay (with specific probes for cod, haddock and whiting). The TaqMan method was readily applied to the large number of samples (n = 2770) generated during the survey and when combined with a manual DNA extraction protocol had a low failure rate of 6%. Of the early stage 'cod-like' eggs (1.2-1.75 mm diameter) positively identified: 34% were cod, 8% haddock and 58% whiting. As previous stock estimates based on egg surveys for Irish Sea cod assumed that the majority of 'cod-like' eggs were from cod, the TaqMan results confirm that there was probably substantial contamination by eggs of whiting and haddock that would have inflated estimates of the stock biomass.     

Effects of varying natural mortality and selectivity on the assessment of eastern Baltic cod (Gadus morhua Linnaeus, 1758) stock

In 2014, the International Council for the Exploration of the Sea (ICES) was unexpectedly unable to provide an analytical assessment of eastern Baltic cod stock; factors such as data issues, assessment methodology, and the ecological situation of cod were indicated as the reasons for this failure. Some evidence suggests that the natural mortality (M) of cod could increase substantially in forthcoming years and that the selectivity could change. In this paper, age‐structured and stock‐production assessment models were applied to simulate the dynamics of cod stock; in the models, both constant and increasing natural mortalities were permitted. In the age‐structured model, the effects of selectivity related to the cod size on the cod assessment were also analysed. In addition, stock with characteristics similar to Baltic cod stock and increasing natural mortality was generated and assessed with the age‐structured model using both constant and increasing M. It was shown that models with increasing natural mortality of cod in recent years perform much better than models with constant natural mortality in terms of the distribution of residuals and retrospective patterns. The models with size‐dependent selectivity did not perform better than other standard assessments. The assessment of generated stock (where natural mortality was increasing) with constant natural mortality in the assessment model showed a poor distribution of residuals and strong retrospective patterns, similar to the ICES assessment with constant M. The conducted simulations strongly suggest that the main reason for the poor recent cod assessment is the increase in natural mortality, which is not considered in the assessment methodology.     

Metazoan parasites of Sebastes capensis from two localities in northern Chile as tools for stock identification

Examination of 290 red rockfish Sebastes capensis from two fishing grounds in northern Chile (Coquimbo 71°30' W; 30°0' S and Antofagasta 70°40' W; 23°30' S) revealed 8770 metazoan parasites, belonging to 18 taxa: Udonella caligorum (Udonellidae); Interniloculus chilensis , Paramicrocotyle sp. and Neobenedenia melleni (Monogenea); larval Gnathia sp., Cirolana sp. and Rocinela sp. (Isopoda); Helicometrina nimia , Diphtherostomum sp., Lecithochirium sp. and Pseudopecoelus sp. (Digenea); Ascarophis sebastodis , Anisakis sp. and larval Hysterothylacium sp. (Nematoda); Caligus cheilodactylus , Lepeophtheirus chilensis and Trifur tortuosus (Copepoda); larval Corynosoma australe (Acanthocephala). Ten species were found only in Coquimbo and three were found only in Antofagasta, species common to both localities were Pseudopecoelus sp., C. australe , Anisakis sp. and A. sebastodis . Evidence, based on qualitative differences between the parasite faunas of the red rockfish, suggests the existence of two discrete stocks.     

Life-stage-dependent supergene haplotype frequencies and metapopulation neutral genetic patterns of Atlantic cod,Gadus morhua,from Canada's Northern cod stock region and adjacent areas

Among highly migratory fish species, nursery areas occupied by juveniles often differ from adult habitats. To better understand the spatial dynamics of Canada's Northern cod stock, juveniles caught off the east coast of Newfoundland and Labrador were compared to adults from the same region as well as individuals from other areas in Atlantic Canada using double-digest restriction site-associated DNA sequencing–derived single nucleotide polymorphisms. A reduced proportion of homozygotes with a chromosomal inversion located in linkage group 1 (LG1) was detected between juvenile and adult samples in the Northern cod stock region, potentially indicating age-dependent habitat use or ontogenetic selection for attributes associated with the many genes located in LG1. No selectively neutral genetic differences were found between samples from the Northern cod stock; nevertheless, significant differences were found between some of these samples and cod collected from St. Pierre Bank, Bay of Fundy, Browns Bank and the southern Scotian Shelf. Clustering analysis of variants at neutral loci provided evidence for three major genetic units: (a) the Newfoundland Atlantic Coast, (b) eastern and southern Gulf of St. Lawrence and Burgeo Bank and (c) the Bay of Fundy, Browns Bank and southern Scotian Shelf. Both adaptive and neutral population structure within the Northern cod stock should be considered by managers to promote demographic rebuilding of the stock.     

Coral reef fisheries stock assessment

Summary Although all fisheries are multispecies and spatially heterogeneous, coral reef fisheries are an extreme in both respects. The two main approaches to stock assessment have been either to consider individual species separately or to lump all species together. Both are limited in their predictive power. The lack of ecological knowledge and the large number of parameters required make methods based on single species often impractical or expensive. However, where the appropriate information is available, ecological studies do not provide significant improvements on yield-per-recruit or surplus yield models currently used.Alternative community models based on aggregates of species lack predictive power, empirical support and relative data. Models are further limited because they do not address various economic aspects, fish movement and recruitment, all of which must be spatially resolved. However, the ECOPATH model, based on trophic compartments, represents a new approach useful to multispecies assessment, and the only way at present to include predation in stock models. In practice the data available will be the most important factor in the choice of stock assessment model.The major concern for management of many coral reefs is conservation of the habitat and stocks. In some cases this has been achieved with little reference to stock assessment, by using community management and closed areas, which are receiving increasing support. However, once the objective of conservation is achieved, stock assessment should have an important role in improving the economic performance of the fisheries. The wider problems of management have no simple solutions, but managers should look to adaptive management, designing their own experiments to choose between management models.     

Embryonic and larval development of the Pacific cod Gadus macrocephalus from Taui Bay,northern Sea of Okhotsk

Experimental data on the embryogenesis and early post-embryonic development of the Pacific cod Gadus macrocephalus Tilesius that breed in Taui Bay are considered. Fertilized eggs at stage II have a diameter of 1.000–1.250 mm, and a mean of 1.103 ± 0.003 mm. Numerous teardrop-shaped inclusions in the plasma of the blastodisc and in blastomeres presumably prevent cod eggs from freezing at low temperatures during incubation in vivo. Embryogenesis of cod in vitro at the temperatures of 2.2 and 5.2°C lasts for 490 and 768 hours, respectively. Newly hatched cod prelarvae have a body length of 4.28–5.10 mm, a mean of 4.34 ± 0.03 mm; they switch to mixed and exogenous nutrition by 6 and 10 days, after reaching a mean length of 4.97 and 5.18 mm, respectively.     

External quality assessment schemes for inorganic elements in the clinical laboratory: Lessons from the OELM scheme

Measurements of inorganic elements in clinical laboratories produce results used for the diagnosis, the treatment and the monitoring of deficiencies or overloads. The main objective of External Quality Assessment Schemes is to verify, on a regular frequency, that clinical laboratory results correspond to the quality requirement for patient care. Therefore, External Quality Assessment Schemes represent an essential component of a laboratory’s quality management system. However, External Quality Assessment Schemes within the same analytical field remain heterogeneous for different reasons such as samples, determination of assigned value, acceptable limits, content of the reports. The aim of this review was to describe and illustrate some major critical aspects of External Quality Assessment Schemes based on Occupational and Environmental Laboratory Medicine external quality assessment scheme experience.     

Catchability: a key parameter for fish stock assessment

Summary Catchability is a concept in fishery biology which reflects the efficiency of a particular fishery. Its quantitative magnitude is expressed by the catchability coefficient, which relates the biomass abundance to the capture or fishing mortality. This paper is a comprehensive review of catchability including the development of our knowledge, interpretation and estimation.Catchability patterns indicate that the catchability coefficient has been used in two main lines: (a) increased efficiency of fishing effort and (b) its relation to population fishery processes for assessment and management purposes. It involves various aspects of the fishery, such as individual and population biology, characteristics of the fishing gear, amount of fishing, fishing strategies, and environmental fluctuation, among others.The concept is proposed of an integrated model of the catchability coefficient, which incorporates various of the aspects mentioned above. It is illustrated with two examples of its application: the red grouper (Epinephelus morio) fishery from the Campeche Bank, Gulf of Mexico, and the sardine (Sardinops caeruleus) fishery from the Gulf of California.     

Spawning stock and recruitment in North Sea cod shaped by food and climate

In order to provide better fisheries management and conservation decisions, there is a need to discern the underlying relationship between the spawning stock and recruitment of marine fishes, a relationship which is influenced by the environmental conditions. Here, we demonstrate how the environmental conditions (temperature and the food availability for fish larvae) influence the stock–recruitment relationship and indeed what kind of stock–recruitment relationship we might see under different environmental conditions. Using unique zooplankton data from the Continuous Plankton Recorder, we find that food availability (i.e. zooplankton) in essence determines which model applies for the once large North Sea cod (Gadus morhua) stock. Further, we show that recruitment is strengthened during cold years and weakened during warm years. Our combined model explained 45 per cent of the total variance in cod recruitment, while the traditional Ricker and Beverton–Holt models only explained about 10 per cent. Specifically, our approach predicts that a full recovery of the North Sea cod stock might not be expected until the environment becomes more favourable.     

Observations on mass atresia and skipped spawning in northern Atlantic cod, from Smith Sound, Newfoundland

Atlantic cod Gadus morhua were collected from Smith Sound, Newfoundland in January 1999. Visual examination of females (n=150) and males (n=126) revealed that some large fish (42–79 cm) had underdeveloped gonads. Histological examination of underdeveloped ovaries indicated that the majority of these females were undergoing mass resorption of oocytes and would not have spawned in 1999. Fish in this condition included females that were aborting their first attempt at maturation and females that had spawned the previous year but were failing to re-ripen. Somatic and liver condition were significantly lower (P<0·05) for fish undergoing mass oocyte resorption than ripening females, suggesting that the interruption in the maturation cycle may have been related to insufficient nutrient storage. In males, testes of some adult fish were considered to be non-reproductive as they showed no signs of ripening and probably would not have spawned in 1999. Liver condition was significantly higher (P<0·05) for non-reproductive males than those that were ripening. Disruptions in male and female reproductive cycles may also have been related to water temperatures that were too cold (0–0·5° C) for successful gamete development. Immature gametes (perinucleolar oocytes in females; spermatogonia in males) showed no signs of breakdown in non-reproductive individuals, suggesting that they retained the potential to develop and spawn gametes in 2000.     

An analysis of a nonlinear stage-structured cannibalism model with application to the Northeast Arctic cod stock

A two-dimensional stage-structured population model with nonlinear cannibalism terms is studied. We show that there is a large parameter interval where the nontrivial equilibrium of the model is the only stable attractor, but that there also exist parameter intervals where we find quasiperiodic, periodic and chaotic dynamics. Moreover, in the interplay between increasing the fecundity and increasing the cannibalism pressure, the former turns out to be a destabilizing effect while the latter tends to act in a stabilizing fashion. Finally, we have applied the model to the North Atlantic cod stock using ICES biomass estimates. Our main conclusion from this study is that the combined effect of recruitment and cannibalism may not serve as an explanation of the observed fluctuations in the cod stock.     

The dangers of ignoring stock complexity in fishery management: the case of the North Sea cod

The plight of the marine fisheries is attracting increasing attention as unsustainably high exploitation levels, exacerbated by more extreme climatic conditions, are driving stocks to the point of collapse. The North Atlantic cod (Gadus morhua), a species which until recently formed a major component of the demersal fisheries, has undergone significant declines across its range. The North Sea stock is typical of many, with a spawning stock biomass that has remained below the safe biological limit since 2000 and recruitment levels near the lowest on record. Cod within the North Sea are currently managed as a single stock, and yet mounting empirical evidence supports the existence of a metapopulation of regionally variable, genetically distinct, sub-stocks. Applying the same management strategies to multiple stocks that differ in their resilience to exploitation inevitably results in the overfishing and likely collapse of the weaker components. Indeed, recent studies have identified two North Sea spawning stocks that have undergone disproportionally large collapses with very substantial reductions in egg production. Similarly affected cod stocks in the northwest Atlantic have shown little evidence of recovery, despite fishery closures. The possible implications of ignoring sub-structuring within management units for biocomplexity, local adaptation and ecosystem stability are considered.     

Seasonal maturity development of Baltic cod in different spawning areas: importance of the Arkona Sea for the summer spawning stock

We investigated the seasonal maturity development of cod in four areas of the Baltic Sea. Two different spawning peaks were identified and found to be consistent over the period 1992–2005. In the Kiel Bight and Mecklenburg Bight (ICES SD 22) a spawning peak was observed from March to April (spring spawning). In the areas of the Arkona Sea (ICES SD 24) and Bornholm Sea (ICES SD 25) the spawning peak occurred during summer. In the Bornholm Sea, the main spawning activities began in June and ended in September, with a spawning peak in June–August (summer spawning). In the Arkona Sea, which is a transition area between the Mecklenburg Bight and the central Baltic Sea, spawning began in March and lasted until July, with a spawning peak in June–July (summer spawning). Seasonal maturity development and proportions of spawning cod in June in the Arkona Sea were similar to that of the Bornholm Sea. In addition, the proportion of spawning cod in the Arkona Sea was positively correlated with the size of the spawning stock in the Bornholm Sea. Our results provide evidence of a spatial expansion of spawning activities of the summer spawning stock from the eastern Baltic Sea into the Arkona Sea. Therefore, the Arkona Sea should be considered as one of the spawning habitats of the summer spawning stock of Baltic cod.     

Lessons for prison re-entry from the feminist movement

The convict criminology and prisoner re-entry movements are at a seminal moment in their development. This moment shares many characteristics with the feminist movements of the 1970s and 1980s. In the interest of not repeating the missteps of the past, the author believes that is important to draw from the lessons of the earlier feminist movement. For the prisoner re-entry movement, the experience of the rape crisis centers and domestic violence shelters in becoming aligned with the state is of particular importance. Convict criminology can benefit from the lessons of intersection theory and begin to draw on the diversity that exists within the community of formerly incarcerated individuals