The ultrasonic degradation of biological macromolecules under conditions of stable cavitation. II. Degradation of deoxyribonucleic acid

Solutions of T7 bacteriophage or calf thymus DNA arc degraded in solution by ultrasonic fields of low intensity in the presence of vibrating air bubbles but are not degraded at these low intensities when such bubbles are absent. Evidence is presented for the hydrodynamic nature of the observed degradation and theoretical simulation of a plausible degradation mechanism is compared with experimental degradation studies. It is concluded that degradation of such linear macromolecules as DNA may occur as a result of stresses induced in the macromolecule; these stresses are the result of a relative movement of solvent molecules and the macromolecules in the time-independent flow of solvent near the vibrating bubbles.     

A microprocessor-based ultrasonic limb movement monitoring system

A system has been devised, using a spark-gap ultrasonic transmitter and an array of four ultrasonic receivers, to monitor the unrestrained movement of a physically handicapped child's fingertip as he attempts to perform some specific task. A microprocessor is used to measure the time taken for a pulsed ultrasonic shock-wave to travel from the fingertip-mounted spark-transmitter to each of the four ultrasonic recievers, and hence compute the Cartesian co-ordinates of the transmitter, It is hoped that this equipment will enable the voluntary components in the poorly-controlled limb movements of some of the physically handicapped children to be isolated and used to control external equipment.     

Absolute measurement of enhanced fluctuations in assemblies of biomolecules by ultrasonic techniques.

By expressing the fluctuation-dissipation theorem explicitly, equations are obtained for the ultrasonic relaxation amplitudes that contain one single molecular parameter, i.e., the fluctuation, or the sum of fluctuations. The absolute measurement of this parameter is therefore possible. The equations apply to a two-state system, to a multistate system and to a linear Ising chain as well. In an aqueous medium, where molar volume changes are important, the ultrasonic relaxation amplitudes are proportional to the volume fluctuations. For assemblies of biomolecules that exhibit enhanced ultrasonic absorption on assembly it is possible to measure the increase on assembly of the sum of fluctuations. In view of application to tobacco mosaic virus protein aggregates, examples are given in which the fluctuations associated with two normal modes of relaxation are equally enhanced when the difference of conformational stability of the states is reduced. The corresponding observable changes of the ultrasonic spectra are described.     

Real-Time Determination of Structural Changes of Sodium Caseinate-Stabilized Emulsions Containing Pectin Using High Resolution Ultrasonic Spectroscopy

The interactions that lead to structure transitions in oil-in-water emulsions were investigated using high-resolution ultrasonic spectroscopy. High methoxyl pectin (HMP) was added to the emulsions at various concentrations and the dynamics of aggregation induced by changes in pH were observed. Two independent ultrasonic parameters, velocity and attenuation, were measured as a function of time or pH. At pH 6.8, both velocity and attenuation of sound changed as a function of HMP concentration. During acidification, caused by the addition of glucono-δ-lactone, there were small changes in the overall ultrasonic velocity, but it was possible to relate these changes to the structural changes in the emulsion. The values of ultrasonic attenuation decreased at high pH with increasing amount of HMP, indicating changes in the flocculation state of the oil droplets caused by depletion forces. During acidification at pH 5.4, emulsions containing HMP showed a steep increase in the ultrasonic attenuation, and this pH corresponds to the pH of association of HMP with the casein-covered oil droplets. The adsorption of HMP onto the interface causes a rearrangement of the oil droplets, and the emulsions containing sufficient amounts of HMP no longer gel at acid pH. This is well described by the ultrasonic attenuation changes in the various emulsions. This research demonstrated for the first time that ultrasonic spectroscopy can be employed for in situ monitoring and analysis of acid-induced destabilization of food emulsions.     

On-line evaluation of ultrasonic integrated backscatter

Although it is already known that reflected ultrasonic signals (backscatter) are changed by the structure of the tissue through which they pass, clinicians are still awaiting a practical instrument in which information from backscatter reflections will serve as a diagnostic aid additional to that provided by conventional ultrasonic scans.The equipment described here is both small and fast, and is integrated into a normal ultrasound installation. No new operating procedures have to be learned. The integrated backscatter is calculated on-line and presented on an LED as tissue characterization parameters. In order to minimize noise due to physical movement of the heart during an investigation of the myocardium, the analysis is synchronized with the ECG; and as an aid to the user, the normal system VDU displays both the ECG and the activating trigger pulse derived from the R-wave peak. An A-scan display has been used but this could readily be adapted for B-scan operation and single line analysis.Tests with backscattering models and standard instrumentation have shown no significant difference between results using time domain or frequency domain analysis.     

Sensory adaptation mutants of E. coli.

The ability of E. coli to adapt to constant levels of attractant and repellent chemicals was studied by examining the patterns of flagellar movement in cells subjected to abrupt concentration changes. Wild-type bacteria exhibited transient responses to such stimuli, in support of previous findings. Nonchemotactic mutants of the cheX class responded to both attractants and repellents, but were unable to terminate these behavioral changes as long as the stimulating chemical was present. The sensory adaptation defect of cheX strains may be due to an inability to methylate several cytoplasmic membrane proteins that initiate changes in flagellar movement in response to chemoreceptor signals. Based on these results, possible mechanisms of stimulus transduction and sensory adaptation during chemotaxis are discussed.     

Recovery in stroke rehabilitation through the rotation of preferred directions induced by bimanual movements: a computational study

Stroke patients recover more effectively when they are rehabilitated with bimanual movement rather than with unimanual movement; however, it remains unclear why bimanual movement is more effective for stroke recovery. Using a computational model of stroke recovery, this study suggests that bimanual movement facilitates the reorganization of a damaged motor cortex because this movement induces rotations in the preferred directions (PDs) of motor cortex neurons. Although the tuning curves of these neurons differ during unimanual and bimanual movement, changes in PD, but not changes in modulation depth, facilitate such reorganization. In addition, this reorganization was facilitated only when encoding PDs are rotated, but decoding PDs are not rotated. Bimanual movement facilitates reorganization because this movement changes neural activities through inter-hemispheric inhibition without changing cortical-spinal-muscle connections. Furthermore, stronger inter-hemispheric inhibition between motor cortices results in more effective reorganization. Thus, this study suggests that bimanual movement is effective for stroke rehabilitation because this movement rotates the encoding PDs of motor cortex neurons.     

Ultrastructural changes in the Malpighian tubules of the house cricket, Acheta domesticus, at the onset of diuresis: A time study

The Malpighian tubules (Mt) of insects are responsible for maintaining osmotic homeostasis and eliminating waste from the hemolymph. When stimulated by diuretic factors the tubule cells are able to transport extraordinary volumes of fluid over short periods of time. We have been studying the changes that occur within the cells that accompany and facilitate this phenomenon. We present the ultrastructural changes that occur in the mid-tubule of the house cricket, Acheta domesticus, following exposure to the second messenger analog, dibutyryl cAMP, over the period from 15-420 sec. Vacuolation of the cytoplasm begins as early as 30 sec poststimulation with a significant increase in vacuolation occurring after 120 sec. As expected, there is an increase in the surface area of the basolateral membrane to facilitate the rapid movement of fluid into the cells. Other ultrastructural changes noted to accompany the onset of diuresis include the movement of mitochondria into areas adjacent to transport membranes, the vesiculation of Golgi, mobilization of CaPO(4) spherites, and a direct interaction of these spherites with active mitochondria. We discuss several possible roles for these changes in terms of rapid fluid transport.     

Movement and habitat use by the marbled lungfish Protopterus aethiopicus Heckel 1851 in Lake Baringo, Kenya

The marbled lungfish, Protopterus aethiopicus, a recent introduction into Lake Baringo, Kenya is now an important commercial species there. Because little is known about its behaviour, we used ultrasonic telemetry to investigate its movements and use of habitat as part of a broader biological study. Twelve marbled lungfish were implanted with ultrasonic tags and tracked for variable periods between September 2001 and 2002. Two individuals were tracked for most of the study period. Daily movement ranged from little or none to 5.2 km. Mean hourly rates of movement for three fish located twice a day (morning and late afternoon) over several days suggested that individuals were active throughout the diel period. Maximum lake depth was about 3 m and fish utilized all depths greater than 1 m. Six home ranges described for four lungfish varied in size from 5.8 to 19.8 km ² and were occupied for between 2 and 4.5 months. Use of habitat and the movement of marbled lungfish in Lake Baringo appeared to be influenced more by biotic than abiotic factors.     

Src kinase activation: A switched electrostatic network

Src tyrosine kinases are essential in numerous cell signaling pathways, and improper functioning of these enzymes has been implicated in many diseases. The activity of Src kinases is regulated by conformational activation, which involves several structural changes within the catalytic domain (CD): the orientation of two lobes of CD; rearrangement of the activation loop (A-loop); and movement of an alpha-helix (alphaC), which is located at the interface between the two lobes, into or away from the catalytic cleft. Conformational activation was investigated using biased molecular dynamics to explore the transition pathway between the active and the down-regulated conformation of CD for the Src-kinase family member Lyn kinase, and to gain insight into the interdependence of these changes. Lobe opening is observed to be a facile motion, whereas movement of the A-loop motion is more complex requiring secondary structure changes as well as communication with alphaC. A key result is that the conformational transition involves a switch in an electrostatic network of six polar residues between the active and the down-regulated conformations. The exchange between interactions links the three main motions of the CD. Kinetic experiments that would demonstrate the contribution of the switched electrostatic network to the enzyme mechanism are proposed. Possible implications for regulation conferred by interdomain interactions are also discussed.     

Fertilization alters the orientation of pigment granule saltations in Arbacia eggs.

Unfertilized eggs of the sea urchin Arbacia punctulata contain pigment granules distributed throughout their cytoplasm. During the first 15 minutes after fertilization, these vesicles move out to the cortex where they become firmly anchored. We have used time-lapse video differential interference microscopy to analyze the motility of these organelles in unfertilized and fertilized Arbacia eggs. Pigment granules exhibit saltatory movement in both unfertilized and fertilized eggs. Quantitation of vesicle saltations before and after fertilization demonstrates that while there is no significant difference in the speed or path-length of vesicle movement, there is a dramatic change in the orientation of these saltations. Saltations in the unfertilized egg are very non-radial and are as likely to be directed toward the cortex as away. In contrast, saltations in the fertilized egg are more radially oriented and more likely to be cortically directed. This transition must reflect underlying changes in the cellular structures necessary for pigment granule saltations. The change in the orientation of pigment granule saltations following fertilization requires both a transient increase in the cytoplasmic concentration of Ca2+ and an elevation of cytoplasmic pH. Similarly, the ability of pigment granules to adhere to the cortex requires both the transient elevation of cytoplasmic Ca2+ and the alkalinization of the cytoplasm. As the reorganization of cortical actin at fertilization is regulated by these ionic fluxes, and both movement and adhesion are sensitive to cytochalasins, we hypothesize that the alterations in directed motility and adhesion reflect underlying changes in the actin cytoskeleton.     

Identification of mutations that delay somatic or reproductive aging of Caenorhabditis elegans

Aging is an important feature of animal biology characterized by progressive, degenerative changes in somatic and reproductive tissues. The rate of age-related degeneration is genetically controlled, since genes that influence lifespan have been identified. However, little is known about genes that affect reproductive aging or aging of specific somatic tissues. To identify genes that are important for controlling these degenerative changes, we used chemical mutagenesis to perform forward genetic screens in Caenorhabditis elegans. By conducting a screen focused on somatic aging, we identified mutant hermaphrodites that displayed extended periods of pharyngeal pumping, body movement, or survival. One of these mutations is a novel allele of the age-1 gene. age-1 encodes a phosphatidylinositol-3-kinase (PI3K) that functions in the insulin/insulin-like growth factor-1 (IGF-1) signaling pathway. age-1(am88) creates a missense change in the conserved PIK domain and causes dramatic extensions of the pharyngeal pumping and body movement spans, as well as a twofold extension of the lifespan. By conducting screens focused on reproductive aging in mated hermaphrodites, we identified mutants that displayed increased progeny production late in life. To characterize these mutations, we developed quantitative measurements of age-related morphological changes in the gonad. The am117 mutation delayed age-related declines in progeny production and morphological changes in the gonad. These studies provide new insights into the genetic regulation of age-related degenerative changes in somatic and reproductive tissues.     

The Drosophila Actin Regulator ENABLED Regulates Cell Shape and Orientation during Gonad Morphogenesis

Organs develop distinctive morphologies to fulfill their unique functions. We used Drosophila embryonic gonads as a model to study how two different cell lineages, primordial germ cells (PGCs) and somatic gonadal precursors (SGPs), combine to form one organ. We developed a membrane GFP marker to image SGP behaviors live. These studies show that a combination of SGP cell shape changes and inward movement of anterior and posterior SGPs leads to the compaction of the spherical gonad. This process is disrupted in mutants of the actin regulator, enabled (ena). We show that Ena coordinates these cell shape changes and the inward movement of the SGPs, and Ena affects the intracellular localization of DE-cadherin (DE-cad). Mathematical simulation based on these observations suggests that changes in DE-cad localization can generate the forces needed to compact an elongated structure into a sphere. We propose that Ena regulates force balance in the SGPs by sequestering DE-cad, leading to the morphogenetic movement required for gonad compaction.     

The possible influence of osmotic poration on cell membrane water permeability

It has been hypothesized that pores in the plasma membrane form under conditions of rapid water efflux, allowing extracellular ice to grow into the cytoplasm under conditions of rapid freezing. When cells with intracellular ice are thawed slowly, the transmembrane ice crystal expands through recrystallization causing the cell to lyse. One of the implications of this hypothesis is that osmotic pores will provide an alternative route for water movement under conditions of osmotically induced flow. We show that the plasma membrane water permeability of a fibroblast cell changes as a function of the osmotic pressure gradient that is used to drive water movement. It is further shown that cell volume is more important than the magnitude of water flux in causing this departure from a uniform water permeability. We suggest that these data provide evidence of a transient route for water movement across cell membranes.     

Recording the Motor Activity of Aquatic Animals by Ultrasound

An ultrasonic technique based on the Doppler effect is presented to allow the registration of aquatic animal movements. The method was tested on crucians (Carassius carassius) in an aquarium as part of chronobiological investigations. Comparison with light barrier measurements shows that the Doppler technique is suitable for detecting typical circadian and seasonal changes in the motor activity of the fishes. The features of the ultrasonic method are discussed.     

Flagellar Movements and Controlling Apparatus in Flagellates

Referee: Dr. Kenneth R. Robinson, Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-1392 Crawling, sliding, and swimming are only a few of the many motile responses of microorganisms to environmental cues. However, what is commonly defined as movement is just the final, often the only, detectable step of a series of complex intracellular reactions based on sophisticated locomotory machineries that function according to well-defined locomotory strategies and patterns. A simple motion can arise by a shape change of permanently linked molecules, and a more complex one by reversible interactions the causing movement of filaments relative to each other, or by reversible assembly and disassembly of elements, etc., all of which have in common the need for energy input. Proteins can undergo these changes in response to any modification of their environment and be considered the most likely molecules serving motor functions in real systems. The analysis of microrganism motors and motor controlling devices such as flagella and their accessory components suggests that the movement of these structures can be considered an example of propagation of sensory information along lattice-like structures by means of repetitive protein conformational changes. These intracellular devices taken as a whole could represent the network condensing both the information and motor systems in aneural microorganisms.     

Review of Elasmobranch Behavioral Studies Using Ultrasonic Telemetry with Special Reference to the Lemon Shark, Negaprion Brevirostris, Around Bimini Islands, Bahamas

A review of past behavioral ultrasonic telemetry studies of sharks and rays is presented together with previously unpublished material on the behavior of the lemon shark, Negaprion brevirostris, around the Bimini Islands, Bahamas. The review, focusing on movement behaviors of 20 shark and three ray species, reveals that elasmobranchs exhibit a variety of temporal and spatial patterns in terms of rates-of-movement and vertical as well as horizontal migrations. The lack of an apparent pattern in a few species is probably attributable to the scarcity of tracking data. Movements are probably governed by several factors, some still not studied, but data show that food, water temperature, bottom type, and magnetic gradient play major roles in a shark's decision of where and when to swim. A few species exhibit differences in behavior between groups of sharks within the same geographical area. This interesting finding warrants further research to evaluate the causes of these apparent differences and whether these groups constitute different subpopulations of the same species. The lack of telemetry data on batoids and some orders of sharks must be addressed before we can gain a more comprehensive understanding of the behavior of elasmobranch fishes. Previously unpublished data from 47 smaller and 38 larger juvenile lemon sharks, collected over the decade 1988–1998, provide new results on movement patterns, habitat selection, activity rhythms, swimming speed, rate-of-movement, and homing behavior. From these results we conclude that the lemon shark is an active predator with a strong, apparently innate homing mechanism. This species shows ontogenetic differences in habitat selection and behavior, as well as differences in movements between groups of individuals within the same area. We suggest three hypotheses for future research on related topics that will help to understand the enigmatic behavior of sharks.     

Strain-induced damage reduces echo intensity changes in tendon during loading

Tendon functionality is related to its mechanical properties. Tendon damage leads to a reduction in mechanical strength and altered biomechanical behavior, and therefore leads to compromised ability to carry out normal functions such as joint movement and stabilization. Damage can also accumulate in the tissue and lead to failure. A noninvasive method with which to measure such damage potentially could quantify structural compromise from tendon injury and track improvement over time. In this study, tendon mechanics are measured before and after damage is induced by "overstretch" (strain exceeding the elastic limit of the tissue) using a traditional mechanical test system while ultrasonic echo intensity (average gray scale brightness in a B-mode image) is recorded using clinical ultrasound. The diffuse damage caused by overstretch lowered the stress at a given strain in the tissue and decreased viscoelastic response. Overstretch also lowered echo intensity changes during stress relaxation and cyclic testing. As the input strain during overstretch increased, stress levels and echo intensity changes decreased. Also, viscoelastic parameters and time-dependent echo intensity changes were reduced.     

The role of proprioceptive information in programming of anticipatory postural components of voluntary movements

Anticipatory components of the EMG activity of the postural muscles during a voluntary movement were analyzed to find out how the CNS regulates these components in response to changes in the movement parameters and what information is used for programming these components. The fast lift of an arm in an erect posture was used as a model. The parameters of the movement were modified by varying weights held in the hand (0.5, 1.0, and 1.5 kg) and the preliminary information on these weights: lifting the hand holding a weight and lifting an unknown weight from a support in the absence of information on its value or after receiving verbal information on it. Our experiments showed that the program of maintaining an erect posture while performing a fast voluntary lift of the arm involves anticipatory adjustments of postural muscles (the soleus muscle, biceps muscle of the thigh, and sacrospinal muscle) using information on the parameters of the movement to be performed. For all these muscles, the anticipation time did not depend on either experimental conditions or the velocity of lifting the arm. The duration of the activity and its amount had different dependences on the lifted weight. The parameters of inhibition of the soleus muscle did not depend on the lifted weight, the activity of the biceps muscle of the thigh was mainly regulated by varying its amplitude, and the regulation of the sacrospinal muscle involved both amplitude and duration changes. It was shown that the adjustment of anticipatory movement components can be only based on proprioceptive rather than verbal (conscious) information.