Organization of the autophagy pathway in neurons

Macroautophagy (hereafter referred to as autophagy) is an essential quality-control pathway in neurons, which face unique functional and morphological challenges in maintaining the integrity of organelles and the proteome. To overcome these challenges, neurons have developed compartment-specific pathways for autophagy. In this review, we discuss the organization of the autophagy pathway, from autophagosome biogenesis, trafficking, to clearance, in the neuron. We dissect the compartment-specific mechanisms and functions of autophagy in axons, dendrites, and the soma. Furthermore, we highlight examples of how steps along the autophagy pathway are impaired in the context of aging and neurodegenerative disease, which underscore the critical importance of autophagy in maintaining neuronal function and survival.     

Response characteristics of wide-field non-habituating non-directional motion detecting neurons in the optic lobe of the locust,Locusta migratoria

1. Extracellular recordings from wide-field nonhabituating non-directional (ND) motion detecting neurons in the second optic chiasma of the locust Locusta migratoria are presented. The responses to various types of stepwise moving spot and bar stimuli were monitored (Fig. 1)
2. Stepwise motion in all directions elicited bursts of spikes. The response is inhibited at stimulus velocities above 5°/s. At velocities above 10°/s the ND neurons are slightly more sensitive to motion in the horizontal direction than to motion in the vertical direction (Fig. 2). The ND cells have a preference for small moving stimuli (Fig. 3).
3. The motion response has two peaks. The latency of the second peak depends on stimulus size and stimulus velocity. Increasing the height from 0.1 to 23.5° of a 5°/s moving bar results in a lowering of this latency time from 176 to 130 ms (Fig. 4). When the velocity from a single 0.1° spot is increased from 1 to 16°/s, the latency decreases from 282 to 180 ms (Figs. 5–6).
4. A change-of-direction sensitivity is displayed. Stepwise motion in one particular direction produces a continuous burst of spike discharges. Reversal or change in direction leads to an inhibition of the response (Fig. 7).
5. It shows that non-directional motion perception of the wide-field ND cells can simply be explained by combining self-and lateral inhibition.

     

Motion processing: where the medium is the message

The primate retina serves up three channels for visual entertainment, of which just one is used for the primary analysis of motion. A prominent, unique class of neuron has a dominant role in transmission from cortical area V1.     

Motion processing streams in Drosophila are behaviorally specialized

Motion vision is an ancient faculty, critical to many animals in a range of ethological contexts, the underlying algorithms of which provide central insights into neural computation. However, how motion cues guide behavior is poorly understood, as the neural circuits that implement these computations are largely unknown in any organism. We develop a systematic, forward genetic approach using high-throughput, quantitative behavioral analyses to identify the neural substrates of motion vision in Drosophila in an unbiased fashion. We then delimit the behavioral contributions of both known and novel circuit elements. Contrary to expectation from previous studies, we find that orienting responses to motion are shaped by at least two neural pathways. These pathways are sensitive to different visual features, diverge immediately postsynaptic to photoreceptors, and are coupled to distinct behavioral outputs. Thus, behavioral responses to complex stimuli can rely on surprising neural specialization from even the earliest sensory processing stages.     

Assessing mitochondrial morphology and dynamics using fluorescence wide-field microscopy and 3D image processing

Mitochondrial morphology and length change during fission and fusion and mitochondrial movement varies dependent upon the cell type and the physiological conditions. Here, we describe fundamental wide-field fluorescence microcopy and 3D imaging techniques to assess mitochondrial shape, number and length in various cell types including cancer cell lines, motor neurons and astrocytes. Furthermore, we illustrate how to assess mitochondrial fission and fusion events by 3D time-lapse imaging and to calculate mitochondrial length and numbers as a function of time. These imaging methods provide useful tools to investigate mitochondrial dynamics in health, aging and disease.     

Protein processing within the secretory pathway.

Endoproteolytic cleavage of hormone and neuropeptide precursors, as well as many complex proteins, such as coagulation factors and viral glycoproteins, is a key process in the generation of bioactive polypeptides. These cleavages typically occur at the dibasic amino acid residues Lys-Arg or Arg-Arg. The enzymes responsible for the processing belong to a newly discovered family of serine proteases related to the bacterial subtilisins. These include PACE (furin), PC1/PC3, PC2 and PACE4, which have all been characterized functionally and structurally.     

Sensory processing in external globus pallidus neurons

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Spike timing and visual processing in the retinogeniculocortical pathway

Although the visual response properties of neurons along the retinogeniculocortical pathway have been studied for decades, relatively few studies have examined how individual neurons along the pathway communicate with each other. Recent studies in the cat (Felis domestica) now show that the strength of these connections is very dynamic and spike timing plays an important part in determining whether action potentials will be transferred from pre- to postsynaptic cells. This review explores recent progress in our understanding of what role spike timing has in establishing different patterns of geniculate activity and how these patterns ultimately drive the cortex.     

Development of spatial coarse-to-fine processing in the visual pathway

The sequential analysis of information in a coarse-to-fine manner is a fundamental mode of processing in the visual pathway. Spatial frequency (SF) tuning, arguably the most fundamental feature of spatial vision, provides particular intuition within the coarse-to-fine framework: low spatial frequencies convey global information about an image (e.g., general orientation), while high spatial frequencies carry more detailed information (e.g., edges). In this paper, we study the development of cortical spatial frequency tuning. As feedforward input from the lateral geniculate nucleus (LGN) has been shown to have significant influence on cortical coarse-to-fine processing, we present a firing-rate based thalamocortical model which includes both feedforward and feedback components. We analyze the relationship between various model parameters (including cortical feedback strength) and responses. We confirm the importance of the antagonistic relationship between the center and surround responses in thalamic relay cell receptive fields (RFs), and further characterize how specific structural LGN RF parameters affect cortical coarse-to-fine processing. Our results also indicate that the effect of cortical feedback on spatial frequency tuning is age-dependent: in particular, cortical feedback more strongly affects coarse-to-fine processing in kittens than in adults. We use our results to propose an experimentally testable hypothesis for the function of the extensive feedback in the corticothalamic circuit.     

Neural processing: the logic of multiplication in single neurons

Theory indicates that neural networks can derive considerable computational power from a simple multiplication of their inputs, but the extent to which real neurons do this is unclear. A recent study of the auditory localization pathway of the barn owl has shed new light on this important question.     

Polysaccharide processing and presentation by the MHCII pathway

The adaptive immune system functions through the combined action of antigen-presenting cells (APCs) and T cells. Specifically, class I major histocompatibility complex antigen presentation to CD8(+) T cells is limited to proteosome-generated peptides from intracellular pathogens while the class II (MHCII) endocytic pathway presents only proteolytic peptides from extracellular pathogens to CD4(+) T cells. Carbohydrates have been thought to stimulate immune responses independently of T cells; however, zwitterionic polysaccharides (ZPSs) from the capsules of some bacteria can activate CD4(+) T cells. Here we show that ZPSs are processed to low molecular weight carbohydrates by a nitric oxide-mediated mechanism and presented to T cells through the MHCII endocytic pathway. Furthermore, these carbohydrates bind to MHCII inside APCs for presentation to T cells. Our observations begin to elucidate the mechanisms by which some carbohydrates induce important immunologic responses through T cell activation, suggesting a fundamental shift in the MHCII presentation paradigm.     

Nonlinear dynamics and information processing in pacemaker neurons

The paper treats some nonlinear dynamic phenomena in oscillatory activity of a single nerve cell. Based on experiments with CNS bursting pacemaker neurons ofHelix pomatia snail, a mathematical model was studied. The model demonstrates the majority of experimentally observable phenomena and allows one to investigate the role of its separate components. The phenomena demonstrated by model neuron (chaotic behavior, bistability, and sensitivity to parameter variations, initial conditions, and stimuli) may be relevant to information processing in nerve cells. The complexity of [Ca²⁺] _in −V phase diagrams of initial conditions depends on parameters. Transient synaptic impulse produces stable parameter-independent changes in activity of model neuron. These results indicate that a single bursting neuron can work in the neuronal ensemble as a dynamic switch. The sensitivity of this switch is regulated by a neurotransmitter.     

Function of the stromal processing peptidase in the chloroplast import pathway

Chloroplast biogenesis depends on the import of a large diversity of proteins synthesized as precursors in the cytosol. The N-terminal targeting signal, the transit peptide, is proteolytically removed as proteins enter the organelle by a stromal processing peptidase (SPP) in a regulated series of steps. SPP contains a signature HXXEH zinc-binding motif found in members of the M16 metallopeptidase family, which includes, most notably, the mitochondrial processing peptidase. Here we discuss: (i) the broad range of substrates cleaved by SPP, yielding mature proteins for the numerous biosynthetic pathways of the organelle; (ii) the structural features that reside in both SPP and the transit peptide that determine the high specificity of precursor cleavage; (iii) the downregulation of SPP in vivo which shows that it is essential for plant survival; and (iv) the relationship between SPP from higher plants and proteases in several lower eukaryotes and the cyanobacteria.     

Role of the JNK pathway in NMDA-mediated excitotoxicity of cortical neurons

Excitotoxic insults induce c-Jun N-terminal kinase (JNK) activation, which leads to neuronal death and contributes to many neurological conditions such as cerebral ischemia and neurodegenerative disorders. The action of JNK can be inhibited by the D-retro-inverso form of JNK inhibitor peptide (D-JNKI1), which totally prevents death induced by N-methyl-D-aspartate (NMDA) in vitro and strongly protects against different in vivo paradigms of excitotoxicity. To obtain optimal neuroprotection, it is imperative to elucidate the prosurvival action of D-JNKI1 and the death pathways that it inhibits. In cortical neuronal cultures, we first investigate the pathways by which NMDA induces JNK activation and show a rapid and selective phosphorylation of mitogen-activated protein kinase kinase 7 (MKK7), whereas the only other known JNK activator, mitogen-activated protein kinase kinase 4 (MKK4), was unaffected. We then analyze the action of D-JNKI1 on four JNK targets containing a JNK-binding domain: MAPK-activating death domain-containing protein/differentially expressed in normal and neoplastic cells (MADD/DENN), MKK7, MKK4 and JNK-interacting protein-1 (IB1/JIP-1).     

Choline plasmalogen synthesis by the methylation pathway in chick neurons in culture

Choline plasmalogens represent a minor component of lipid membranes in most tissues. In spite of this, their rapid turnover indicates a possible functional role in the cell. The present study demonstrates that these compounds can be synthesized in neuronal cell cultures from chick embryo hemispheres by methylation of ethanolamine plasmalogens since choline plasmalogens were labeled after incubation of cells with tritiated ethanolamine or methionine. This finding could be of a particular interest since it has been suggested that choline plasmalogens, synthesized by methylation, might be involved in receptor activation.     

Visual processing of moving single objects and wide-field patterns in flies: Behavioural analysis after laser-surgical removal of interneurons

A laser micro-beam unit was used to reproducibly and selectively eliminate the large horizontal and vertical motion sensitive neurons (H- and V-cells) of the lobula plate on one side of the brain of house fliesMusca domestica. This was achieved by ablating the precursors of these cells deep in the larval brain without damaging other cells in the brain or other tissues. The individually reared flies were tested for their behaviour. Three tests were performed: (i) visual fixation of a single stripe, (ii) the optomotor turning and thrust response to a stripe moving clockwise and counterclockwise around the fly, (iii) the monocular turning response to a moving grating. The responses to a moving single object were normal on both sides, the control side and the one lacking the H- and V-cells. However, the responses to a moving grating were reduced on the side lacking H- and V-cells for progressive (front to back) and regressive (back to front) motion. From this we conclude that the response to single objects is controlled mainly by cells other than the H- and V-cells. We also suggest two separate pathways for the processing of single object motion and wide field pattern motion respectively (Fig. 8). Furthermore, the H- and V-cells might function as visual stabilizers and background motion processors.     

Antigen processing and presentation: close encounters in the endocytic pathway

Stimulation of helper T cells by class II molecules occurs when the class II molecules bind and display peptides derived from foreign antigens that have been endocytosed. The formation of peptide-class II complexes requires antigen degradation and exposure of the peptide-binding site of class II molecules, both of which depend on proteolysis and low pH in the endocytic pathway. This review discusses the role of specific compartments of the endocytic pathway in the generation of antigenic peptides, and in the binding of antigenic peptides to newly synthesized class II molecules and those that are internalized from the cell surface.