Soil Microbial Responses to Temporal Variations of Moisture and Temperature in a Chihuahuan Desert Grassland

Global climate change models indicate that storm magnitudes will increase in many areas throughout southwest North America, which could result in up to a 25% increase in seasonal precipitation in the Big Bend region of the Chihuahuan Desert over the next 50 years. Seasonal precipitation is a key limiting factor regulating primary productivity, soil microbial activity, and ecosystem dynamics in arid and semiarid regions. As decomposers, soil microbial communities mediate critical ecosystem processes that ultimately affect the success of all trophic levels, and the activity of these microbial communities is primarily regulated by moisture availability. This research is focused on elucidating soil microbial responses to seasonal and yearly changes in soil moisture, temperature, and selected soil nutrient and edaphic properties in a Sotol Grassland in the Chihuahuan Desert at Big Bend National Park. Soil samples were collected over a 3-year period in March and September (2004-2006) at 0-15 cm soil depth from 12 3 x 3 m community plots. Bacterial and fungal carbon usage (quantified using Biolog 96-well micro-plates) was related to soil moisture patterns (ranging between 3.0 and 14%). In addition to soil moisture, the seasonal and yearly variability of soil bacterial activity was most closely associated with levels of soil organic matter, extractable NH(4)-N, and soil pH. Variability in fungal activity was related to soil temperatures ranging between 13 and 26 degrees C. These findings indicate that changes in soil moisture, coupled with soil temperatures and resource availability, drive the functioning of soil-microbial dynamics in these desert grasslands. Temporal patterns in microbial activity may reflect the differences in the ability of bacteria and fungi to respond to seasonal patterns of moisture and temperature. Bacteria were more able to respond to moisture pulses regardless of temperature, while fungi only responded to moisture pulses during cooler seasons with the exception of substantial increased magnitudes in precipitation occurring during warmer months. Changes in the timing and magnitude of precipitation will alter the proportional contribution of bacteria and fungi to decomposition and nitrogen mineralization in this desert grassland.     

Linking Microbial Community Structure and Function to Seasonal Differences in Soil Moisture and Temperature in a Chihuahuan Desert Grassland

Global and regional climate models predict higher air temperature and less frequent, but larger precipitation events in arid regions within the next century. While many studies have addressed the impact of variable climate in arid ecosystems on plant growth and physiological responses, fewer studies have addressed soil microbial community responses to seasonal shifts in precipitation and temperature in arid ecosystems. This study examined the impact of a wet (2004), average (2005), and dry (2006) year on subsequent responses of soil microbial community structure, function, and linkages, as well as soil edaphic and nutrient characteristics in a mid-elevation desert grassland in the Chihuahuan Desert. Microbial community structure was classified as bacterial (Gram-negative, Gram-positive, and actinomycetes) and fungal (saprophytic fungi and arbuscular mycorrhiza) categories using (fatty acid methyl ester) techniques. Carbon substrate use and enzymic activity was used to characterize microbial community function annually and seasonally (summer and winter). The relationship between saprophytic fungal community structure and function remained consistent across season independent of the magnitude or frequency of precipitation within any given year. Carbon utilization by fungi in the cooler winter exceeded use in the warmer summer each year suggesting that soil temperature, rather than soil moisture, strongly influenced fungal carbon use and structure and function dynamics. The structure/function relationship for AM fungi and soil bacteria notably changed across season. Moreover, the abundance of Gram-positive bacteria was lower in the winter compared to Gram-negative bacteria. Bacterial carbon use, however, was highest in the summer and lower during the winter. Enzyme activities did not respond to either annual or seasonal differences in the magnitude or timing of precipitation. Specific structural components of the soil microbiota community became uncoupled from total microbial function during different seasons. This change in the microbial structure/function relationship suggests that different components of the soil microbial community may provide similar ecosystem function, but differ in response to seasonal temperature and precipitation. As soil microbes encounter increased soil temperatures and altered precipitation amounts and timing that are predicted for this region, the ability of the soil microbial community to maintain functional resilience across the year may be reduced in this Chihuahuan Desert ecosystem.     

Antecedent Conditions Influence Soil Respiration Differences in Shrub and Grass Patches

Quantifying the response of soil respiration to past environmental conditions is critical for predicting how future climate and vegetation change will impact ecosystem carbon balance. Increased shrub dominance in semiarid grasslands has potentially large effects on soil carbon cycling. The goal of this study was to characterize the effect of antecedent moisture and temperature conditions on soil respiration in a grassland now dominated by shrubs. Continuous measurements of soil respiration, soil temperature, and soil moisture were made over the entire summer of 2005 within distinct vegetation microsites in this shrubland community—under grasses, shrubs, and in open spaces. We analyzed these data within a Bayesian framework that allowed us to evaluate the time-scale over which antecedent conditions influence soil respiration. The addition of antecedent conditions explained an additional 16% of the variation in soil respiration. High soil moisture during the preceding month increased respiration rates in both the grass and shrub microsites. However, the time period over which antecedent soil moisture influenced the temperature sensitivity of soil respiration was shorter in the shrub compared to the grass microsites (1 vs. 2 weeks, respectively). The depth of moisture was important; for example, for respiration under shrubs, near-surface moisture was more influential on the day of the respiration measurement but subsurface moisture was more influential on the antecedent time scale. Although more mechanistic studies are required, this study is the first to reveal that shrub encroachment changes the time scales over which soil moisture and temperature affect soil respiration.     

Soil Microbial Responses to Increased Moisture and Organic Resources along a Salinity Gradient in a Polar Desert

Microbial communities in extreme environments often have low diversity and specialized physiologies suggesting a limited resistance to change. The McMurdo Dry Valleys (MDV) are a microbially dominated, extreme ecosystem currently undergoing climate change-induced disturbances, including the melting of massive buried ice, cutting through of permafrost by streams, and warming events. These processes are increasing moisture across the landscape, altering conditions for soil communities by mobilizing nutrients and salts and stimulating autotrophic carbon inputs to soils. The goal of this study was to determine the effects of resource addition (water/organic matter) on the composition and function of microbial communities in the MDV along a natural salinity gradient representing an additional gradient of stress in an already extreme environment. Soil respiration and the activity of carbon-acquiring extracellular enzymes increased significantly (P < 0.05) with the addition of resources at the low- and moderate-salinity sites but not the high-salinity site. The bacterial community composition was altered, with an increase in Proteobacteria and Firmicutes with water and organic matter additions at the low- and moderate-salinity sites and a near dominance of Firmicutes at the high-salinity site. Principal coordinate analyses of all samples using a phylogenetically informed distance matrix (UniFrac) demonstrated discrete clustering among sites (analysis of similarity [ANOSIM], P < 0.05 and R > 0.40) and among most treatments within sites. The results from this experimental work suggest that microbial communities in this environment will undergo rapid change in response to the altered resources resulting from climate change impacts occurring in this region.     

Soil Microbial Community Response to Drought and Precipitation Variability in the Chihuahuan Desert

Increases in the magnitude and variability of precipitation events have been predicted for the Chihuahuan Desert region of West Texas. As patterns of moisture inputs and amounts change, soil microbial communities will respond to these alterations in soil moisture windows. In this study, we examined the soil microbial community structure within three vegetation zones along the Pine Canyon Watershed, an elevation and vegetation gradient in Big Bend National Park, Chihuahuan Desert. Soil samples at each site were obtained in mid-winter (January) and in mid-summer (August) for 2 years to capture a component of the variability in soil temperature and moisture that can occur seasonally and between years along this watershed. Precipitation patterns and amounts differed substantially between years with a drought characterizing most of the second year. Soils were collected during the drought period and following a large rainfall event and compared to soil samples collected during a relatively average season. Structural changes within microbial community in response to site, season, and precipitation patterns were evaluated using fatty acid methyl ester (FAME) and polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) analyses. Fungal FAME amounts differed significantly across seasons and sites and greatly outweighed the quantity of bacterial and actinomycete FAME levels for all sites and seasons. The highest fungal FAME levels were obtained in the low desert scrub site and not from the high elevation oak–pine forests. Total bacterial and actinomycete FAME levels did not differ significantly across season and year within any of the three locations along the watershed. Total bacterial and actinomycete FAME levels in the low elevation desert-shrub and grassland sites were slightly higher in the winter than in the summer. Microbial community structure at the high elevation oak–pine forest site was strongly correlated with levels of NH₄ ⁺–N, % soil moisture, and amounts of soil organic matter irrespective of season. Microbial community structure at the low elevation desert scrub and sotol grasslands sites was most strongly related to soil pH with bacterial and actinobacterial FAME levels accounting for site differences along the gradient. DGGE band counts of amplified soil bacterial DNA were found to differ significantly across sites and season with the highest band counts found in the mid-elevation grassland site. The least number of bands was observed in the high elevation oak–pine forest following the large summer-rain event that occurred after a prolonged drought. Microbial responses to changes in precipitation frequency and amount due to climate change will differ among vegetation zones along this Chihuahuan Desert watershed gradient. Soil bacterial communities at the mid-elevation grasslands site are the most vulnerable to changes in precipitation frequency and timing, while fungal community structure is most vulnerable in the low desert scrub site. The differential susceptibility of the microbial communities to changes in precipitation amounts along the elevation gradient reflects the interactive effects of the soil moisture window duration following a precipitation event and differences in soil heat loads. Amounts and types of carbon inputs may not be as important in regulating microbial structure among vegetation zones within in an arid environment as is the seasonal pattern of soil moisture and the soil heat load profile that characterizes the location.     

Association between Plant Canopies and the Spatial Patterns of Infiltration in Shrubland and Grassland of the Chihuahuan Desert,New Mexico

Shrubs have invaded extensive areas of grassland in the southwestern United States. The zones of nutrient-rich soil found beneath plant canopies, referred to as “islands of fertility,” are more intense and spaced farther apart in shrubland than in grassland. This difference in the spatial pattern of soil nutrients may reinforce shrub invasion. Changes in water availability in the soil could also influence shrub invasion. Here we compare the spatial patterns of infiltration, defined as the total equivalent water depth entering the soil following individual rainfall events or summed over many events, at adjacent grass- and shrub-dominated sites in the Sevilleta National Wildlife Refuge. We use two infiltration data sets. First, following four rainfall events, we measured soil moisture and wetting front depth at 10-cm intervals along 24-m transects. We estimate infiltration from these data. Second, we use vertical arrays of soil moisture probes to compare infiltration between adjacent canopies and interspaces following 31 storms. In both the grassland and shrubland, infiltration is typically greater beneath plant canopies than beneath interspaces. Canopies are oases where soil moisture is higher than in the surrounding areas. However, infiltration is not greater beneath canopies when surface runoff is limited. In the shrubland, the canopy–interspace infiltration ratio increases as storm size, and therefore runoff, increases. This relationship also exists in the grassland, but it is not as strong or clear. The magnitude of spatial variability of infiltration is similar in shrubland and grassland. In addition, the distance over which infiltration is correlated is approximately 50 cm in both environments. Most of the spatial variability exists between the stem and canopy margin in the shrubland and straddling the canopy margin in the grassland. The most notable difference is that subcanopy oases are spread farther apart in the shrubland because canopies are separated by larger interspaces in this environment. Received 30 October 2001; accepted 1 August 2002.     

Above- and belowground responses to nitrogen addition in a Chihuahuan Desert grassland

Increased available soil nitrogen can increase biomass, lower species richness, alter soil chemistry and modify community structure in herbaceous ecosystems worldwide. Although increased nitrogen availability typically increases aboveground production and decreases species richness in mesic systems, the impacts of nitrogen additions on semiarid ecosystems remain unclear. To determine how a semiarid grassland responds to increased nitrogen availability, we examined plant community structure and above- and belowground net primary production in response to long-term nitrogen addition in a desert grassland in central New Mexico, USA. Plots were fertilized annually (10 g N m⁻²) since 1995 and NPP measured from 2004 to 2009. Differences in aboveground NPP between fertilized and control treatments occurred in 2004 following a prescribed fire and in 2006 when precipitation was double the long-term average during the summer monsoon. Presumably, nitrogen only became limiting once drought stress was alleviated. Belowground NPP was also related to precipitation, and greatest root growth occurred the year following the wettest summer, decreasing gradually thereafter. Belowground production was unrelated to aboveground production within years and unrelated to nitrogen enrichment. Species richness changed between years in response to seasonal precipitation variability, but was not altered by nitrogen addition. Community structure did respond to nitrogen fertilization primarily through increased abundance of two dominant perennial grasses. These results were contrary to most nitrogen addition studies that find increased biomass and decreased species richness with nitrogen fertilization. Therefore, factors other than nitrogen deposition, such as fire or drought, may play a stronger role in shaping semiarid grassland communities than soil fertility.     

Relationship of Salt Marsh Vegetation Zonation to Spatial Patterns in Soil Moisture, Salinity, and Topography

An intertidal San Francisco Bay salt marsh was used to study the spatial relationships between vegetation patterns and hydrologic and edaphic variables. Multiple abiotic variables were represented by six metrics: elevation, distance to major tidal channels and to the nearest channel of any size, edaphic conditions during dry and wet circumstances, and the magnitude of tidally induced changes in soil saturation and salinity. A new approach, quantitative differential electromagnetic induction (Q-DEMI), was developed to obtain the last metric. The approach converts the difference in soil electrical conductivity (ECa) between dry and wet conditions to quantitative maps of tidally induced changes in root zone soil water content and salinity. The result is a spatially exhaustive map of edaphic changes throughout the mapped area of the ecosystem. Spatially distributed data on the six metrics were used to explore two hypotheses: (1) multiple abiotic variables relevant to vegetation zonation each exhibit different, uncorrelated, spatial patterns throughout an intertidal salt marsh; (2) vegetation zones and habitats of individual plant species are uniquely characterized by different combinations of key metrics. The first hypothesis was supported by observed, uncorrelated spatial variability in the metrics. The second hypothesis was supported by binary logistic regression models that identified key vegetation zone and species habitat characteristics from among the six metrics. Based on results from 108 models, the Q-DEMI map of saturation and salinity change was the most useful metric of those tested for distinguishing different vegetation zones and plant species habitats in the salt marsh.     

Consequences of Cool-Season Drought-Induced Plant Mortality to Chihuahuan Desert Grassland Ecosystem and Soil Respiration Dynamics

Predicted reductions of cool-season rainfall may expand and accelerate drought-induced plant mortality currently unfolding across the Southwest US. To assess how repeated plant mortality affects ecosystem functional attributes, we quantified net ecosystem CO₂ exchange (NEE), ecosystem respiration (R _eco), and gross ecosystem photosynthesis (GEP) responses to precipitation (P) at a semidesert grassland over spring (Feb 1–Apr 30) and summer (June 15–Oct 1) plant-active periods across eight years, including two with distinct patterns of extensive species-specific mortality. In addition, we quantified daily soil respiration (R _soil) in high- (56–88%) and low-mortality (8–27%) plots the summer following the most recent mortality event. Plant mortality coincided with severely dry cool-season conditions (Dec 1–Apr 30). We found a positive relationship between springtime P and GEP, and that springtime conditions influenced GEP response to summer rainfall. High springtime R _eco/GEP ratios followed plant mortality, suggesting increased available carbon after mortality was rapidly decomposed. R _soil in low-mortality plots exceeded high-mortality plots over drier summer periods, likely from more root respiration. However, total cumulative R _soil did not differ between plots, as variation in surviving plant conditions resulted in high and low C-yielding plots within both plot types. Vegetation status in high C-yielding R _soil plots was similar to that across the grassland, suggesting R _soil from such areas underlay higher R _eco. This, coupled to springtime drought constraints to GEP, resulted in positive NEE under summer P accumulations that previously supported C-sink activity. These findings indicate that predicted lower cool-season precipitation may strongly and negatively affect summer season productivity in these semiarid grasslands.     

Soil microbial and nutrient responses to 7 years of seasonally altered precipitation in a Chihuahuan Desert grassland

Soil microbial communities in Chihuahuan Desert grasslands generally experience highly variable spatiotemporal rainfall patterns. Changes in precipitation regimes can affect belowground ecosystem processes such as decomposition and nutrient cycling by altering soil microbial community structure and function. The objective of this study was to determine if increased seasonal precipitation frequency and magnitude over a 7‐year period would generate a persistent shift in microbial community characteristics and soil nutrient availability. We supplemented natural rainfall with large events (one/winter and three/summer) to simulate increased precipitation based on climate model predictions for this region. We observed a 2‐year delay in microbial responses to supplemental precipitation treatments. In years 3–5, higher microbial biomass, arbuscular mycorrhizae abundance, and soil enzyme C and P acquisition activities were observed in the supplemental water plots even during extended drought periods. In years 5–7, available soil P was consistently lower in the watered plots compared to control plots. Shifts in soil P corresponded to higher fungal abundances, microbial C utilization activity, and soil pH. This study demonstrated that 25% shifts in seasonal rainfall can significantly influence soil microbial and nutrient properties, which in turn may have long‐term effects on nutrient cycling and plant P uptake in this desert grassland.     

Differential Responses of Dipterocarp Seedlings to Soil Moisture and Microtopography

Niche diversification is prominent among the mechanisms proposed to explain tropical rain forest tree diversity, with many studies focusing on trade‐offs among shade tolerance and growth. Less obvious is the impact of occasional, ephemeral and often minor disturbances on tree seedling survival. We propose that differential tolerances to soil waterlogging can contribute to the distribution of tree seedling communities along microtopographical gradients. We test this hypothesis experimentally by evaluating survival and performance of planted seedlings across microtopographical gradients in a periodically inundated tropical rain forest environment. Survival and relative growth rates were assessed for six Shorea (Dipterocarpaceae) species in Sepilok Forest Reserve (Sabah, Malaysia) over a 2‐yr period, during which seedlings were subjected to two brief flooding events. The species were selected on the basis of soil habitat affinities, with two species being primarily associated with low‐lying alluvial flats subject to inundation, two being associated with non‐flooded mudstone hills, and two species occurring in both habitats. Seedling performance was related to microtopographic elevation within and among plots and to soil moisture among plots. The faster growing species, Shorea argentifolia, Shorea leprosula and Shorea parvifolia, tended to be more vulnerable to high soil moisture in terms of mortality than the three species with lower growth rates. Within plots, soil moisture was inversely correlated with microelevation, and seedlings located at higher microelevations had an increased probability of survival. Microtopographical differences in seedling position could therefore contribute to species assembly processes through differential mortality, particularly in areas subject to minor and ephemeral flooding events.     

Spatial distribution of Prosopis glandulosa var. torreyana in vegetation stripes of the southern Chihuahuan Desert

Mosaics consisting of vegetation stripes surrounded by bare areas have been described in several arid and semiarid ecosystems. The dynamics of the system depends on the redistribution of rainwater which is preferentially stored and evapotranspired in the vegetated stripes. A process of plant `colonization' in the upslope fringe of the stripes has been described in some cases and a consequent upslope migration of the stripes has been inferred, but not confirmed in all cases quoted in the literature. In this paper, we studied the spatial distribution of mesquite (Prosopis glandulosa var. torreyana) and the soil parameters in three vegetation stripes and their associated bare areas in the southern Chihuahuan Desert. The spatial distribution of mesquites of different sizes do not coincide with that expected under the hypothesis of an uniform upslope stripe migration, but soil data suggest that current bare areas had been vegetated some time ago. Dispersion and establishment abilities enhanced by overgrazing may explain the observed mesquite distribution, but the presence of trees with high basal diameters in any part of the stripes suggests stripe permanence at the same site and no upslope migration. These results point to the conflicting evidence on stripe migration that has been already found in other areas. The most probable scenario in our study area is that of a general long-term change of form of the stripes taking place at very variable speeds in different stripes, including the possibility that some of them remain stationary for prolonged periods, and showing different histories of colonization according to the life-history of the different species concerned. The speed and regularity of the process would show a very high temporal and spatial variability due to the interaction of climatic, geomorphologic and biotic interactions.     

The relative contributions of termites and microarthropods to fluff grass litter disappearance in the Chihuahuan Desert

Summary We tested the hypotheses that both subterranean termites and soil microarthropods are important in the disappearance of fluff grass (Erioneuron pulchellum) litter on the soil surface by an experiment designed to separate termite and microarthropod effects. Subterranean termites (Gnathamitermes tubiformans) removed more than 50% of the fluff grass litter in one year.Since there was no difference in mass loss of fluff grass with microarthropods present or excluded, they had no effect on decomposition of fluff grass litter. Microarthropod densities increased during the first 3 months then slowly decreased. The densities of microarthropods in fluff grass litter were too low to have a measurable effect on decomposition even if we assumed that the microarthropods consumed litter equivalent to their body weight each day.     

Effects of nitrogen amendment on annual plants in the Chihuahuan Desert

Effects of nitrogen amendments on spring annual plant distribution, primary production, and species diversity in a semi-arid environment were studied. The ecological responses of spring annual plant species to nitrogen differed between species, and between sites. The distribution of each species in a control transect was wider than in a nitrogen-treated transect. Annual plant species diversity at each station in the control transect was higher than that of the nitrogen-treated transect. The lower site of the Lower Basin Slope areas had the highest species diversity (0.94 for the control and 0.84 for the nitrogen-treated), and the Upper Basin Slope area, shrub vegetation zone, had the lowest species diversity (0.27 for the control and 0.05 for the nitrogen-treated) in both transects. Inorganic nitrogen in the nitrogen-treated transect soils was consistently higher than that in the control transect soils; however, the former showed more fluctuation from station to station than the latter. Above-ground biomass of spring annual plants in the nitrogen-treated transect was consistently higher than that in the control at each station. The maximum above-ground biomass in the control and nitrogen-treated transect was 24.4±4.4 gm⁻² and 61.2±10.6 gm⁻², respectively. Variations in above-ground biomass along the transect did not parallel with the variation in inorganic nitrogen in soils and species diversity.     

The spatial scale of homogenisation and differentiation in Chihuahuan Desert fish assemblages

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Cactus species turnover and diversity along a latitudinal transect in the Chihuahuan Desert Region

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