Quantifying the potential impact of alien plants of Iran using the Generic Impact Scoring System (GISS) and Environmental Impact Classification for Alien Taxa (EICAT)

Biological Invasions - Assessing the impacts of alien plant species is scientifically important and critical for supporting invasion-related policies. Generic Impact Scoring System (GISS) and...     

The Environmental Impact of Cambodia's Ancient City of Mahendraparvata (Phnom Kulen)

The Khmer kingdom, whose capital was at Angkor from the 9^th to the 14^th-15^th century, was founded in 802 by king Jayavarman II in a city called Mahandraparvata, on Phnom Kulen. Virtually nothing more is known of Mahandraparvata from the epigraphic sources, but systematic archaeological survey and excavation have identified an array of cultural features that point to a more extensive and enduring settlement than the historical record indicates. Recent remote sensing data have revolutionized our view, revealing the remains of a city with a complex and spatially extensive network of urban infrastructure. Here, we present a record of vegetation change and soil erosion from within that urban network, dating from the 8^th century CE. Our findings indicate approximately 400 years of intensive land use, punctuated by discrete periods of intense erosion beginning in the mid 9^th century and ending in the late 11^th century. A marked change in water management practices is apparent from the 12^th century CE, with implications for water supply to Angkor itself. This is the first indication that settlement on Mahendraparvata was not only extensive, but also intensive and enduring, with a marked environmental impact.     

Comparing Evolvability and Variability of Quantitative Traits

There are two distinct reasons for making comparisons of genetic variation for quantitative characters. The first is to compare evolvabilities, or ability to respond to selection, and the second is to make inferences about the forces that maintain genetic variability. Measures of variation that are standardized by the trait mean, such as the additive genetic coefficient of variation, are appropriate for both purposes. Variation has usually been compared as narrow sense heritabilities, but this is almost always an inappropriate comparative measure of evolvability and variability. Coefficients of variation were calculated from 842 estimates of trait means, variances and heritabilities in the literature. Traits closely related to fitness have higher additive genetic and nongenetic variability by the coefficient of variation criterion than characters under weak selection. This is the reverse of the accepted conclusion based on comparisons of heritability. The low heritability of fitness components is best explained by their high residual variation. The high additive genetic and residual variability of fitness traits might be explained by the great number of genetic and environmental events they are affected by, or by a lack of stabilizing selection to reduce their phenotypic variance. Over one-third of the quantitative genetics papers reviewed did not report trait means or variances. Researchers should always report these statistics, so that measures of variation appropriate to a variety of situations may be calculated.     

MRI-Based Intelligence Quotient (IQ) Estimation with Sparse Learning

In this paper, we propose a novel framework for IQ estimation using Magnetic Resonance Imaging (MRI) data. In particular, we devise a new feature selection method based on an extended dirty model for jointly considering both element-wise sparsity and group-wise sparsity. Meanwhile, due to the absence of large dataset with consistent scanning protocols for the IQ estimation, we integrate multiple datasets scanned from different sites with different scanning parameters and protocols. In this way, there is large variability in these different datasets. To address this issue, we design a two-step procedure for 1) first identifying the possible scanning site for each testing subject and 2) then estimating the testing subject’s IQ by using a specific estimator designed for that scanning site. We perform two experiments to test the performance of our method by using the MRI data collected from 164 typically developing children between 6 and 15 years old. In the first experiment, we use a multi-kernel Support Vector Regression (SVR) for estimating IQ values, and obtain an average correlation coefficient of 0.718 and also an average root mean square error of 8.695 between the true IQs and the estimated ones. In the second experiment, we use a single-kernel SVR for IQ estimation, and achieve an average correlation coefficient of 0.684 and an average root mean square error of 9.166. All these results show the effectiveness of using imaging data for IQ prediction, which is rarely done in the field according to our knowledge.     

Quantitative Fundus Autofluorescence for the Evaluation of Retinal Diseases

The retinal pigment epithelium (RPE) is juxtaposed to the overlying sensory retina, and supports the function of the visual system. Among the tasks performed by the RPE are phagocytosis and processing of outer photoreceptor segments through lysosome-derived organelles. These degradation products, stored and referred to as lipofuscin granules, are composed partially of bisretinoids, which have broad fluorescence absorption and emission spectra that can be detected clinically as fundus autofluorescence with confocal scanning laser ophthalmoscopy (cSLO). Lipofuscin accumulation is associated with increasing age, but is also found in various patterns in both acquired and inherited degenerative diseases of the retina. Thus, studying its pattern of accumulation and correlating such patterns with changes in the overlying sensory retina are essential to understanding the pathophysiology and progression of retinal disease. Here, we describe a technique employed by our lab and others that uses cSLO in order to quantify the level of RPE lipofuscin in both healthy and diseased eyes.     

Impact of Herbicides on Heterodera glycines Susceptible and Resistant Soybean Cultivars

Several abiotic and biotic stresses can affect soybean in a growing season. Heterodera glycines, soybean cyst nematode, reduces yield of soybean more than any other pathogen in the United States. Field and greenhouse studies were conducted to determine whether preemergence and postemergence herbicides modified the reproduction of H. glycines, and to determine the effects of possible interactive stresses caused by herbicides and H. glycines on soybean growth and yield. Heterodera glycines reproduction factor (Rf) generally was less on resistant than susceptible cultivars, resulting in a yield advantage for resistant cultivars. The yield advantage of resistant cultivars was due to more pods per plant on resistant than susceptible cultivars. Pendimethalin reduced H. glycines Rf on the susceptible cultivars in 1998 at Champaign, Illinois, and in greenhouse studies reduced dry root weight of H. glycines-resistant and susceptible cultivars, therefore reducing Rf on the susceptible cultivars. The interactive stresses from acifluorfen or imazethapyr and H. glycines reduced the dry shoot weight of the resistant cultivar Jack in a greenhouse study. Herbicides did not affect resistant cultivars'' ability to suppress H. glycines Rf; therefore, growers planting resistant cultivars should make herbicide decisions based on weeds present and cultivar tolerance to the herbicide.     

Quantitative Evaluation of Aldo-keto Reductase Expression in Hepatocellular Carcinoma (HCC) Cell Lines

The involvement of aldo–keto reductases (AKRs) in tumorigenesis is widely reported, but their roles in the pathological process are not generally recognized due to inconsistent measurements of their expression. To overcome this problem, we simultaneously employed real-time PCR to examine gene expression and multiple reaction monitoring (MRM) of mass spectrometry (MS) to examine the protein expression of AKRs in five different hepatic cell lines. These include one relatively normal hepatic cell line, L-02, and four hepatocellular carcinoma (HCC) cell lines, HepG2, HuH7, BEL7402 and SMMC7721. The results of real-time PCR showed that expression of genes encoding the AKR1C family members rather than AKR1A and AKR1B was associated with tumor, and most of genes encoding AKRs were highly expressed in HuH7. Similar observations were obtained through MRM. Different from HuH7, the protein abundance of AKR1A and AKR1B was relatively consistent among the other four hepatic cell lines, while protein expression of AKR1C varied significantly compared to L-02. Therefore, we conclude that the abundant distribution of AKR1C proteins is likely to be associated with liver tumorigenesis, and the AKR expression status in HuH7 is completely different from other liver cancer cell lines. This study, for the first time, provided both overall and quantitative information regarding the expression of AKRs at both mRNA and protein levels in hepatic cell lines. Our observations put the previous use of AKRs as a biomarker into question since it is only consistent with our data from HuH7. Furthermore, the data presented herein demonstrated that quantitative evaluation and comparisons within a protein family at both mRNA and protein levels were feasible using current techniques.     

Quantitative Evaluation of the Impact of Bather Density on Levels of Human-Virulent Microsporidian Spores in Recreational Water

Microsporidial gastroenteritis, a serious disease of immunocompromised people, can have a waterborne etiology. During summer months, samples of recreational bathing waters were tested weekly for human-virulent microsporidian spores and water quality parameters in association with high and low bather numbers during weekends and weekdays, respectively. Enterocytozoon bieneusi spores were detected in 59% of weekend (n = 27) and 30% of weekday (n = 33) samples, and Encephalitozoon intestinalis spores were concomitant in a single weekend sample; the overall prevalence was 43%. The numbers of bathers, water turbidity levels, prevalences of spore-positive samples, and concentrations of spores were significantly higher for weekend than for weekday samples; P values were <0.001, <0.04, <0.03, and <0.04, respectively. Water turbidity and the concentration of waterborne spores were significantly correlated with bather density, with P values of <0.001 and <0.01, respectively. As all water samples were collected on days deemed acceptable for bathing by fecal bacterial standards, this study reinforces the scientific doubt about the reliability of bacterial indicators in predicting human waterborne pathogens. The study provides evidence that bathing in public waters can result in exposure to potentially viable microsporidian spores and that body contact recreation in potable water can play a role in the epidemiology of microsporidiosis. The study indicates that resuspension of bottom sediments by bathers resulted in elevated turbidity values and implies that the microbial load from both sediments and bathers can act as nonpoint sources for the contamination of recreational waters with Enterocytozoon bieneusi spores. Both these mechanisms can be considered for implementation in predictive models for contamination with microsporidian spores.     

The Environmental Impact of Getting the News

The environmental impact associated with reading an on-line and a printed newspaper is analyzed and compared with respective parts of a television (TV) broadcast. Two reference units were chosen for comparison to account for differences between media in presentation and consumption (reading or watching a news item) and consumption of the daily news as a whole. The environmental impact is assessed using life-cycle assessment (LCA).
Key drivers of the environmental impact for both electronic delivery systems are energy consumption and power generation. Not only do the manufacturing of the products and their use have an environmental impact, but so does the use of the necessary infrastructure, that is, energy consumption of the telephone network or data transfer via Internet. Printing of on-line information also turned out to be important.
In the case of the printed newspapers, energy consumption is again important, here for the manufacturing of pulp and paper. Complete printed newspapers (the form in which they are typically purchased) have a very high environmental burden relative to watching the TV news or reading on-line news, even if the propensity to extend TV viewing is taken into consideration.     

Environmental Systems Analysis of Pig Production - The Impact of Feed Choice (12 pp)

Goal, Scope and Method The purpose of this environmental system analysis was to investigate the impact of feed choice in three pig production scenarios using substance flow models complemented by life cycle assessment methodology. The function of the system studied was to grow piglets of 29 kg to finished pigs of 115 kg. Three alternative scenarios of protein supply were designed, one based on imported soybean meal (scenario SOY); one based on locally grown peas and rapeseed cake (scenario PEA) and one based on Swedish peas and rapeseed meal complemented by synthetic amino acids (scenario SAA). The environmental impact of both feed production as such and the subsequent environmental impact of the feed in the pig production sub-system were analysed. The analysed feed ingredients were barley, wheat, peas, rapeseed meal, rapeseed cake, soybean meal and synthetic amino acids. The crude protein level of the feed affected the nitrogen content in the manure, which in turn affected nitrogen emissions throughout the system and the fertilising value of the manure, ultimately affecting the need for mineral fertiliser application for feed production. Results and Discussion The results showed that feed production contributed more than animal husbandry to the environmental burden of the system for the impact categories energy use, global warming potential and eutrophication, whereas the opposite situation was the case for acidification. The environmental impacts of scenarios SOY, PEA and SAA were 6.8, 5.3 and 6.3 MJ/kg pig growth; 1.5, 1.3 and 1.4 kg CO2-eq/kg pig growth; 0.55, 0.55 and 0.45 kg O2-eq/kg pig growth; and 24, 25 and 20 g SO2-eq/kg pig growth, respectively. The results suggested that scenario SAA was environmentally preferable, and that the reason for this was a low crude protein level of the feed and exclusion of soybean meal from the feed. Conclusions Feed choice had an impact on the environmental performance of pig meat production, not only via the features of the feed as fed to the pigs, such as the crude protein content, but also via the raw materials used, since the environmental impact from the production of these differs and since feed production had a large impact on the system as a whole.     

Comparing two versions of the Karolinska Sleepiness Scale (KSS)

Sleep and Biological Rhythms - The Karolinska Sleepiness Scale (KSS) is frequently used to study sleepiness in various contexts. However, it exists in two versions, one with labels on every other...     

A Novel Class of Herbicides (Specific Inhibitors of Imidazoleglycerol Phosphate Dehydratase)

A new mode of herbicidal action was established by finding specific inhibitors of imidazoleglycerol phosphate dehydratase, an enzyme of histidine (His) biosynthesis. Three triazole phosphonates inhibited the reaction of the enzyme with Ki values of 40 [plus or minus] 6.5, 10 [plus or minus] 1.6, and 8.5 [plus or minus] 1.4 nM, respectively, and were highly cytotoxic to cultured plant cells. This effect was completely reversed by the addition of His, proving that the cytotoxicity was primarily caused by the inhibition of His biosynthesis. These inhibitors showed wide-spectrum, postemergent herbicidal activity at application rates ranging from 0.05 to 2 kg/ha.     

Quantitative ballistocardiography (Q-BCG) for measurement of cardiovascular dynamics

In the seventies of the past century ballistocardiography had been thought to be obsolete in cardiology for impossibility of objective calibration. In the present work the quantitative ballistocardiography (Q-BCG) for measurement of systolic force (F) and minute cardiac force (MF) in sitting subject was described. The new principle of piezoelectric transducer enabled to register the force caused by the heart and blood movement, which was not measured before. The calibration proved that the action of the force on the transducer was expressed quantitatively without the amplitude-, time-, and phase deformation. The close relationship of skeletal muscle force and F was proved. The F and MF changed under different physiological conditions (age, partial pressure of oxygen, body weight, skeletal muscle force). It was shown that the systolic force (F) and minute cardiac force (MF) are the physiological parameters neurohumorally regulated similarly as the heart rate or systolic volume.     

Distance-to-Target Weighting in Life Cycle Impact Assessment Based on Chinese Environmental Policy for the Period 1995-2005 (6 pp)

Background and Objective

. Values in the known weighting methods in Life Cycle Assessment are mostly founded by the societal systems of developed countries. What source of weights and which weighting methods are reliable for a big developing country like China? The purpose of this paper is to find a possible weighting method and available data that will work well for LCA practices conducted in China. Since government policies and decisions play a leading role in the process of environmental protection in developing countries, the weights derived from political statements may be a consensus by representatives of the public.

Methods

'Distance-to-political target' principle is used in this paper to derive weights of five problem-oriented impact categories. The critical policy targets are deduced from the environmental policies issued in the period of the Ninth Five-year (1996-2000) and the Tenth Five-year (2001-2005) Plan for the Development of National Economy and Society of China. Policy targets on two five-year periods are presented and analyzed. Weights are determined by the quotient between the reference levels and target levels of a certain impact category.

Results and Discussion

Since the Tenth Five-year Plan put forward the overall objective to reduce the level of regional pollution by 2005, the weights for AP, EP and POCP for 2000-2005 are more than 1. By comparison between the Ninth Five-year and Tenth Five-year period, the results show that the weights obtained in this paper effectively represent Chinese political environmental priorities in different periods. For the weights derived from China's political targets for the overall period 1995-2005, the rank order of relative importance is ODP>AP>POCP>EP>GWP. They are recommended to the potential users for the broader disparity among the five categories. By comparison with the weights presented by the widespread EDIP method, the result shows that there's a big difference in the relative importance of ozone depletion and global warming.

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In conclusion, the weighting factors and rank order of impact categories determined in this study represent the characteristics of the big developing country. The derived weighting set can be helpful to LCA practices of products within the industrial systems of China.

     

Quantitative variation for apomictic reproduction in the genus Boechera (Brassicaceae)

? Premise of the study: The evolution of asexual seed production (apomixis) from sexual relatives is a great enigma of plant biology. The genus Boechera is ideal for studying apomixis because of its close relation to Arabidopsis and the occurrence of sexual and apomictic species at low ploidy levels (diploid and triploid). Apomixis is characterized by three components: unreduced embryo-sac formation (apomeiosis), fertilization-independent embryogenesis (parthenogenesis), and functional endosperm formation (pseudogamy or autonomous endosperm formation). Understanding the variation in these traits within and between species has been hindered by the laborious histological analyses required to analyze large numbers of samples. ? Methods: To quantify variability for the different components of apomictic seed development, we developed a high-throughput flow cytometric seed screen technique to measure embryo:endosperm ploidy in over 22000 single seeds derived from 71 accessions of diploid and triploid Boechera. ? Key results: Three interrelated features were identified within and among Boechera species: (1) variation for most traits associated with apomictic seed formation, (2) three levels of apomeiosis expression (low, high, obligate), and (3) correlations between apomeiosis and parthenogenesis/pseudogamy. ? Conclusions: The data presented here provide a framework for choosing specific genotypes for correlations with large "omics" data sets being collected for Boechera to study population structure, gene flow, and evolution of specific traits. We hypothesize that low levels of apomeiosis represent an ancestral condition of Boechera, whereas high apomeiosis levels may have been induced by global gene regulatory changes associated with hybridization.     

Predicting the Impact of the Biocontrol Agent Aulacidea subterminalis (Cynipidae) on Growth of Hieracium pilosella (Asteraceae) under Differing Environmental Conditions in New Zealand

A gall wasp, Aulacidea subterminalis, was released into the field in New Zealand in 1999 for biocontrol of the grassland weed Hieracium pilosella. To predict its likely impact in the field, the effect of the gall wasp on plant growth was measured under stress-free conditions in a shade house trial with potted plants. Plants with galls showed a reduction in stolon length of 75%. They had slightly lower total dry matter and reduced root weight. In a glasshouse experiment to measure the impact of water stress, nutrient stress, and plant competition on growth of H. pilosella and performance of the gall wasp, the number and mean diameter of gall clusters were not significantly different between treatment and control plants. However, galled plants produced more, but shorter, stolons in all stress treatments, and stolons that were more branched in nutrient- and water-stressed plants, than ungalled plants. Under the plant competition treatment, total stolon length relative to biomass was greater with, than without, wasps, indicating that stolons were thinner. Galling by A. subterminalis is likely to reduce vegetative reproduction of H. pilosella whether or not the plants are stressed, indicating that the wasp may be a successful biocontrol agent.     

Comparing ovulation synchronization protocols for artificial insemination in the scimitar-horned oryx (Oryx dammah)

Ovarian response and pregnancy success in scimitar-horned oryx (n=28) were compared, following treatment with two synchronization protocols and fixed-time artificial insemination (AI) with frozen-thawed semen. Each oryx received two injections of 500 microg of prostaglandin-F(2alpha) analogue (PGF(2alpha)-only) 11 days apart, and half received PGF(2alpha) in combination with an intravaginal progesterone-releasing device (CIDR11+PGF(2alpha)). Semen was collected by electroejaculation from anaesthetised adult oryx and cryopreserved. Anaesthetised females were transcervically inseminated 56.0+/-1.1 h (+/-S.E.M.) after PGF(2alpha) injection and/or device withdrawal using 28.0+/-1.5x10(6) motile thawed sperm. Ovarian endocrine response was monitored in 20 females by analysing faecal oestrogen and progesterone metabolites. Periovulatory oestrogen peaks were detected in 19/20 (95%) females after synchronization. There were no between-treatment differences in oestrogen concentrations or peak characteristics (P0.05). Luteal development after synchronization was delayed in half the progesterone treated (CIDR11+PGF(2alpha)) females, and faecal progestin excretion profiles indicated that the ovulatory follicle associated with synchronization either failed to ovulate or to fully lutenise. Pregnancy was diagnosed by ultrasonography and/or rectal palpation and was monitored by faecal progestin excretion. More (P=0. 013) pregnancies resulted from the PGF(2alpha)-only treatment (37.5%, 5/14) than from the CIDR11+PGF(2alpha) treatment (0/14), and four healthy scimitar-horned oryx calves were born, three after gestation intervals of 247 days and one after 249 days.     

Quantitative structure-activity relationship (QSAR) for neuroprotective activity of terpenoids

Neuroprotective activity of thirteen terpenoids on human neuroblastoma SH-SY5Y was evaluated in vitro by using a simulated ischemia model. The protective effects on ischemic damage ranged from 3.0% to 56.5%, and trans-4,11,11-trimethyl-8-methylenebicyclo[7,2,0]undec-4-ene (trans-caryophyllene) showed the highest neuroprotective activity. A quantitative structure-activity relationship (QSAR) model was developed for eleven terpenoids with significant neuroprotective activity using TSAR software. The QSAR study produced two equations with significant predictive values (r(2) and p value) and indicated that the activity was mainly governed by lipophilicity, shape index, and electrostatic property. This QSAR approach can contribute to a better understanding of structural properties of the terpenoids responsible for neuroprotection, and can be useful in predicting the neuroprotective activity of other terpenoids.