The temporal and spatial distribution, composition and abundance of Protozoa in Chaohu Lake, China: Relationship with eutrophication

Systematic investigations into the temporal and spatial distribution, composition and abundance of protozoa in two regions with different trophic levels in Chaohu Lake, a large, shallow and highly eutrophic freshwater lake in China, were conducted during 2002–2003. A total of 114 species of protozoa, including phytomastigophorans, zoomastigophorans, amoebae and ciliates, were identified from 120 polyurethane foam unit (PFU) samples exposed at four stations and from various types of natural substrates. Of the 114 taxa, 36 core species were found on PFU substrates and 23 of these were found on natural ones. Protozoan abundance and chemical–physical parameters at nine sampling stations, four in the western lake and five in the eastern part, indicate trophic gradient changes along the lake. Seasonal variations in the species composition of major groups at littoral PFU sampling stations illustrate the effect of a severe algal bloom on the protozoan community structure. Temporal and spatial distributions of individual abundance as functions of water temperature and trophic status were revealed. This study demonstrates again that the PFU artificial substrate method samples protozoan communities more effectively than routine natural substrate methods.     

Mid-Po River zooplankton

The temporal crustacean-zooplankton variation in the mid-Po River (Italy) was analyzed from November 1974 through November 1982. Samples were collected at three stations at monthly intervals.Separate taxon-by-taxon multiple regression analyses (MLTRG) were carried out with zooplankton taxa as the criterion variable and river depth, river discharge and water temperature as the predictor variables. Moina brachiata and Eucyclops serrulatus were correlated with water temperature, Cyclops vicinus inversely correlated with temperature, Eudiaptomus padanus, C. vicinus and Daphniidae with river discharge; Copepodites inversely correlated with river depth.MLTRG showed that water temperature and river discharge account for about 15% of total zooplankton variation.Factorial analysis of variance (ANOVA) was carried out on residuals calculated from MLTRG. Among-years and among-months variation were significant for all the examined taxa. Significant years × months interactions indicated that seasonal variations were also different in different years.ANOVA stressed that there were still unexplained significant residuals in years and months variations.Weekly and daily samples collected in Summer 1979 were submitted to MLTRG and ANOVA as above. Among-week variations were significant for all the examined taxa, whereas among-days were significant for Daphiidae and M. brachiata (Cladocera), and not significant for any of the other taxa. Caution is recommended in interpreting the results of river zooplankton studies. Differences between species responses warn us not to pool species into larger taxa. Temporal variation changes from year to year, so long-time series are necessary to clarify the most important trends of river zooplankton.     

Altitudinal replacement of Ephemeroptera in a subtropical river

An altitudinal sampling transect was established in a subtropical mountain river to determine if replacement between two mayfly faunal components (oligostenothermal and polystenothermal) occurred. We detected three main groups: Group A, species with high abundance at higher stations, declining abruptly downstream; Group B, species with maximum abundance at lower elevations; either declining abruptly upstream or absent from higher elevations; and Group C, species with little elevational change. The physical and chemical variables did not change abruptly with altitude during our winter sampling, although the distribution of groups A and B species did. The observed distributional patterns of groups A and B do not appear to be correlated with variations in the physical and chemical variables surveyed.     

Spatio-Temporal Variations of High and Low Nucleic Acid Content Bacteria in an Exorheic River

Bacteria with high nucleic acid (HNA) and low nucleic acid (LNA) content are commonly observed in aquatic environments. To date, limited knowledge is available on their temporal and spatial variations in freshwater environments. Here an investigation of HNA and LNA bacterial abundance and their flow cytometric characteristics was conducted in an exorheic river (Haihe River, Northern China) over a one year period covering September (autumn) 2011, December (winter) 2011, April (spring) 2012, and July (summer) 2012. The results showed that LNA and HNA bacteria contributed similarly to the total bacterial abundance on both the spatial and temporal scale. The variability of HNA on abundance, fluorescence intensity (FL1) and side scatter (SSC) were more sensitive to environmental factors than that of LNA bacteria. Meanwhile, the relative distance of SSC between HNA and LNA was more variable than that of FL1. Multivariate analysis further demonstrated that the influence of geographical distance (reflected by the salinity gradient along river to ocean) and temporal changes (as temperature variation due to seasonal succession) on the patterns of LNA and HNA were stronger than the effects of nutrient conditions. Furthermore, the results demonstrated that the distribution of LNA and HNA bacteria, including the abundance, FL1 and SSC, was controlled by different variables. The results suggested that LNA and HNA bacteria might play different ecological roles in the exorheic river.     

Investigations on the meiofauna and sediment of the Shatt Al-Arab near Basrah (Iraq)

SUMMARY. Sediment quality and meiofauna distribution were investigated in the Shatt Al-Arab near Basrah (Iraq). Four stations were fixed in a transect reaching from the eulittoral to the main channel of the river. The sediment was investigated with respect to wet mud density, dry mud density, water content, organic matter, calcareous substances, and allochthonous inorganic materials. There were no major differences between the sediments taken at the different stations. Sediment quality was not a limiting factor for the distribution of meiofauna; important factors were water current, light penetration and temperature. The current has a great influence on sediment structure, the main channel of the river had harder sediment consisting of clay. Because of high turbidity, light can reach the bottom only in shallow water at stations I and II; macrophytes were present only at these two stations. The highest numbers of invertebrates were found at station II (0.5 m depth). As water depth increased, the abundance of meiofauna decreased. Nevertheless, the number of individuals at station I (0.05 m) in the tidal zone was lower than at station II. This fact can be explained by the magnitude of changes of the environmental conditions, especially temperature and insolation. There were very large diurnal temperature fluctuations, fluctuating between 10 and 25°C on a single day. Many meiofauna species cannot tolerate such fluctuations and colonize mainly the deeper reaches of the river, which are continuously covered by water. Stronger currents in the middle of the river prevent the settlement of large numbers of animals in this area.     

Spatial and temporal variation of the ichthyoplankton in a subtropical river in Brazil

Studies that assess reproduction dynamics and ichthyoplankton distributions are scarce for the upper Uruguay River, especially in environments such as tributary mouths. Therefore, this study aimed to evaluate: (i) ichthyoplankton composition; (ii) spatial and temporal variation in ichthyoplankton abundance; and (iii) relationships between environmental variables and the abundance of ichthyoplankton during one annual cycle in this region. Monthly samples were collected from September 2001 to August 2002 in 48 h cycles at 6 h intervals between each sampling. Samples of eggs and larvae were collected from three of the main tributaries of the region (Ligeiro, Palomas and Chapecó rivers) and from three stretches of the Uruguay River near the confluence of these tributaries. Surface samples were collected with a 0.5 mm mesh cylindro-conical net. In general, reproductive seasonality was well-defined between October and February. It was most intense from November to January, when the photoperiod reached its highest values, flow was decreased, and the water temperature was increased. Based on egg and larval distributions, we found that spawning occurred mainly in the Ligeiro and Chapecó tributaries and in the Uruguay/Chapecó section. In contrast, fish spawning in the sites downstream of dams was more restricted. Finally, a difference was observed between the egg and larval distributions of the main river and its tributaries: the greatest reproductive activity in the tributaries occurred during periods of high flow and increased water temperature, while in the main river, more eggs and larvae were observed when the flow decreased and the water temperature increased.     

Dynamic of Virioplankton Abundance and Its Environmental Control in the Charente Estuary (France)

The Charente River provides nutrient- and virus-rich freshwater input to the Marennes Oléron Basin, the largest oyster-producing region in Europe. To evaluate virioplankton distribution in the Charente Estuary and identify which environmental variables control dynamic of virioplankton abundance, five stations defined by a salinity gradient (0–0.5, 0.6–5, 13–17, 20–24, and higher than 30 PSU) were surveyed over a year. Viral abundance was related to bacterioplankton abundance and activities, photosynthetic pigments, nutrient concentration, and physical parameters (temperature and salinity). On a spatial scale, virus displayed a decreasing pattern seaward with abundance ranging over the sampling period from 1.4 × 10⁷ to 20.8 × 10⁷ viruses mL⁻¹ making virioplankton the most abundant component of planktonic microorganisms in the Charente Estuary. A good correlation was found between viral and bacterial abundance (r_s = 0.85). Furthermore, bacterial abundance was the most important predictor of viral abundance explaining alone between 66% (winter) and 76% (summer) of viral variability. However, no relation existed between viral abundance and chlorophyll a. Temporal variations in viral distributions were mainly controlled by temperature through the control of bacterial dynamics. Spatial variations of viral abundance were influenced by hydrodynamic conditions especially during the winter season where virioplankton distribution was entirely driven by mixing processes.     

The distribution of dissolved DNA in an oligotrophic and a eutrophic river of Southwest Florida

The distribution of dissolved DNA concentrations and some microbial variables were compared in an oligo-mesotrophic river (the Crystal River) and a phosphate-rich eutrophic river (the Alafia River) in Southwest Florida over a 15 month period. Concentrations of phosphate and nitrate in the Alafia River averaged 135 and 18.2 times the respective phosphate and nitrate concentrations of the oligo-mesotrophic Crystal River. The seasonal average dissolved DNA concentration for the Alafia River exceeded that of the Crystal River by a factor of 1.8 (8.2 g 1^–1 compared to 4.6 g 1^–1, respectively). The greatest concentrations of dissolved DNA in the Alafia River were found in areas that contained the largest populations of phytoplankton and bacteria (a reservoir formed from an abandoned phosphate mining pit and two downstream stations near the mouth of the river). Differences in dissolved DNA concentrations between these environments and more pristine environments (i.e. all Crystal River Stations and upstream Alafia River stations) were of the same order of magnitude (1.8 to 2.2-fold) as the differences in bacterial abundance and activity, but considerably less than differences in phytoplankton abundance and activity between such environments. Seasonal variations in dissolved DNA concentrations in the Crystal River corresponded to seasonal variations in microbial populations, with minimal values in January and greater values in July. In the Alafia River, lowest concentrations for dissolved DNA occurred in July during the wet season, when seasonal flooding of area of leaf litter yielded high levels of dissolved organic carbon (DOC) which were low in dissolved DNA. These results suggest that: 1) in situ planktonic activity is a greater source of dissolved DNA than allochthonous or terrestrial sources of DOC; 2) factors that control the magnitude of heterotrophic bacterial populations are more likely to control dissolved DNA levels than factors regulating autotrophic population activity and abundance; 3) differences in dissolved DNA between eutrophic and oligo-mesotrophic environments are often much smaller than the differences in nutrient concentration between such environments.     

Can an indicator of river health be related to assessments from a catchment-scale sediment model?

The accumulation of sand and fine gravel (<5 mm diameter) on riverbeds can adversely affect benthic macroinvertebrates, which are good indicators of the ecological health of rivers. The possibility arises, therefore, that predictions of sedimentation could form a useful proxy for indicating the health of a river. The Sediment River Network Model (SedNet) constructs sediment budgets to predict the depth of bed material accumulation (BMA) in each link of a river network. This study tests whether the predicted BMA depth was associated with spatial differences in macroinvertebrate community structure, in the Upper Murrumbidgee River catchment of southeast Australia. There was a significant, albeit limited, correlation. Riffle sites with low BMA depth (0–0.01 m) had a significantly different macroinvertebrate community structure compared to sites with medium (0.01–0.3 m) or high (>0.3 m) BMA depth. At these sites, taxa sensitive to habitat were in greater abundance when BMA depth was low. Additionally, riffle sites with high predicted BMA depth had lower values for three macroinvertebrate community structure measures—AUSRIVAS observed-to-expected (OE) taxa ratio, Ephemeroptera abundance and Plecoptera abundance. There was no significant difference in macroinvertebrate community structure between sites with medium and high levels of BMA depth. Possible reasons for this result are: (1) there may have been few sites in the high and medium categories to provide sufficient statistical power to detect a significant difference; (2) spatial variation in BMA depth within SedNet river links; or (3) only a minimal amount of BMA is required to change community structure. To further define spatial variation in biological damage from BMA, data are required on the spatial scale of variations in BMA depth and damage to macroinvertebrate community structure.     

Some distributional characteristics of small zooplankton at two stations in the Otranto Strait (Eastern Mediterranean)

The qualitative composition, numerical abundance and vertical distribution of protozoan and microcopepod communities were studied in the Otranto Strait at two stations during five cruises from August 1986 to May 1990. The samples were collected with a plankton net of 53-m mesh size equipped with a closing system in six or seven vertical layers. The principal component analysis (PCA) was used to analyse the spatial and temporal variability of small zooplanktonic assemblages. Data are presented for 36 species of radiolarians, 46 tintinnines and for 22 oncaeid copepods. Differences between the eastern shore and the western shore were not significant, according to the PC analysis of the total density values for all assemblages. However, on the basis of the distribution of PC loadings, it was possible to distinguish three vertical layers whose variability contributes in different amounts to the total variability in the small zooplankton community at both stations. The water masses have crucial significance for the spatial and seasonal distribution of all assemblages. Each type of water mass is connected by the presence of characteristic species.     

雅鲁藏布江流域NDVI变化与风沙化土地演变的耦合关系

运用1982-2010年的两种NDVI数据集（Pathfinder AVHRR和SPOT VEGETATION）,以及1975、1990、2000和2008年4期遥感数据,通过GIS技术、人工目视解译和灰色关联分析方法,研究了雅鲁藏布江流域NDVI变化和风沙化土地演变的耦合关系,结合1957-2007年降水和气温逐日气象资料,探讨了气候变化对其耦合关系的影响。结果表明：（1）流域内1982-2010年NDVI的年际变化总体上呈波动式增长的趋势。NDVI空间分布呈现由下游向中上游逐渐降低的趋势,以米林宽谷最大、马泉河宽谷最小。（2）2008年流域内共有风沙化土地273 697.54hm²,呈现由江源区马泉河宽谷向中下游递减的趋势。1975-2008年流域内风沙化土地呈缓慢增长趋势,以1990-1999年增长率最高,2000-2008年的增长率最小。（3）对于NDVI年变化和植被生长季（7-9月份）的变化,马泉河宽谷受平均气温的影响最大,日喀则宽谷和山南宽谷受年降水量的影响最大;米林宽谷NDVI的年变化受风沙化土地扩展的影响最大,植被生长季变化受年降水量的影响最大。（4）不同宽谷段NDVI与风沙化土地年变化的关联度自下游向中上游呈总体减小的趋势。流域尺度NDVI植被生长季变化主要受平均气温和年降水量的影响,非植被生长季（10月-翌年6月）变化主要受风沙化土地扩展的影响。     

水坝拆除对黑水河鱼类群落结构和空间分布的影响

水坝拆除引起河流连通性、水动力、河流地貌等一系列变化,直接影响了鱼类群落结构和空间分布。黑水河为金沙江左岸一级支流,其上共建四级电站,出于支流生境恢复需求,第四级水坝老木河水坝于2018年12月实行拆除。为探明低水头坝拆除对鱼类群落的影响,结合2018年6月和2019年6月黑水河下游60.4km河段10个点位的渔获物调查,对拆坝前后鱼类群落结构和生态类型变化、优势物种与单位捕捞努力量以及不同河段间的群落相似性进行了分析。结果表明,水坝拆除半年后优势物种仍以鲤科和鳅科为主,但物种数和丰度整体上增加;生态类型上以杂食、喜急流和产微粘性卵鱼为主;拆坝后鱼类群落空间分布变化明显,靠近河口的自然河段鱼类上溯洄游到原坝址的上下游,部分长江上游特有鱼类在原坝址附近发生定殖行为,且拆坝后各河段的鱼类组成结构有同质化趋势。总体上,老木河水坝的拆除对黑水河下游的鱼类群落结构和空间分布产生了积极的影响。     

Spatial and temporal variation in assemblage structure of fish larvae in mediterranean–type streams: contrasts between native and non-native species

Larval fish ecology remains poorly understood in freshwater ecosystems. This study analysed the larval ecology of native and non-native fishes in a mediterranean-type watershed in Southern Iberian Peninsula. Assemblage structure of fish larvae was quantified at four distinct rivers sites, every 2 weeks between March and October 2004, and analysed against 16 variables reflecting river flow, temperature and habitat context. There was considerable spatial variation in taxonomic richness and abundance of larval assemblages, with either native or non-native fishes dominating in different sites. There was also a clear temporal separation between native and non-native fishes, with native cyprinids generally peaking earlier in the year than non-native fishes. Temporal fluctuations in larval assemblages across sites were mostly associated with variations in water temperature and transparency, but flow was an important factor shaping local assemblage structure. Larvae of native fishes appeared to found most suitable conditions in naturally flowing sites early in spring, when flow is high and water temperature stills low. These results suggest that preservation of natural flow peaks and adequate thermal contexts may be crucial for conservation of native fish fauna in mediterranean-type streams.     

Black spot infection in juvenile steelhead trout increases with stream temperature in northern California

Climate change will increase water temperature in rivers and streams that provide critical habitat for imperiled species. Warmer water temperatures will influence the intensity and nature of biotic interactions, including parasitism. To better understand the factors influencing a neascus-type parasitic infection known as black spot disease, we examined the relationship between infection rate in juvenile steelhead trout (Oncorhynchus mykiss), abundance of another intermediate host (ramshorn snail, Planorbella trivolvis), and water temperature. We quantified infection patterns of trout at seven sites within the South Fork Eel River in northern California, visiting each site on three different occasions across the summer, and recording water temperature at each site. We also quantified infection patterns in trout captured from two tributaries to the South Fork Eel River. Overall, trout infection rates were highest in sites with the warmest temperatures. The abundance of ramshorn snails was positively related to both water temperature and black spot infection rates in juvenile trout. Both snail abundance and infection rates increased rapidly above a 23 °C daily maximum, suggesting a threshold effect at this temperature. We suggest that warmer temperatures are associated with environmental and biotic conditions that increase black spot disease prevalence in threatened steelhead trout. A comparison of our results with similar data collected from a more northern latitude suggests that salmonids in California may be warm-adapted in terms of their parasite susceptibility.     

珠三角河网水域栅藻的时空分布特征

珠三角河网水域是珠江之水流入南海的必经之地,对2012年该水域浮游植物群落中的栅藻种类丰富度和生物量的时空特征及其环境影响因子进行系统阐析。调查期间共发现栅藻24种(包括变种、变型),其中具刺和无刺种类分别为11种和13种。出现率高且生物量贡献率大的物种仅3种,包括被甲栅藻原变种(Scenedesmus armatus var.armatus)、被甲栅藻博格变种双尾变型(S.armatus var.boglariensis f.bicaudatus)和二形栅藻(S.dimorphus),分析认为这3个物种在栅藻种群中的生态优势很可能与其形态特征存在一定的关联。栅藻种类丰富度的季节分布呈现丰水期高于枯水期的特征,空间分布呈现河网中部站位低于外侧站位的特征。此外,种类丰富度的空间分布格局存在季节差异,丰水季节呈现河网中部站位明显低于外侧站位的特征,而枯水季节西江沿线站位种类丰富度明显偏低。分析认为,水温和径流是影响栅藻种类丰富度季节变动的关键因素;同时,径流也是影响总种类丰富度空间分布格局的关键因素,而水温和营养盐是影响不同季节种类丰富度的空间格局的重要因素。栅藻种群生物量的季节分布呈现丰水期高于枯水期的特征,空间分布表现为珠江桥站位的生物量明显高于其它站位。分析认为,径流和水温是决定种群生物量季节变动的关键因素,而营养盐、水体稳定性和盐度是决定生物量空间分布格局的关键因素。栅藻生物量与种类丰富度的关系基本符合单峰模型,且偏重于单峰模型的上升区,丰富了全球多样性模式的分级特征和区域特征。     

Seasonal variability in chromophoric dissolved organic matter in the Sakawa River and Sagami Bay, Japan

We investigated the chromophoric dissolved organic matter (CDOM) of river water in the Sakawa River and of surface water in the vicinity of the river’s mouth in Sagami Bay, Japan, during the period from July 2003 to July 2004. Absorption by CDOM was modeled as a logarithmic function. As a qualitative index of CDOM, the slope (S) of this function was estimated for a wavelength range from 280 to 500 nm. As a quantitative index of CDOM, the integration of absorption was determined between 280 and 500 nm (Σ ₂₈₀ ⁵⁰⁰ a _CDOM). High seasonal variability of S values was observed at the marine station. The S values at the upstream stations were related to chlorophyll a concentrations but not to bacterial abundance, whereas the integrated values at upstream stations were correlated with precipitation. Seasonal variability in the integrated values was low at the downstream stations, where the effect of effluent from nonpoint sources and sewage treatment plants was strong. Anthropogenic CDOM at the downstream stations appeared to be degraded by microbial utilization and photodegradation, whereas terrestrially derived CDOM at the upstream stations was less degraded. These qualitative differences in CDOM and the marked effect of dilution by seawater near the Sakawa River mouth suggest that the dynamics of CDOM in riverine and coastal environments should be studied with careful consideration of both spatial and temporal variations, particularly in small estuaries.     

Zooplankton distribution and dynamics in a temperate shallow estuary

The spatial, temporal and tidal dynamics of the zooplanktonic community of the Mondego estuary was studied from January 2003 to 2004. The monthly sampling procedure included the measurement of hydrological parameters (salinity, temperature, Secchi transparency, chlorophyll a and nutrients) and the collection of zooplankton with a Bongo net of 335 μm mesh size. Zooplankton composition, distribution, density, biomass and diversity were determined. The principal component analysis (PCA) revealed the existence of a spatial gradient with the upstream sampling stations, associated to high values of nutrients, in opposition to the downstream stations characterized by higher salinity and transparency values. The Copepoda was the main dominant group and Acartia tonsa revealed to be the more abundant taxon. The spatial and temporal dynamics of zooplanktonic communities analysed by non-metric MDS showed the existence of four assemblages of species-sites, reflecting differences in zooplankton composition between both branches of the estuary. The results suggest that abundance, biomass and diversity of the zooplanktonic community are strongly influenced by the hydrological circulation pattern and by direct or indirect human impacts that occur in each branch. The northern branch is dominated by the river flow suffering from regular dredging activities and the southern branch is dominated by tidal circulation suffering from an ongoing eutrophication process.     

黄海中南部越冬鳀鱼空间分布及其与水温年际变化的关系

利用1986-2010年的底拖网调查数据和遥感海表温度,基于GIS技术,通过空间分析和相关性分析等方法,研究黄海中南部水域越冬鳀鱼空间分布的年际变化,并探讨其与水温变化的关系.结果表明:1986-2010年鳀鱼空间分布的年际变化明显,2004年其资源丰度下降至最低且向岸分布,2010年资源丰度有所回升并在东部水域集中分布,鳀鱼捕获站位、资源密度在经纬度方向上的分布集中区域年际变化明显;鳀鱼资源密度重心纬度与代表性等温线平均纬度的变化趋势相一致,表明水温变化影响越冬鳀鱼纬度方向上的分布,但其向岸分布趋势则由黄海暖流的年际变动决定;在影响鳀鱼分布的众多因子中,资源丰度变化主要受捕捞压力的影响,而空间上的变化主要由海水温度决定.     

Temporal and spatial distribution patterns of echinoderm larvae in La Parguera, Puerto Rico

This study describes temporal and spatial abundance patterns of echinoderm larvae in La Parguera, Puerto Rico. For the temporal study, larvae were sampled by a series of monthly tows taken with a 64 microm mesh net between the new and full moon from April 2005 to July 2006, September 2006 and August 2007. In order to measure spatial variation of echinoderm larval abundances, oblique tows were taken with 64 and 202 microm mesh nets at seven different sites within the shelf, at the shelf-edge, and at a nearby oceanic stations during August 2007. Overall, Echinoidea (sea urchin) exhibited the highest abundance with a total of 11 921 larvae, representing 52.5% of the total collection. Ophiuroidea (brittle star) ranked second in abundance with 45.6% of the total larvae. Holothuroidea (sea cucumber) and Asteroidea larvae (sea star) accounted for less than 2% of the total echinoderm larval collection. Early larval stages (2-8 day old) of Diadema antillarum represented 20% of the total Echinoidea larvae. There was no marked seasonal trend of echinoderm larval abundance; Echinoidea and Ophiuroidea larvae were present in all monthly samples indicating that reproduction occurs year-round. Peak abundances of later-stage Echinoidea larvae were observed during January, July and October and of later-stage Ophiuroidea larvae during June, August and October. The observed peaks of later-stage larval abundances may be indicative of higher recruitment activity during these months. There was a significant difference of echinoderm larval abundance between spatial stations, with higher abundances collected at the shelf-edge. Later-stage (approximately 24 day old) D. antillarum larvae were mostly collected at shelf-edge and oceanic locations. In addition, the 64 microm mesh net was more efficient for collection of echinoderm larvae than the 202 microm mesh net.     

Factors determining length distribution and abundance of the European eel, Anguilla anguilla, in the River Mondego (Portugal)

1. The distribution and abundance of the European eel, Anguilla anguilla, were investigated in the Mondego River, a strongly modified river in central Portugal. Nine freshwater sites, located below the first impassable obstacle to eel migration, were surveyed for 2 years. The study was conducted monthly during the first year and seasonally during the second year. Fish were caught by electric fishing and, physical and biotic variables potentially influencing eel length distribution and abundance were determined at each sampling session. 2. Canonical correspondence analysis (CCA) was used to explain the relationships between abiotic and biotic habitat variables, and eel length distribution. Spatial variation was strongly associated with distance from the sea, number of obstacles, river width and percentage of instream cover. Depth, river flow, water temperature and cannibalism had weaker effects on the longitudinal distribution, but contributed as explanatory variables for the model. The influence of spatial variables outweighed the importance of temporal variables as predictors in this model. 3. Length distribution changed in space from a dominance of small eels (<100 mm) closer to the sea to larger eels (≥250 mm) in the upper reaches of the river. The smallest length class (eels <100 mm) was strongly associated with wider stretches where instream cover, mainly composed of aquatic submerged macrophytes, was abundant (>75% area coverage). On the contrary, larger eels (≥250 mm) preferred deeper stretches with stronger river flow and less instream cover. 4. The effect of biotic interactions with conspecifics as well as with the non‐native red swamp crayfish Procambarus clarkii, in sites with poor instream cover, modified this general pattern of distribution leading to fewer eels <100 mm at some sites closer to the sea. Therefore, despite the ubiquity and plasticity shown by this species, there were clear ontogenetic variations in habitat use such that the first two canonical axes of a CCA accounted for 58.4% of the spatial variability in size structure.