Population structure and intraspecific aggression in the invasive ant species Anoplolepis gracilipes in Malaysian Borneo

Invasive species are one of the main sources of the ongoing global loss of biodiversity. Invasive ants are known as particularly damaging invaders and their introductions are often accompanied by population-level behavioural and genetic changes that may contribute to their success. Anoplolepis gracilipes is an invasive ant that has just recently received increased attention due to its negative impact on native ecosystems. We examined the behaviour and population structure of A. gracilipes in Sabah, Malaysia. A total of 475 individuals from 24 colonies were genotyped with eight microsatellite markers. Intracolonial relatedness was high, ranging from 0.37 to 1 (mean +/- SD: 0.82 +/- 0.04), while intercolonial relatedness was low (0.0 +/- 0.02, range -0.5-0.76). We compared five distinct sampling regions in Sabah and Brunei. A three-level hierarchical F-analysis revealed high genetic differentiation among colonies within the same region, but low genetic differentiation within colonies or across regions. Overall levels of heterozygosity were unusually high (mean H(O) = 0.95, mean H(E) = 0.71) with two loci being entirely heterozygous, indicating an unusual reproductive system in this species. Bioassays revealed a negative correlation between relatedness and aggression, suggesting kinship as one factor facilitating supercolony formation in this species. Furthermore, we genotyped one individual per nest from Sabah (22 nests), Sarawak (one nest), Brunei (three nests) and the Philippines (two nests) using two mitochondrial DNA markers. We found six haplotypes, two of which included 82.1% of all sequences. Our study shows that the sampled area in Sabah consists of a mosaic of differently interrelated nests in different stages of colony establishment. While some of the sampled colonies may belong to large supercolonies, others are more likely to represent recently introduced or dispersed propagules that are just beginning to expand.     

Ecological impacts of oil palm agriculture on forest mammals in plantation estates and smallholdings

Global oil palm expansion has caused substantial ecological damage to tropical biodiversity. We quantified wild mammal richness in large oil palm plantation estates and semi-traditional oil palm smallholdings in Peninsular Malaysia. We sampled 41 plantation estates and 14 smallholdings, and used line-transect surveys coupled with semi-structured interviews to develop a database of the native mammals found in oil palm landscapes. Semi-structured interviews revealed a total of 32 mammal species, including 13 IUCN Red Listed taxa of high conservation value. Our results showed that human activity and the size of patches of remnant rainforest were important factors influencing the richness of mammal species in oil palm landscapes. More carnivorous and herbivorous species were reported in smallholdings than plantation estates, most probably as a response to greater habitat heterogeneity in smallholdings. All species, irrespective of conservation status, were more likely to be recorded in oil palm plantation estates and smallholdings that supported large areas of native forest. Our findings suggest that biodiversity conservation in oil palm landscapes will require a variety of conservation approaches. Minimizing poaching, reducing disturbance from human activity, and protecting existing forest patches appear particularly important. Strategies to promote the persistence of both high and low conservation value species should be adopted as part of a strengthened certification scheme for oil palm production.     

Exploring arboreal ant community composition and co-occurrence patterns in plantations of oil palm Elaeis guineensis in Borneo and Peninsular Malaysia

The oil palm, Elaeis guineensis , is a native of West Africa and is now extensively grown in south-east Asia. In 2005, the crop covered four million ha of Malaysia. We examined the arboreal ant fauna in two oil palm plantations that had been farmed with integrated pest management practices for at least 10 yr. Having cut and examined palm fronds from 595 and 503 palms in Borneo and Peninsular Malaysia respectively, we studied diversity in ant assemblages, analysed composition of ant mosaics by stepwise use of null-models, and explored the influence of exotic vs native species on community structure. Altogether we sampled 52 species of canopy ants, of which 23 species were shared between Borneo and Peninsular Malaysia. Seventeen species in Borneo and 24 species in Peninsular Malaysia accounted for 95% of all species occurrences (SOCs). Fortysix percent of all SOCs belonged to 12 tramp ant species with pan-tropical distributions. Forty percent of all SOCs were exotic ants. Six dominant species were found in Borneo, five in the Peninsula. The three most abundant species, Anoplolepis gracilipes , Oecophylla smaragdina and Technomyrmex albipes were dominant in both sites. Three dominants were invasive species that were found on more palms than the native group. Dominant tramp species coexisted with non-dominants more often and tolerated more species of non-dominant ants than native dominants. Null model analyses indicated that species were arranged in mosaics at both the Peninsular Malaysia and Borneo sites. Dominant species showed much less co-occurrence than expected by chance, pointing towards species segregation (even in presence of introduced, invasive species). Similar results were obtained for all species. Non-dominant ants were either positively associated with their dominants, or co-occurred randomly in the presence of dominant species. In contrast, ant assemblages on palms without dominants showed species segregation.     

Effects of oil palm plantations on habitat structure and fish assemblages in Amazon streams

The aim of this research is to assess the effects of oil palm plantations on stream habitat and their fish assemblage diversity. We hypothesize that streams which drain through oil palm plantations tend to be less heterogeneous, limiting the occurrence of many species, than streams that drain through forest fragments, which support higher fish diversity. A total of 17 streams were sampled; eight in forest fragments and nine in oil palm plantations. Environmental and biological variables were sampled along 150 m stretch in each stream. Of the 242 environmental variables measured, ten were considered important to assess the condition of structural habitat, and out of these variables, four were considered relevant in the distinction between streams in oil palm plantations and forest fragments. A total of 7245 fishes were collected, belonging to 63 species. Unlike our original hypothesis, the species richness did not differ between forest fragment and oil palm plantations streams, showing that it is not a good divert measure in streams disturbance assessment. However, fish assemblages differed in species composition, and 56 species were recorded in oil palm plantation streams, while 44 species were recorded in forest fragments streams. Some species were identified as indicators of either altered (Aequidens tetramerus and Apistogramma agassizii) or undisturbed areas (Helogenes marmoratus). Overall, oil palm plantations were proven to change stream habitat structure and fish species distribution, corroborating other studies that have evidenced changes in patterns of biological community structure due to impacts by different land uses.     

Mycorrhizal status of epiphytes in Malaysian oil palm plantations

Epiphytic plants were collected from four oil palm plantations in Peninsular Malaysia and their mycorrhizal status determined. Conspecific plants with a terrestrial habit (16 species) and rhizosphere soils were also examined for mycorrhizal colonization and glomalean fungi, respectively. Twelve species of glomalean fungi were recovered from the four oil palm plantation soils. Of the 29 epiphytic species in 16 families belonging to the bryophytes, pteridophytes and angiosperms, only four species of angiosperms that were facultative epiphytes and a hemiepiphyte growing within 0.4 m of ground level had vesicular-arbuscular mycorrhizal (VAM) fungi. Bioassays of organic debris from oil palm trunks did not produce vesicular-arbuscular mycorrhizas on maize. Six epiphytic species grown in the greenhouse in pots containing oil palm rhizosphere soils rooted and had VAM fungi and thus may be facultative epiphytes. Five other epiphyte species failed to grow in pots and are probably obligate epiphytes. Seven epiphyte species that established themselves in pots failed to form vesicular-arbuscular mycorrhizas.     

Inter-annual dynamics and persistence of small mammal communities in a selectively logged tropical forest in Borneo

Understanding temporal change and long-term persistence of species and communities is vital if we are to accurately assess the relative values of human-modified habitats for biodiversity. Despite a large literature and emerging consensus demonstrating a high conservation value of selectively logged tropical rainforests, few studies have taken a long-term perspective. We resampled small mammals (≤?1 kg) in a heavily logged landscape in Sabah, Borneo between 2011 and 2016 to investigate temporal patterns of species-level changes in population density. We found that small mammal population density in heavily logged forest was highly variable among years, consistent with patterns previously observed in unlogged forest, and uncovered evidence suggesting that one species is potentially declining towards local extinction. Across nine species, population densities varied almost sevenfold during our 6-year study period, highlighting the extremely dynamic nature of small mammal communities in this ecosystem. Strictly terrestrial murid species tended to exhibit strong temporal dynamics, whereas semi-arboreal foraging species such as treeshrews had more stable dynamics. We found no relationships between population density and fruit/seed mass, and therefore no evidence that our patterns represent responses to inter-annual mast fruiting of the dominant canopy dipterocarp trees. This may be due to the removal of most of the canopy during logging, and hence the dipterocarp seed resource, although it possibly also reflects spatiotemporal limitations of our data. Our results underline the importance of understanding long-term variability in animal communities before developing conservation and management recommendations for human-altered ecosystems.     

Fuelling the biodiversity crisis: species loss of ground-dwelling forest ants in oil palm plantations in Sabah,Malaysia (Borneo)

Oil palm plantations today cover large areas of former tropical lowland rain forest in Southeast Asia and are rapidly expanding on the island of Borneo. Study of the community of ground-dwelling ants in different plantations in Sabah, Malaysia, over 2 years using tuna baiting, revealed that the oil palm plantation ground ant community was severely reduced in species richness in comparison to the forest interior, regardless of age, undergrowth cover, or proximity to neighbouring forest. The results indicate that oil palm plantation habitats, now covering more than 15% of Sabah’s land area, can sustain only about 5% of the ground-dwelling ant species of the forest interior. Nine of the 23 ant species baited in the plantations were never recorded inside forest. All numerically dominant ants were non-forest species. The most common species was Anoplolepis gracilipes, an invasive species present at 70% of all bait sites and known to cause ‘ecological meltdowns’ in other situations. The low frequency and species number of forest ground ants indicates that oil palm plantations act as effective dispersal barriers leading to community isolation in rain forest remnants. The replacement of natural forests with oil palm plantations poses a serious threat to the conservation of biodiversity on Borneo if similar results are confirmed in other taxa.     

Camera-trapping assessment of terrestrial mammals and birds in rehabilitated forest in INIKEA Project Area,Sabah, Malaysian Borneo

Landscape and Ecological Engineering - The Innoprise-IKEA (INIKEA) Forest Rehabilitation Project in Kalabakan Forest Reserve, Sabah, was established to rehabilitate degraded forest affected by...     

Functional characterization of MADS box genes involved in the determination of oil palm flower structure

In order to study the molecular regulation of flower development in the monoecious species oil palm (Elaeis guineensis), cDNAs of 12 MADS box genes from this plant belonging to seven distinct subfamilies were previously isolated and characterized. Here studies carried out on five of these genes, each likely to be involved in floral morphogenesis: EgSQUA1 (SQUAMOSA subfamily); EgAGL2-1 (AGL2 subfamily); EgGLO2 (GLOBOSA subfamily); EgDEF1 (DEFICIENS subfamily); and EgAG2 (AGAMOUS subfamily), are described. In order to determine where and when in the plant these genes are likely to function, their spatial and temporal patterns of expression were studied during the development of male and female inflorescences, either of normal phenotype or displaying a homeotic flowering abnormality known as mantled. In parallel, the phenotypic effects of ectopically expressing these genes in transgenic Arabidopsis thaliana plants were analysed. The data suggest a broad conservation of floral homeotic gene functions between oil palm and previously described model species, although a few minor variations in the zones of activity of certain genes cannot be excluded. The data also indicate distinct molecular identities for the morphologically similar floral organs of whorls 1 and 2. They also reveal reduced expression of putative B, C/D, and E class genes in mantled flowers, which undergo a homeotic transformation comparable to B class mutants of model species.     

Changes in forest land use and management in Sabah, Malaysian Borneo, 1990-2010, with a focus on the Danum Valley region

In an earlier special issue of this journal, Marsh & Greer summarized forest land use in Sabah at that time and gave an introduction to the Danum Valley Conservation Area. Since that assessment, during the period 1990-2010, the forests of Sabah and particularly those of the ca 10 000 km(2) concession managed on behalf of the State by Yayasan Sabah (the Sabah Foundation) have been subject to continual, industrial harvesting, including the premature re-logging of extensive tracts of previously only once-logged forest and large-scale conversion of natural forests to agricultural plantations. Over the same period, however, significant areas of previously unprotected pristine forest have been formally gazetted as conservation areas, while much of the forest to the north, the south and the east of the Danum Valley Conservation Area (the Ulu Segama and Malua Forest Reserves) has been given added protection and new forest restoration initiatives have been launched. This paper analyses these forest-management and land-use changes in Sabah during the period 1990-2010, with a focus on the Yayasan Sabah Forest Management Area. Important new conservation and forest restoration and rehabilitation initiatives within its borders are given particular emphasis.     

Carbon stocks and fluxes in tropical lowland dipterocarp rainforests in Sabah, Malaysian Borneo

Deforestation in the tropics is an important source of carbon C release to the atmosphere. To provide a sound scientific base for efforts taken to reduce emissions from deforestation and degradation (REDD+) good estimates of C stocks and fluxes are important. We present components of the C balance for selectively logged lowland tropical dipterocarp rainforest in the Malua Forest Reserve of Sabah, Malaysian Borneo. Total organic C in this area was 167.9 Mg C ha⁻¹±3.8 (SD), including: Total aboveground (TAGC: 55%; 91.9 Mg C ha⁻¹±2.9 SEM) and belowground carbon in trees (TBGC: 10%; 16.5 Mg C ha⁻¹±0.5 SEM), deadwood (8%; 13.2 Mg C ha⁻¹±3.5 SEM) and soil organic matter (SOM: 24%; 39.6 Mg C ha⁻¹±0.9 SEM), understory vegetation (3%; 5.1 Mg C ha⁻¹±1.7 SEM), standing litter (<1%; 0.7 Mg C ha⁻¹±0.1 SEM) and fine root biomass (<1%; 0.9 Mg C ha⁻¹±0.1 SEM). Fluxes included litterfall, a proxy for leaf net primary productivity (4.9 Mg C ha⁻¹ yr⁻¹±0.1 SEM), and soil respiration, a measure for heterotrophic ecosystem respiration (28.6 Mg C ha⁻¹ yr⁻¹±1.2 SEM). The missing estimates necessary to close the C balance are wood net primary productivity and autotrophic respiration.Twenty-two years after logging TAGC stocks were 28% lower compared to unlogged forest (128 Mg C ha⁻¹±13.4 SEM); a combined weighted average mean reduction due to selective logging of −57.8 Mg C ha⁻¹ (with 95% CI −75.5 to −40.2). Based on the findings we conclude that selective logging decreased the dipterocarp stock by 55–66%. Silvicultural treatments may have the potential to accelerate the recovery of dipterocarp C stocks to pre-logging levels.     

Movement trajectories and habitat partitioning of small mammals in logged and unlogged rain forests on Borneo

1. Non-volant animals in tropical rain forests differ in their ability to exploit the habitat above the forest floor and also in their response to habitat variability. It is predicted that specific movement trajectories are determined both by intrinsic factors such as ecological specialization, morphology and body size and by structural features of the surrounding habitat such as undergrowth and availability of supportive structures. 2. We applied spool-and-line tracking in order to describe movement trajectories and habitat segregation of eight species of small mammals from an assemblage of Muridae, Tupaiidae and Sciuridae in the rain forest of Borneo where we followed a total of 13,525 m path. We also analysed specific changes in the movement patterns of the small mammals in relation to habitat stratification between logged and unlogged forests. Variables related to climbing activity of the tracked species as well as the supportive structures of the vegetation and undergrowth density were measured along their tracks. 3. Movement patterns of the small mammals differed significantly between species. Most similarities were found in congeneric species that converged strongly in body size and morphology. All species were affected in their movement patterns by the altered forest structure in logged forests with most differences found in Leopoldamys sabanus. However, the large proportions of short step lengths found in all species for both forest types and similar path tortuosity suggest that the main movement strategies of the small mammals were not influenced by logging but comprised generally a response to the heterogeneous habitat as opposed to random movement strategies predicted for homogeneous environments. 4. Overall shifts in microhabitat use showed no coherent trend among species. Multivariate (principal component) analysis revealed contrasting trends for convergent species, in particular for Maxomys rajah and M. surifer as well as for Tupaia longipes and T. tana, suggesting that each species was uniquely affected in its movement trajectories by a multiple set of environmental and intrinsic features.     

Problems in the harvest of edible birds' nests in Sarawak and Sabah, Malaysian Borneo

Due to the value of their nests, there is great pressure on the populations of black-nest swiftlets (Collocalia maximus) and white-nest swiftlets (Collocalia fuciphagus) in the Malaysian provinces of Sarawak and Sabah. The problems are particularly acute at Gunung Mulu National Park, in spite of a complete ban on collection there, and at Niah National Park, where every participant in a complex collection and trading system has an incentive to take more nests than permitted. More successful harvest systems function in Sabah's Gomantong and Madai Caves. Recommendations for improved management of the nest harvest include addressing corruption, ensuring that local people with traditional rights to collect nests do not lose income to illegal immigrant labor and to traders, improving research and education about the swiftlets' behavior and ecology, and moving value-added processing of the nests closer to the caves where they originate and to the people who collect them.     

Effects of growth regulators on fruit abscission in oil palm, Elaeis guineensis

By delaying harvest of fruit bunches of the oil palm Elaeis guineensis Jacq., an increase in their oil content can be obtained, but this is accompanied by increased harvesting costs and lower oil quality, as the number of detached fruit increases. Treatment of ripening bunches with auxins, gibberellic acid, or ethephon retards fruit abscission, and harvest can be delayed by up to 5 days without increase in the number of detached fruit. Indications are that oil yield might increase by more than 5% during this period, without change in harvesting costs or oil quality.     

Spatial structure and regeneration of Tetramerista glabra in peat swamp rain forest in Indonesian Borneo

We examined the spatial structure and regeneration of Tetramerista glabra, a dominant canopy tree in peat swamp rain forest in Borneo (West Kalimantan, Indonesia). T. glabra has strong spatial structure that changes dramatically during the life cycle; seedlings were highly aggregated, saplings were random and trees were evenly distributed. Germination and seedling relative growth were highest within canopy gaps, but seedling densities were highest at gap edges. Concentration of seedlings in gap edges, rather than localized seed dispersal, was responsible for seedling patchiness. The slope of the relationship between relative growth rate and seedling height decreased from gap, to gap edge to understory habitats, suggesting that competition within the seedling layer is more important in gaps than in the understory. The processes that break down seedling aggregation, leading to over-dispersion of trees, must be density dependent, but remain unknown.     

Spatial structure of litter-dwelling ant distribution in a subtropical dry forest

Understanding the spatial patterns of species distribution is essential to characterize the structure of communities, to optimize species inventories and to evaluate the impact of biotic and abiotic variables. Here we describe the spatial structure of the distribution of leaf litter ant species, and of biotic factors that could explain it, in a subtropical semi-deciduous forest of the Argentinian Chaco, characterized by a dense understorey of shrubs and terrestrial bromeliads. Environmental variables (leaf litter quantity and ground bromeliad density) were measured and ants were collected in 1 m² quadrats distributed along two 200 m transects at intervals of 1.25 m. Overall 87 species were collected. Sixteen positive associations and a single negative association were observed between the 11 most frequent species taken pair-wise. Our results suggest that the spatial distribution of leaf litter ants was determined at two different scales. At a small scale (period below 10 m) a periodic spatial structure, likely due to intraspecific competition, produced a succession of peaks of abundance separated by gaps. At a larger scale (period around 50 m), periodically distributed environmental factors induced aggregates of colonies of species responding positively to these factors. A high quantity of leaf litter and, to a lesser extent, a high density of ground bromeliads promoted a high density and a high species richness of ants. Numerically dominant ants being generally positively associated, interspecific competition was apparently weak. All ant species whose abundance was correlated with an environmental factor were not completely spatially structured by it. This suggests that some other factors, such as intraspecific competition, may have counter-effects. Received 14 March 2005; revised 26 April 2005; accepted 10 May 2005.     

Interspecific relations in forest floor coleopteron assemblages: Niche overlap and guild structure

In six different environments of the Towada-Hachimantai National Park, the forest floor coleopterons were sampled by means of pitfall traps with five different baits. Their niche breadths and niche overlaps were assessed for the electivity of habitat, bait, and habitat × bait, and compared with those expected from neutral models constructed randomly. The niche breadths in the observed assemblages were smaller than those expected from the neutral model, while the niche overlaps were more widely distributed than those expected from the neutral model. Mean overlaps between species neighbors in niche space, cluster analyses, and ordinations of species revealed a guild for habitat, bait and habitat × bait. Lawlor's (1979) gamma matrices concerning the habitat electivity show that the rates of mutualism resulted from indirect interspecific competitions are significantly smaller in the guild than in the whole assemblage. This suggests that the interspecific competition among the guild members is mitigated or even converted into mutualism by joining of the species which do not belong to the guild. The rates of mutualism were also significantly larger in the resource state of two dimensions (habitat × bait) than in that of either one. Therefore, if niche overlaps are measured on the basis of resource state of multi-dimensions, the rates of mutualism may increase further.