Butterfly species and traits associated with selectively logged forest in Borneo

Logging can significantly change the structure of rainforest communities. To better understand how logging drives this change, butterflies and environmental variables were assessed within both unlogged and logged forest in Indonesian Borneo. In the whole dataset, we found local environmental variables and geographic distance combined captured 53.1% of the variation in butterfly community composition; 29.6% was associated with measured local environmental variables, 13.6% with geographic distance between sites, and 9.9% with covariation between geographic distance and environmental variables. The primary axis of variation in butterfly community composition represented a disturbance gradient from unlogged to logged forest. Subsequent axes represented gradients influenced by variables such as canopy cover and total tree density. There were significant associations between environmental variables and geographic range and larval host plant use of species. Specifically, butterflies using trees as larval host plants and those with distributions limited to Borneo were more likely to be present in unlogged forest. By contrast, species that tended to be more abundant in logged forest were those with widespread distributions and those using lianas and grasses as larval host plants. The results of this study highlight the importance of environmental variables and disturbance, e.g., selective logging, in structuring rainforest community diversity. Moreover, they confirm how species traits, such as larval food use and geographic distributions can determine patterns of species abundance following environmental change.     

Population structure and intraspecific aggression in the invasive ant species Anoplolepis gracilipes in Malaysian Borneo

Invasive species are one of the main sources of the ongoing global loss of biodiversity. Invasive ants are known as particularly damaging invaders and their introductions are often accompanied by population-level behavioural and genetic changes that may contribute to their success. Anoplolepis gracilipes is an invasive ant that has just recently received increased attention due to its negative impact on native ecosystems. We examined the behaviour and population structure of A. gracilipes in Sabah, Malaysia. A total of 475 individuals from 24 colonies were genotyped with eight microsatellite markers. Intracolonial relatedness was high, ranging from 0.37 to 1 (mean +/- SD: 0.82 +/- 0.04), while intercolonial relatedness was low (0.0 +/- 0.02, range -0.5-0.76). We compared five distinct sampling regions in Sabah and Brunei. A three-level hierarchical F-analysis revealed high genetic differentiation among colonies within the same region, but low genetic differentiation within colonies or across regions. Overall levels of heterozygosity were unusually high (mean H(O) = 0.95, mean H(E) = 0.71) with two loci being entirely heterozygous, indicating an unusual reproductive system in this species. Bioassays revealed a negative correlation between relatedness and aggression, suggesting kinship as one factor facilitating supercolony formation in this species. Furthermore, we genotyped one individual per nest from Sabah (22 nests), Sarawak (one nest), Brunei (three nests) and the Philippines (two nests) using two mitochondrial DNA markers. We found six haplotypes, two of which included 82.1% of all sequences. Our study shows that the sampled area in Sabah consists of a mosaic of differently interrelated nests in different stages of colony establishment. While some of the sampled colonies may belong to large supercolonies, others are more likely to represent recently introduced or dispersed propagules that are just beginning to expand.     

Ecological impacts of oil palm agriculture on forest mammals in plantation estates and smallholdings

Global oil palm expansion has caused substantial ecological damage to tropical biodiversity. We quantified wild mammal richness in large oil palm plantation estates and semi-traditional oil palm smallholdings in Peninsular Malaysia. We sampled 41 plantation estates and 14 smallholdings, and used line-transect surveys coupled with semi-structured interviews to develop a database of the native mammals found in oil palm landscapes. Semi-structured interviews revealed a total of 32 mammal species, including 13 IUCN Red Listed taxa of high conservation value. Our results showed that human activity and the size of patches of remnant rainforest were important factors influencing the richness of mammal species in oil palm landscapes. More carnivorous and herbivorous species were reported in smallholdings than plantation estates, most probably as a response to greater habitat heterogeneity in smallholdings. All species, irrespective of conservation status, were more likely to be recorded in oil palm plantation estates and smallholdings that supported large areas of native forest. Our findings suggest that biodiversity conservation in oil palm landscapes will require a variety of conservation approaches. Minimizing poaching, reducing disturbance from human activity, and protecting existing forest patches appear particularly important. Strategies to promote the persistence of both high and low conservation value species should be adopted as part of a strengthened certification scheme for oil palm production.     

Exploring arboreal ant community composition and co-occurrence patterns in plantations of oil palm Elaeis guineensis in Borneo and Peninsular Malaysia

The oil palm, Elaeis guineensis , is a native of West Africa and is now extensively grown in south-east Asia. In 2005, the crop covered four million ha of Malaysia. We examined the arboreal ant fauna in two oil palm plantations that had been farmed with integrated pest management practices for at least 10 yr. Having cut and examined palm fronds from 595 and 503 palms in Borneo and Peninsular Malaysia respectively, we studied diversity in ant assemblages, analysed composition of ant mosaics by stepwise use of null-models, and explored the influence of exotic vs native species on community structure. Altogether we sampled 52 species of canopy ants, of which 23 species were shared between Borneo and Peninsular Malaysia. Seventeen species in Borneo and 24 species in Peninsular Malaysia accounted for 95% of all species occurrences (SOCs). Fortysix percent of all SOCs belonged to 12 tramp ant species with pan-tropical distributions. Forty percent of all SOCs were exotic ants. Six dominant species were found in Borneo, five in the Peninsula. The three most abundant species, Anoplolepis gracilipes , Oecophylla smaragdina and Technomyrmex albipes were dominant in both sites. Three dominants were invasive species that were found on more palms than the native group. Dominant tramp species coexisted with non-dominants more often and tolerated more species of non-dominant ants than native dominants. Null model analyses indicated that species were arranged in mosaics at both the Peninsular Malaysia and Borneo sites. Dominant species showed much less co-occurrence than expected by chance, pointing towards species segregation (even in presence of introduced, invasive species). Similar results were obtained for all species. Non-dominant ants were either positively associated with their dominants, or co-occurred randomly in the presence of dominant species. In contrast, ant assemblages on palms without dominants showed species segregation.     

Oil palm expansion increases the vectorial capacity of dengue vectors in Malaysian Borneo

Changes in land-use and the associated shifts in environmental conditions can have large effects on the transmission and emergence of mosquito-borne disease. Mosquito-borne disease are particularly sensitive to these changes because mosquito growth, reproduction, survival and susceptibility to infection are all thermally sensitive traits, and land use change dramatically alters local microclimate. Predicting disease transmission under environmental change is increasingly critical for targeting mosquito-borne disease control and for identifying hotspots of disease emergence. Mechanistic models offer a powerful tool for improving these predictions. However, these approaches are limited by the quality and scale of temperature data and the thermal response curves that underlie predictions. Here, we used fine-scale temperature monitoring and a combination of empirical, laboratory and temperature-dependent estimates to estimate the vectorial capacity of Aedes albopictus mosquitoes across a tropical forest–oil palm plantation conversion gradient in Malaysian Borneo. We found that fine-scale differences in temperature between logged forest and oil palm plantation sites were not sufficient to produce differences in temperature-dependent demographic trait estimates using published thermal performance curves. However, when measured under field conditions a key parameter, adult abundance, differed significantly between land-use types, resulting in estimates of vectorial capacity that were 1.5 times higher in plantations than in forests. The prediction that oil palm plantations would support mosquito populations with higher vectorial capacity was robust to uncertainties in our adult survival estimates. These results provide a mechanistic basis for understanding the effects of forest conversion to agriculture on mosquito-borne disease risk, and a framework for interpreting emergent relationships between land-use and disease transmission. As the burden of Ae. albopictus-vectored diseases, such as dengue virus, increases globally and rising demand for palm oil products drives continued expansion of plantations, these findings have important implications for conservation, land management and public health policy at the global scale.     

Inter-annual dynamics and persistence of small mammal communities in a selectively logged tropical forest in Borneo

Understanding temporal change and long-term persistence of species and communities is vital if we are to accurately assess the relative values of human-modified habitats for biodiversity. Despite a large literature and emerging consensus demonstrating a high conservation value of selectively logged tropical rainforests, few studies have taken a long-term perspective. We resampled small mammals (≤?1 kg) in a heavily logged landscape in Sabah, Borneo between 2011 and 2016 to investigate temporal patterns of species-level changes in population density. We found that small mammal population density in heavily logged forest was highly variable among years, consistent with patterns previously observed in unlogged forest, and uncovered evidence suggesting that one species is potentially declining towards local extinction. Across nine species, population densities varied almost sevenfold during our 6-year study period, highlighting the extremely dynamic nature of small mammal communities in this ecosystem. Strictly terrestrial murid species tended to exhibit strong temporal dynamics, whereas semi-arboreal foraging species such as treeshrews had more stable dynamics. We found no relationships between population density and fruit/seed mass, and therefore no evidence that our patterns represent responses to inter-annual mast fruiting of the dominant canopy dipterocarp trees. This may be due to the removal of most of the canopy during logging, and hence the dipterocarp seed resource, although it possibly also reflects spatiotemporal limitations of our data. Our results underline the importance of understanding long-term variability in animal communities before developing conservation and management recommendations for human-altered ecosystems.     

Effects of oil palm plantations on habitat structure and fish assemblages in Amazon streams

The aim of this research is to assess the effects of oil palm plantations on stream habitat and their fish assemblage diversity. We hypothesize that streams which drain through oil palm plantations tend to be less heterogeneous, limiting the occurrence of many species, than streams that drain through forest fragments, which support higher fish diversity. A total of 17 streams were sampled; eight in forest fragments and nine in oil palm plantations. Environmental and biological variables were sampled along 150 m stretch in each stream. Of the 242 environmental variables measured, ten were considered important to assess the condition of structural habitat, and out of these variables, four were considered relevant in the distinction between streams in oil palm plantations and forest fragments. A total of 7245 fishes were collected, belonging to 63 species. Unlike our original hypothesis, the species richness did not differ between forest fragment and oil palm plantations streams, showing that it is not a good divert measure in streams disturbance assessment. However, fish assemblages differed in species composition, and 56 species were recorded in oil palm plantation streams, while 44 species were recorded in forest fragments streams. Some species were identified as indicators of either altered (Aequidens tetramerus and Apistogramma agassizii) or undisturbed areas (Helogenes marmoratus). Overall, oil palm plantations were proven to change stream habitat structure and fish species distribution, corroborating other studies that have evidenced changes in patterns of biological community structure due to impacts by different land uses.     

Mycorrhizal status of epiphytes in Malaysian oil palm plantations

Epiphytic plants were collected from four oil palm plantations in Peninsular Malaysia and their mycorrhizal status determined. Conspecific plants with a terrestrial habit (16 species) and rhizosphere soils were also examined for mycorrhizal colonization and glomalean fungi, respectively. Twelve species of glomalean fungi were recovered from the four oil palm plantation soils. Of the 29 epiphytic species in 16 families belonging to the bryophytes, pteridophytes and angiosperms, only four species of angiosperms that were facultative epiphytes and a hemiepiphyte growing within 0.4 m of ground level had vesicular-arbuscular mycorrhizal (VAM) fungi. Bioassays of organic debris from oil palm trunks did not produce vesicular-arbuscular mycorrhizas on maize. Six epiphytic species grown in the greenhouse in pots containing oil palm rhizosphere soils rooted and had VAM fungi and thus may be facultative epiphytes. Five other epiphyte species failed to grow in pots and are probably obligate epiphytes. Seven epiphyte species that established themselves in pots failed to form vesicular-arbuscular mycorrhizas.     

Fuelling the biodiversity crisis: species loss of ground-dwelling forest ants in oil palm plantations in Sabah,Malaysia (Borneo)

Oil palm plantations today cover large areas of former tropical lowland rain forest in Southeast Asia and are rapidly expanding on the island of Borneo. Study of the community of ground-dwelling ants in different plantations in Sabah, Malaysia, over 2 years using tuna baiting, revealed that the oil palm plantation ground ant community was severely reduced in species richness in comparison to the forest interior, regardless of age, undergrowth cover, or proximity to neighbouring forest. The results indicate that oil palm plantation habitats, now covering more than 15% of Sabah’s land area, can sustain only about 5% of the ground-dwelling ant species of the forest interior. Nine of the 23 ant species baited in the plantations were never recorded inside forest. All numerically dominant ants were non-forest species. The most common species was Anoplolepis gracilipes, an invasive species present at 70% of all bait sites and known to cause ‘ecological meltdowns’ in other situations. The low frequency and species number of forest ground ants indicates that oil palm plantations act as effective dispersal barriers leading to community isolation in rain forest remnants. The replacement of natural forests with oil palm plantations poses a serious threat to the conservation of biodiversity on Borneo if similar results are confirmed in other taxa.     

Functional and phylogenetic structure of forest and savanna bird assemblages across spatial scales

Ecological and evolutionary mechanisms that drive community assembly vary in space and time. However, little is known about how such mechanisms act in contrasting habitats. Here, we estimated the functional and phylogenetic structure of forest and savanna bird assemblages across different spatial scales to understand: 1) the mechanisms that govern the structure of assemblages in these habitats; 2) the relationship between phylogenetic and functional structure; and 3) the influence of species richness on the functional and phylogenetic structure of assemblages. We used a null model where forest and savanna bird species were allowed to occur in the same null assemblages and other where species were separated based on their habitats. According to the first null model, forest bird assemblages were functionally and phylogenetically clustered at all spatial scales, whereas savanna bird assemblages generally showed random functional and phylogenetic structure. These results can be explained by the low dispersal rate of forest species across of the patchy habitats and the widespread distribution of savanna species. However, in the second null model, both forest and savanna bird assemblages showed random functional and phylogenetic structure at regional and local scales. This suggests that trait‐based assembly might not play an important role in both habitats and across different spatial scales. In addition, the phylogenetic and functional structure of assemblages were not correlated, evidencing that caution is necessary when using phylogenetic relationships as a surrogate to functional distances among species. Finally, the relationships between species richness and functional and phylogenetic structure indicated that an increase in the number of species can promote both clustering and overdispersion, depending on the studied habitat and scale. Our study shows that integrating different types of habitat, spatial scales and biodiversity components in a single framework can shed light on the mechanisms that determine the community assembly.     

Densities of Bornean orang‐utans (Pongo pygmaeus morio) in heavily degraded forest and oil palm plantations in Sabah,Borneo

The conversion of forest to agriculture continues to contribute to the loss and fragmentation of remaining orang‐utan habitat. There are still few published estimates of orang‐utan densities in these heavily modified agricultural areas to inform range‐wide population assessments and conservation strategies. In addition, little is known about what landscape features promote orang‐utan habitat use. Using indirect nest count methods, we implemented surveys and estimated population densities of the Northeast Bornean orang‐utan (Pongo pygmaeus morio) across the continuous logged forest and forest remnants in a recently salvage‐logged area and oil palm plantations in Sabah, Malaysian Borneo. We then assessed the influence of landscape features and forest structural metrics obtained from LiDAR data on estimates of orang‐utan density. Recent salvage logging appeared to have a little short‐term effect on orang‐utan density (2.35 ind/km ²), which remained similar to recovering logged forest nearby (2.32 ind/km ²). Orang‐utans were also present in remnant forest patches in oil palm plantations, but at significantly lower numbers (0.82 ind/km ²) than nearby logged forest and salvage‐logged areas. Densities were strongly influenced by variation in canopy height but were not associated with other potential covariates. Our findings suggest that orang‐utans currently exist, at least in the short‐term, within human‐modified landscapes, providing that remnant forest patches remain. We urge greater recognition of the role that these degraded habitats can have in supporting orang‐utan populations, and that future range‐wide analyses and conservation strategies better incorporate data from human‐modified landscapes.     

Camera-trapping assessment of terrestrial mammals and birds in rehabilitated forest in INIKEA Project Area,Sabah, Malaysian Borneo

Landscape and Ecological Engineering - The Innoprise-IKEA (INIKEA) Forest Rehabilitation Project in Kalabakan Forest Reserve, Sabah, was established to rehabilitate degraded forest affected by...     

Oil palm expansion into rain forest greatly reduces ant biodiversity in canopy,epiphytes and leaf-litter

Oil palm cultivation is expanding rapidly into many of the world's most biodiverse tropical regions. One of the most functionally important and ecologically dominant animal groups in these environments is the ants. Here, we quantify the overall impacts of clear-felling lowland dipterocarp rainforest and conversion into oil palm plantation on ant diversity. At study sites in Sabah, Malaysia we collected ants from three microhabitats: 1 – the canopy, 2 – bird's nest ferns (Asplenium nidus complex, a common epiphyte in forest and oil palm), and 3 – leaf litter. We also measured temperature, humidity and light at collection sites to assess their impacts on ant community composition. Total ant species richness decreased from 309 to 110 (?64%) between forest and oil palm plantation. However, this impact was not the same across all microhabitats, with bird's nest ferns maintaining almost the same number of ant species in oil palm compared to forest (forest-oil palm, ferns: 36–35 (3% loss), canopy: 120–58 (52% loss), leaf litter: 216–56 (74% loss)). Relative abundance distributions remained the same for fern-dwelling ants, but became less even for oil palm ants in both the canopy and the leaf litter. These differences may be due in part to the ability of bird's nest ferns to provide a stable microclimate in hot, dry plantations. We also found that non-native ant species were more abundant in oil palm than in forest, and few forest ant species survived in plantations in any of the microhabitats. Only 59 of the 309 forest species persisted in oil palm plantations, corresponding to an 81% loss of forest species resulting from habitat conversion. Although oil palm supports many more ant species than has been previously reported, converting forest into plantation still leads to a dramatic reduction in species richness. The maintenance of forested areas is therefore vital for the conservation of ant biodiversity.     

Functional characterization of MADS box genes involved in the determination of oil palm flower structure

In order to study the molecular regulation of flower development in the monoecious species oil palm (Elaeis guineensis), cDNAs of 12 MADS box genes from this plant belonging to seven distinct subfamilies were previously isolated and characterized. Here studies carried out on five of these genes, each likely to be involved in floral morphogenesis: EgSQUA1 (SQUAMOSA subfamily); EgAGL2-1 (AGL2 subfamily); EgGLO2 (GLOBOSA subfamily); EgDEF1 (DEFICIENS subfamily); and EgAG2 (AGAMOUS subfamily), are described. In order to determine where and when in the plant these genes are likely to function, their spatial and temporal patterns of expression were studied during the development of male and female inflorescences, either of normal phenotype or displaying a homeotic flowering abnormality known as mantled. In parallel, the phenotypic effects of ectopically expressing these genes in transgenic Arabidopsis thaliana plants were analysed. The data suggest a broad conservation of floral homeotic gene functions between oil palm and previously described model species, although a few minor variations in the zones of activity of certain genes cannot be excluded. The data also indicate distinct molecular identities for the morphologically similar floral organs of whorls 1 and 2. They also reveal reduced expression of putative B, C/D, and E class genes in mantled flowers, which undergo a homeotic transformation comparable to B class mutants of model species.     

An in vitro investigation of Malaysian Phytophthora palmivora isolates and pathogenicity study on oil palm

Bud rot disease affecting oil palm in South American countries is reported to be caused by Phytophthora palmivora. P. palmivora is a local pathogen affecting various crops in Malaysia, and this finding caused an alarm, which prompted an investigation of pathogenicity using Malaysian P. palmivora to assess the potentials of this Oomycete to infect oil palm in Malaysia. A total of 11 P. palmivora isolates were obtained from cocoa and durian for the study. Leaf bioassays via artificial inoculation using 50,000 zoospores/ml and mycelial agar disc showed severe necrotic lesions on the infection spot of oil palm (DxP) spear leaves. Mild infection was observed in oil palm spear leaves of OxG hybrids indicating lower susceptibility against P. palmivora infection. Phylogenetic analysis using internal transcribed spacer (ITS) data revealed that Malaysian isolates were genetically similar to Colombian isolates supported by significant bootstrap values. The leaf bioassay results revealed that Malaysian oil palm materials are susceptible towards local P. palmivora infection. The Colombian P. palmivora isolates causing bud rot incidence may have evolved over a long period of time, undergone sequential genetic shift to become more virulent towards Colombian oil palm planting materials.     

The effect of forest age and habitat structure on the ground‐dwelling ant assemblages of lowland poplar plantations

相似文献   

Changes in forest land use and management in Sabah, Malaysian Borneo, 1990-2010, with a focus on the Danum Valley region

In an earlier special issue of this journal, Marsh & Greer summarized forest land use in Sabah at that time and gave an introduction to the Danum Valley Conservation Area. Since that assessment, during the period 1990-2010, the forests of Sabah and particularly those of the ca 10 000 km(2) concession managed on behalf of the State by Yayasan Sabah (the Sabah Foundation) have been subject to continual, industrial harvesting, including the premature re-logging of extensive tracts of previously only once-logged forest and large-scale conversion of natural forests to agricultural plantations. Over the same period, however, significant areas of previously unprotected pristine forest have been formally gazetted as conservation areas, while much of the forest to the north, the south and the east of the Danum Valley Conservation Area (the Ulu Segama and Malua Forest Reserves) has been given added protection and new forest restoration initiatives have been launched. This paper analyses these forest-management and land-use changes in Sabah during the period 1990-2010, with a focus on the Yayasan Sabah Forest Management Area. Important new conservation and forest restoration and rehabilitation initiatives within its borders are given particular emphasis.