Interspecific and intraspecific mitochondria-induced cytoplasmic transformation in yeasts

Spheroplasts from respiratory-deficient (rho^–) yeastswere transformed into rho⁺ cells by incubation with mitochondriaprepared from respiratory-sufficient (rho+) yeasts in the presenceof polyethylene glycol 4000 and CaCl₂. Spheroplasts of buddingyeast rho^– strains were also transformed into rho⁺ cellsby treatment with mitochondria prepared from heterospecificbudding or fission yeast strains. All the transformed regeneratantsyielded rho⁺ yeast colonies which bore chromosomal genetic characteristicsof the spheroplasts used and cytoplasmic genetic characteristicsof the mitochondria used. These indicate that mitochondrialgenes or mitochondria themselves introduced by the incubationfunctioned normally in the rho^– cells regardless of thespecies difference of the recipient spheroplasts. ¹A preliminary report appeared in ref. 17. (Received October 31, 1978; )     

Evolution of dominance under frequency-dependent intraspecific competition

A population-genetic analysis is performed of a two-locus two-allele model, in which the primary locus has a major effect on a quantitative trait that is under frequency-dependent disruptive selection caused by intraspecific competition for a continuum of resources. The modifier locus determines the degree of dominance at the trait level. We establish the conditions when a modifier allele can invade and when it becomes fixed if sufficiently frequent. In general, these are not equivalent because an unstable internal equilibrium may exist and the condition for successful invasion of the modifier is more restrictive than that for eventual fixation from already high frequency. However, successful invasion implies global fixation, i.e., fixation from any initial condition. Modifiers of large effect can become fixed, and also invade, in a wider parameter range than modifiers of small effect. We also study modifiers with a direct, frequency-independent deleterious fitness effect. We show that they can invade if they induce a sufficiently high level of dominance and if disruptive selection on the ecological trait is strong enough. For deleterious modifiers, successful invasion no longer implies global fixation because they can become stuck at an intermediate frequency due to a stable internal equilibrium. Although the conditions for invasion and for fixation if sufficiently frequent are independent of the linkage relation between the two loci, the rate of spread depends strongly on it. The present study provides further support to the view that evolution of dominance may be an efficient mechanism to remove unfit heterozygotes that are maintained by balancing selection. It also demonstrates that an invasion analysis of mutants of very small effect is insufficient to obtain a full understanding of the evolutionary dynamics under frequency-dependent selection.     

Evolution of reduced dispersal mortality and 'fat-tailed' dispersal kernels in autocorrelated landscapes

Models describing the evolution of dispersal strategies have mostly focused on the evolution of dispersal rates. Taking trees as a model for organisms with undirected, passive dispersal, we have developed an individual-based, spatially explicit simulation tool to investigate the evolution of the dispersal kernel, P(r), and its resulting cumulative seed-density distribution, D(r). Simulations were run on a variety of fractal landscapes differing in the fraction of suitable habitat and the spatial autocorrelation. Starting from a uniform D(r), evolution led to an increase in the fraction of seeds staying in the home cell, a reduction of the dispersal mortality (arrival in unsuitable habitat), and the evolution of 'fat-tailed' D(r) in autocorrelated landscapes and approximately uniform D(r) in random landscapes. The evolutionary process was characterized by long periods of stasis with a few bouts of rapid change in the dispersal rate.     

Evolution of group size in the dolphins and porpoises: interspecific consistency of intraspecific patterns

I investigated group size variability in dolphins and porpoisesusing intraspecific comparisons. Explanatory factors consideredin the analysis were variables of the physical environment,the diet, and the life history of the species. Open habitatand small body size were viewed as increasing predation risk.This pattern was apparent in Risso's dolphins (Grampus griseus) and weakly apparent in bottlenose dolphins (Tursiops spp.).Group size was negatively correlated with body size in pilotwhales (Globicephala spp.) and positively correlated with theopenness of habitat in killer whales (Orcinus orca), stripeddolphins (Stenella coeruleoalba), and common dolphins (Delphinus spp.). No such relationship was found for harbor and Dall'sporpoises (Phocoena phocoena, P. dalli). Group size also seemedto vary depending on other physical measures of the habitat,which may indirectly reflect diet; group size showed U-shapedpatterns if related to temperature. The predictive power ofvariables comprising detailed prey information on group sizewas variable. For example, pilot whales had smaller group sizes when they fed more on mesopelagic fish and less on mesopelagiccephalopods, and common dolphins had larger groups if theyfed on varying types of fish. In most Delphinoidea species,group size could be described by the variables considered inthis study. But each species showed its own pattern of correlationsbetween group size and a specific set of explanatory variables. Thus, no general and consistent relation between group sizeand the other variables was found. It remains unknown whetherthese species-specific patterns result from a historical processor whether they are specialized adaptations.     

Evolution of black yeasts: possible adaptation to the human host

Ascomycetous black yeasts show adaptations to a wide array of environmental conditions. Dothideaceous black yeasts are mostly found on plant leaves, while among herpotrichiellaceous species there are numerous opportunists on humans.Factors which are of ecological significance include the presence of melanin and carotene, formation of thick cell walls and meristematic growth, presence of yeast-like phases, presence of additional forms of conidiogenesis, thermo- and osmotolerance, adhesion, hydrophobicity, production of extracellular polysaccharides, siderophores and acidic or alkaline secondary metabolites.The potential pathogenicity of a species is partly determined by its natural ecological niche. Dothideaceous black yeasts are osmotolerant rather than pathogenic. Herpotrichiellaceous black yeasts probably have low competitive ability and are found in rather special niches as secondary saprophytes, e.g., on bacterial mats, on other fungi or in poor environments. Some species possibly utilize animal vectors for dispersal.     

Evolution of dispersal polymorphism and local adaptation of dispersal distance in spatially structured landscapes

Many organisms show polymorphism in dispersal distance strategies. This variation is particularly ecological relevant if it encompasses a functional separation of short‐ (SDD) and long‐distance dispersal (LDD). It remains, however, an open question whether both parts of the dispersal kernel are similarly affected by landscape related selection pressures. We implemented an individual‐based model to analyze the evolution of dispersal traits in fractal landscapes that vary in the proportion of habitat and its spatial configuration. Individuals are parthenogenetic with dispersal distance determined by two alleles on each individual's genome: one allele coding for the probability of global dispersal and one allele coding for the variance σ of a Gaussian local dispersal with mean value zero. Simulations show that mean distances of local dispersal and the probability of global dispersal, increase with increasing habitat availability, but that changes in the habitat's spatial autocorrelation impose opposing selective pressure: local dispersal distances decrease and global dispersal probabilities increase with decreasing spatial autocorrelation of the available habitat. Local adaptation of local dispersal distance emerges in landscapes with less than 70% of clumped habitat. These results demonstrate that long and short distance dispersal evolve separately according to different properties of the landscape. The landscape structure may consequently largely affect the evolution of dispersal distance strategies and the level of dispersal polymorphism.     

Evolution by small steps and rugged landscapes in the RNA virus phi6

Fisher's geometric model of adaptive evolution argues that adaptive evolution should generally result from the substitution of many mutations of small effect because advantageous mutations of small effect should be more common than those of large effect. However, evidence for both evolution by small steps and for Fisher's model has been mixed. Here we report supporting results from a new experimental test of the model. We subjected the bacteriophage phi6 to intensified genetic drift in small populations and caused viral fitness to decline through the accumulation of a deleterious mutation. We then propagated the mutated virus at a range of larger population sizes and allowed fitness to recover by natural selection. Although fitness declined in one large step, it was usually recovered in smaller steps. More importantly, step size during recovery was smaller with decreasing size of the recovery population. These results confirm Fisher's main prediction that advantageous mutations of small effect should be more common. We also show that the advantageous mutations of small effect are compensatory mutations whose advantage is conditional (epistatic) on the presence of the deleterious mutation, in which case the adaptive landscape of phi6 is likely to be very rugged.     

From genetics of intraspecific differences to genetics of intraspecific similarity

Based on the Mendelian approach to heredity, modern genetics describes inheritance of characters belonging to the category of intraspecific difference. The other large category of characters, intraspecific similarity, stays out of investigation. In this review, the genome part responsible for intraspecific similarity is considered as invariant and regulatory. An approach to studying the invariant part of the Drosophila melanogaster genome is formulated and the results of examining this genome part are presented. The expression of mutations at genes in the invariant genome part is different from that of Mendelian genes. We conclude that these genes are present in the genome in multiple copies and they are functionally haploid in the diploid genome. Severe abnormalities of development appearing in the progeny of mutant parents suggest that the mutant genes are genes regulating ontogeny. A hypothesis on an elementary ontogenetic event is advanced and the general scheme of ontogeny is presented. A concept on two types of gene allelism (cis- and trans-allelism) is formulated. This approach opens a possibility for studying genetic material responsible for the formation of intraspecific similarity characters at different taxonomic levels on the basis of crossing individuals of the same species.     

Evolution and intraspecific exploitative competition. II. A two-locus model for additive gene effects

A two-locus model corresponding to the model of Christiansen and Loeschcke (1980, theoret, Popul. Biol. 18, 297-313) is analysed. The two loci each have two alleles, and the loci influences a character which determines the utilization of resources in a one-dimensional continuum. The analysis of the model is supported by numerical iterations of the recurrence equations. The previous prediction of high linkage disequilibrium for small allele contributions to the character and close linkage between the loci is confirmed. For larger allele contributions results comparable to those for the symmetric viabilities model are obtained. The model degenerates when the allele contributions at the two loci are equal, i.e., in the most symmetric situation. The results are discussed as the outcome of a balance between optimizing selection and disruptive selection. For small allele contributions the results are virtually independent of which genotype is most favoured by the optimizing aspect of the selective forces.     

Evolution of the 12-spanner drug:H+ antiporter DHA1 family in hemiascomycetous yeasts

Frequently, although not exclusively, multidrug resistance (MDR) results from the action of drug-efflux pumps, which are thought to be able to catalyze the active expulsion of several unrelated cytotoxic compounds out of the cell or their intracellular partitioning. The transporters of the major facilitator superfamily (MFS) presumably involved in MDR belong to the 12-spanner drug:H(+) antiporter DHA1 or to the 14- spanner drug:H(+) antiporter DHA2 families. The expression of most Saccharomyces cerevisiae DHA1 family members was found to confer broad chemoprotection. The evolution of the hemiascomycetous DHA1 proteins, belonging to the Génolevures GL3C007 family, was studied using a combined phylogenetic and gene neighborhood approach. The phylogenetic analysis of 189 DHA1 proteins belonging to the genome of 13 hemiascomycetous species identified 20 clusters. Eleven clusters contained no S. cerevisiae members. The phylogenetic clusters were analyzed by the IONS method developed for Identification of Orthologues by Neighborhood and Similarity. This allowed reconstructing the evolutionary history of most DHA1 members within 10 main gene lineages, spanning the whole hemiascomycetes clade, encompassing an evolutionary history of about 350 million years. In addition, five other more species specific lineages, spanning only two hemiascomycetous species, were identified. It is concluded that 57 out of the 143 members of the DHA1 hemiascomycetous members originated from gene duplication events. In half of these duplicates, the two members belong to different phylogenetic clusters, indicating that at least one of them has sufficiently differentiated to provide potential novel functions to this complex family from which most physiological substrates remain unknown.     

Apoptosis in yeasts

Although yeasts lack some elements of the complex apoptotic machinery of metazoan cells, recent studies show that many features of apoptosis, including a caspase-like activity, can be induced in these organisms by DNA damage and other apoptotic triggers. These remarkable findings provide a compelling argument for increased efforts to bring the powerful genetic approaches available to yeast researchers more directly to bear on questions related to apoptosis and its induction or inhibition by drugs. Yeasts may provide a particularly useful model for understanding connections between DNA damage, cell cycle regulation and apoptosis. Here we summarize these recent findings and explore their implications, particularly for the development of more effective therapeutic strategies for treating cancer.     

Phenoptosis in yeasts

The current view on phenoptosis and apoptosis as genetic programs aimed at eliminating potentially dangerous organisms and cells, respectively, is given. Special emphasis is placed on apoptosis (phenoptosis) in yeasts: intracellular defects and a plethora of external stimuli inducing apoptosis in yeasts; distinctive morphological and biochemical hallmarks accompanying apoptosis in yeasts; pro- and antiapoptotic factors involved in yeast apoptosis signaling; consecutive stages of apoptosis from external stimulus to the cell death; a prominent role of mitochondria and other organelles in yeast apoptosis; possible pathways for release of apoptotic factors from the intermembrane mitochondrial space into the cytosol are described. Using some concrete examples, the obvious physiological importance and expediency of altruistic death of yeast cells is shown. Poorly known aspects of yeast apoptosis and prospects for yeast apoptosis study are defined.     

Autolysis in yeasts

The term “autolysis” was introduced into biological literature by SALKOVSKY [1]. Ever since it began to be used to designate self-digestion of cells under the action of their own intracellular enzymes. This definition is sufficiently satisfactory with regard to bacteria, and there are published lots of original and review papers dealing specifically with bacteria. Considerably less material has been accumulated on eukaryotes, apparently due to the absence of the fact of the cell self-digestion in most yeasts.