Contrasting energy pathways at the community level as a consequence of regime shifts

Ecological regime shifts typically result in abrupt changes in ecosystem structure through several trophic levels, which leads to rapid ecosystem reconfiguration between regimes. An interesting aspect of the impact of regime shift is that alternative regimes may induce distinct shifts in energy pathways; these have been less tested than structural changes. This paper addresses this by using stable isotopes to establish the energy pathways in fish communities. We specifically focus on the impact of regime shift on changes of the energy pathways, and how the magnitude and direction of these changes affect the local community. We found that energy pathways significantly varied among the planktivorous, benthivorous, and piscivorous trophic guilds as a result of the alternative regimes. The regime shift from a clear to a turbid state altered the food web towards planktonic energy pathways and truncated food chain length, which is indicative of less ecological efficiency. This was confirmed by the adaptive foraging strategies of prevalent omnivores in the current communities. These structural and functional characteristics of trophic interactions might not facilitate classic trophic cascading effects in such a turbid regime and suppress the system’s response to environmental changes, e.g., nutrient loading, and restoration efforts in turbid to clear water regime shifts.     

Algal stromatolites from the Late Precambrian of Sweden

Stromatolitic structures from the Late Precambrian Visingö Beds are described. The mode of development of these sedimentary-biogenic structures and the problems related to their characterization in a system of formulas are discussed. The study of the stromatolitic structures and their associated sediments proved that the stromatolitic structures LLH (vertically arranged, lateral-linked hemispher-oids) and SH (discrete, vertically stacked hemispheroids) could develop together on the same stromatolite dome, depending on different degrees of exposure to the action of water currents in an intertidal environment. Superimposed LLH and SH structures in the Visingsö Beds may indicate periodical changes in current activity depending on repeated periodic events such as tidal and/or storm waves.     

Changes in the lower trophic levels as a consequence of the level of fish manipulation in the ponds

Cyprinid fish of different mature age classes (3+ -4+) and stocks (100, 300 and 500 kg/ha) were introduced into each of three experimental ponds with area of 0.3 ha (average depth ca 1.7 m) while the fourth pond was left free of fish. Bream (Abramis brama L.), white bream (Blicca bjoerkna L.) and roach (Rutilus rutilus L.) made up 75% of the total cyprinid biomass, with wild carp (Cyprinus carpio L.) as the remaining 25%. The introduced fish spawned successfully. The high (above 300 kg/ha) planktivorous and benthivorous fish stocks resulted in several qualitative and quantitative alterations of the food chain structure in our simulation pond experiments. These alterations must primarily be assigned to changes caused by both the zooplanktivory and benthivory nature of the stocked fish populations. At the higher levels of fish biomass, Secchi depth was influenced significantly by chlorophyll-a concentration. Most of the variance in suspended solids concentration could be explained by the biomass ratio of the mature benthivorous fish. There was a clear shift in algal cell size in the ponds with the higher fish stocks: ponds with more fish had larger cells later in the summer. The relative influence of young cyprinid fish on crustaceans species composition and biomass, and mature populations on benthic fauna abundance and biomass, was sufficiently greater at higher (300–500 kg/ha) fish stock rates.     

Formation of endonuclease III-sensitive sites as a consequence of oxygen radical attack on DNA

Exposure of the plasmid pBR 322 to the aerobic xanthine oxidase reaction introduced single strand scissions and endonuclease III-sensitive sites. The latter may be residues of thymine glycol. Both forms of DNA damage were completely prevented by superoxide dismutase or catalase, whereas bovine serum albumin was much less effective. Mannitol and benzoate, added as scavengers of HO., and desferrioxamine or diethylene triamine pentaacetate, added to sequester Fe(III), also protected. These results indicate a metal-catalyzed interaction of O2- with H2O2, which produces HO. which, in turn, causes DNA strand scission and oxidation of thymine residues to thymine glycol. Plasmid isolated from aerobically-incubated cells contained more strand scissions and endonuclease III-sensitive sites than did plasmid from anaerobically-incubated cells, and a low molecular weight scavenger of O2- prevented the damage seen with the aerobic cells. Genetic defects in AP endonucleases rendered E. coli more susceptible to the dioxygen-dependent lethality of plumbagin, which mediates O2- production. Similarly, plasmid DNA, within the endonuclease-deficient cells, exhibited more strand scissions and endonuclease III-sensitive sites upon aerobic exposure to plumbagin than did endonuclease-sufficient cells, and a low molecular weight scavenger of O2- was protective. These results are consistent with the conclusions that strand scissions and formation of endonuclease III-sensitive sites are among the consequences of exposure of DNA to O2- plus H2O2, both in vitro and in vivo.     

Amino acids from the Late Precambrian Thule Group,Greenland

Amino acids were recovered at a concentration level of 10^–9 M/g from the interior of chert and dolomite of the Late Precambrian Thule Group. Examination of the stability of amino acids in chert under dry-heating conditions suggests that these amino acids have been preserved with a predominance of L-enantiomers in the Precambrian chert. Enantiomer analysis of amino acids in dolomite showed a thermal effect resulting from a late Precambrian igneous intrusion. This evidence indicates that the amino acids isolated from the Thule samples were chemical fossils and not recent contaminants.     

Modeling of swarm formation as a consequence of autotaxis

The simple model of school and swarm formation is proposed within the frameworks of Eulerian space models (reaction-diffusion-advection system). Assuming that the schooling and the processes of birth-and-death act on different time scales, we have excluded the local kinetics of species (the reaction term) from the model. The spatial dynamics of animals is circumscribed by scalar field of density and vector field of velocity. The basis of animal aggregation in space is the ability of animals to move in certain direction, i.e. taxis. As an example of swarming strategy the behavior of midges is taken: we presume that individuals accelerate towards higher swarm density but change direction when the density exceeded some maximum. In other words, acceleration of movement is assumed to be proportional (with density-dependent coefficient of proportionality) to the gradient of species density. This statement poses the equation for species velocity. Thus, our model adds the differential equation for velocity of autotaxis to the standard advection-diffusion model. The linear analysis of 1D problem with zero-flux boundary conditions has showed that homogeneous nonzero equilibrium looses its stability when the movement rate of animals (coefficient of proportionality in velocity equation) overpasses some bifurcation value. The numerical experiments have confirmed analytical results, displaying stationary spatially heterogeneous solution (standing waves) for the detected supercritical value of the movement rate.     

Intramolecular rearrangements as a consequence of the dephosphorylation of phosphoaspartate residues in proteins

Sedlin is an evolutionarily conserved protein encoded by the causative gene SEDL for spondyloepiphyseal dysplasia tarda. Nevertheless, how Sedlin mutations cause the disease remains unknown. Here, the intracellular chloride channel protein CLIC1 was shown to associate with Sedlin by yeast two-hybrid screening. Green fluorescence protein-CLIC1 readily co-immunoprecipitated with FLAG-Sedlin. In addition, both proteins colocalized extensively in cytoplasmic vesicular/reticular structures in COS-7 cells, suggesting their interaction at intracellular membranous organelles. Sedlin also associated with CLIC2 in yeast two-hybrid assays. The link between Sedlin and the intracellular chloride channels is the first step to understand their functional interplays.     

Robust development as a consequence of generated positional information

The origin and robustness of morphogenesis are studied by dynamical system modeling of a cell society, in which cells possessing internal chemical reaction dynamics interact with each other through their mutual interaction with diffusive chemicals in a two-dimensional medium. It is found that stem-type cells differentiate into various cell types (where a cell 'type' is defined by a type of intra-cellular dynamics) due to a dynamic instability caused by cell-cell interactions in a manner described by the isologous diversification theory. The differentiations are spatially regulated by the concentration of chemicals in the medium, while the chemical concentrations are locally influenced by the intra-cell dynamics. Through this reciprocal relationship, chemical concentrations come to exhibit spatial variation as differentiated cell types begin to emerge, and as a result the regulation exercised by the chemical concentrations become spatially inhomogeneous. This reinforces the process of differentiation, through which spatial patterns of differentiated cells appear. Within this reciprocal relationship, the concentration gradients are read and interpreted by the cell as positional information. A spatial order of cells realized in this process represents a stable state of the system governed by this reciprocal relationship, and that the developmental process through which this state is realized is robust with respect to perturbations. The dependence of the morphogenesis on history and the community effect in cell differentiation are also discussed.     

Non-random-coil behavior as a consequence of extensive PPII structure in the denatured state

Unfolded proteins may contain a native or nonnative residual structure, which has important implications for the thermodynamics and kinetics of folding, as well as for misfolding and aggregation diseases. However, it has been universally accepted that residual structure should not affect the global size scaling of the denatured chain, which obeys the statistics of random coil polymers. Here we use a single-molecule optical technique—fluorescence correlation spectroscopy—to probe the denatured state of a set of repeat proteins containing an increasing number of identical domains, from 2 to 20. The availability of this set allows us to obtain the scaling law for the unfolded state of these proteins, which turns out to be unusually compact, strongly deviating from random coil statistics. The origin of this unexpected behavior is traced to the presence of an extensive nonnative polyproline II helical structure, which we localize to specific segments of the polypeptide chain. We show that the experimentally observed effects of polyproline II on the size scaling of the denatured state can be well-described by simple polymer models. Our findings suggest a hitherto unforeseen potential of nonnative structure to induce significant compaction of denatured proteins, significantly affecting folding pathways and kinetics.     

Extralymphatic virus sanctuaries as a consequence of potent T-cell activation

T helper cells can support the functions of CD8(+) T cells against persistently infecting viruses such as murine lymphocytic choriomeningitis virus (LCMV), cytomegalovirus, hepatitis C virus and HIV. These viruses often resist complete elimination and remain detectable at sanctuary sites, such as the kidneys and other extralymphatic organs. The mechanisms underlying this persistence are not well understood. Here we show that mice with potent virus-specific T-cell responses have reduced levels and delayed formation of neutralizing antibodies, and these mice fail to clear LCMV from extralymphatic epithelia. Transfer of virus-specific B cells but not virus-specific T cells augmented virus clearance from persistent sites. Virus elimination from the kidneys was associated with the formation of IgG deposits in the interstitial space, presumably from kidney-infiltrating B cells. CD8(+) T cells in the kidneys of mice that did not clear virus from this site were activated but showed evidence of exhaustion. Thus, we conclude that in this model of infection, site-specific virus persistence develops as a consequence of potent immune activation coupled with reductions in virus-specific neutralizing antibodies. Our results suggest that sanctuary-site formation depends both on organ anatomy and on the induction of different adaptive immune effector mechanisms. Boosting T-cell responses alone may not reduce virus persistence.     

Vitamin C stabilization as a consequence of the plasma membrane redox system

Summary Ascorbate is stabilized in the presence of HL-60 cells. Our results showed that cAMP derivatives and agents that increase cAMP stimulate the ability of HL-60 cells to stabilize ascorbate. On the other hand, tunicamycin, a glycosilation-interfering agent, inhibited this ability. The ascorbate stabilization in the presence of HL-60 cells has been questioned as a simple chemical effect. Further properties and controls about the enzymatic nature of this stabilization are described and discussed. This data, together with hormonal regulation, support the hypothesis that an enzymatic redox system located at the plasma membrane is responsible of the extracellular ascorbate stabilization by HL-60 cells.Abbreviations AFR ascorbate free radicals - FCS fetal calf serum - Sp-cAMPS Sp-cyclic adenosine monophosphothionate - Rp-cAMPS Rp-cyclic adenosine monophosphothionate     

Psychiatric disturbance as a consequence of abnormal periodic cardiac variation

Abstract

The relationship between cardiac rate variation, resting sinus rhythm heart rate in beats per minute, and mental state is reviewed. A small series of 12 psychiatric patients in whom these variables were studied both before and after appropriate psychiatric treatment is reported. Comparison with the periodicity of cardiac rate variation in a normal group of subjects showed that the setting of the biological clock governing cardiac rate variation in psychiatric patients is abnormal, and in these cases running at a slower frequency than that of mental health. Appropriate psychiatric therapy re‐sets this clock in patients responding to treatment, but fails to do so in those patients who remain unimproved. Resting mean sinus rhythm heart rate in beats per minute does not show this relationship.