Gene mining in halophytes: functional identification of stress tolerance genes in Lepidium crassifolium

Extremophile plants are valuable sources of genes conferring tolerance traits, which can be explored to improve stress tolerance of crops. Lepidium crassifolium is a halophytic relative of the model plant Arabidopsis thaliana, and displays tolerance to salt, osmotic and oxidative stresses. We have employed the modified Conditional cDNA Overexpression System to transfer a cDNA library from L. crassifolium to the glycophyte A. thaliana. By screening for salt, osmotic and oxidative stress tolerance through in vitro growth assays and non‐destructive chlorophyll fluorescence imaging, 20 Arabidopsis lines were identified with superior performance under restrictive conditions. Several cDNA inserts were cloned and confirmed to be responsible for the enhanced tolerance by analysing independent transgenic lines. Examples include full‐length cDNAs encoding proteins with high homologies to GDSL‐lipase/esterase or acyl CoA‐binding protein or proteins without known function, which could confer tolerance to one or several stress conditions. Our results confirm that random gene transfer from stress tolerant to sensitive plant species is a valuable tool to discover novel genes with potential for biotechnological applications.     

拟南芥ACOL8基因在乙烯合成与响应中的功能分析

植物激素乙烯在多种生理生化过程中发挥重要作用,但其在特定组织器官中的合成机制尚不完全清楚。拟南芥中存在12个功能未知的ACC氧化酶类似蛋白（ACO-like homolog,ACOL）,运用基因定点编辑技术构建了ACOL8的功能丧失型突变体,发现该基因的突变削弱了经典的乙烯“三重反应”。与野生型相比,突变体黄化幼苗下胚轴及主根的长度显著增加,这与突变体对外源ACC的敏感性下降现象一致。同时还发现ACOL8基因的表达受乙烯信号的正反馈调控,EIN3过表达增强其表达水平,而etr1-3的突变则产生相反效应。再者,在正常条件下,ACOL8基因的突变并未影响拟南芥的生长;但在盐胁迫条件下,突变体的根冠比显著下降,这说明该基因参与植物的盐胁迫响应。综上,这些结果说明ACOL8可能具有ACC氧化酶的功能,参与乙烯的合成与响应。     

盐芥(Arabidopsis salsuginea)cDNA文库的随机测序

实验以盐生植物盐芥为材料 ,提取经盐处理的盐芥总RNA ,分离mRNA后 ,构建cDNA文库。从cDNA文库中随机挑取克隆进行测序。结果共测得 5 3个表达序列标记 (EST) ,有 37个EST( 6 9 8% )与拟南芥的基因在多肽水平上有较高同源性 ;2 1个EST( 39.6 % )的功能未知     

The effects of a stimulating intron on the expression of heterologous genes in Arabidopsis thaliana

Introns are often added to transgenes to increase expression, although the mechanism through which introns stimulate gene expression in plants and other eukaryotes remains mysterious. While introns vary in their effect on expression, it is unknown whether different genes respond similarly to the same stimulatory intron. Furthermore, the degree to which gene regulation is preserved when expression is increased by an intron has not been thoroughly investigated. To test the effects of the same intron on the expression of a range of genes, GUS translational fusions were constructed using the promoters of eight Arabidopsis genes whose expression was reported to be constitutive (GAE1, CNGC2 and ROP10), tissue specific (ADL1A, YAB3 and AtAMT2) or regulated by light (ULI3 and MSBP1). For each gene, a fusion containing the first intron from the UBQ10 gene was compared to fusions containing the gene's endogenous first intron (if the gene has one) or no intron. In every case, the UBQ10 intron increased expression relative to the intronless control, although the magnitude of the change and the level of expression varied. The UBQ10 intron also changed the expression patterns of the CNGC2 and YAB3 fusions to include strong activity in roots, indicating that tissue specificity was disrupted by this intron. In contrast, the regulation of the ULI3 and MSBP1 genes by light was preserved when their expression was stimulated by the intron. These findings have important implications for biotechnology applications in which a high level of transgene expression in only certain tissues is desired.     

SOD活性增高的拟南芥晚花突变体具有增强的非生物胁迫耐受性

为了研究晚花突变表型和非生物胁迫耐受性之间是否存在相关性,以遗传背景同为Wassilewskija(Ws-2)的7个拟南芥(Arabidopsis thaliana L.)晚花突变体(CS2235、CS2238、CS2239、CS2240、CS2246、CS2248和CS6208)为材料,通过干旱胁迫、盐胁迫和氧化胁迫实验,发现晚花突变体的耐旱、耐盐和耐氧化性都较野生型(wildtype,WT)强。对叶片失水速率和超氧化物歧化酶(superoxide dismutase,SOD)活性测定结果也表明,晚花突变体的保水能力和SOD活性均高于野生型。相关性回归分析表明SOD活性与耐氧化性、耐旱性、耐盐性之间呈正相关,耐旱性和耐盐性随耐氧化性增强而增强。实验结果表明,这些晚花突变体的表型和非生物胁迫耐受性之间存在相关性。     

An Autophosphorylation Site of the Protein Kinase SOS2 Is Important for Salt Tolerance in Arabidopsis

The protein kinase SOS2 （Salt Overly Sensitive 2） is essential for salt-stress signaling and tolerance in Arabidopsis. SOS2 is known to be activated by calcium-SOS3 and by phosphorylation at its activation loop. SOS2 is autophosphorylated in vitro, but the autophosphorylation site and its role in salt tolerance are not known. In this study, we identified an autophosphorylation site in SOS2 and analyzed its role in the responses of Arabidopsis to salt stress. Mass spectrometry analysis showed that Ser 228 of SOS2 is autophosphorylated. When this site was mutated to Ala, the autophosphorylation rate of SOS2 decreased. The substrate phosphorylation by the mutated SOS2 was also less than that by the wild-type SOS2. In contrast, changing Ser228 to Asp to mimic the autophosphorylation enhanced substrate phosphorylation by SOS2. Complementation tests in a sos2 mutant showed that the S228A but not the $228D mutation partially disrupted the function of SOS2 in salt tolerance. We also show that activation loop phosphorylation at Thr168 and autophosphorylation at Ser228 cannot substitute for each other, suggesting that both are required for salt tolerance. Our results indicate that Ser 228 of SOS2 is autophosphorylated and that this autophosphorylation is important for SOS2 function under salt stress.     

螺旋藻耐盐相关基因启动子区功能分析

文章利用绿色荧光蛋白基因作为报告基因,研究2个螺旋藻耐盐相关基因启动子区域的功能。通过启动子预测软件预测螺旋藻耐盐相关基因5′端非翻译区的启动子结构,用Primer3.0程序在线设计引物,以pMD18-T载体和pUC18载体克隆螺旋藻启动子序列、gfp和卡那霉素抗性基因,将螺旋藻启动子-GFP基因-卡那霉素抗性基因(pro-gfp-kanr)三联DNA片段克隆至pKW1188载体,并将该重组质粒pKW1188::pro::gfp::kanr转化至受体菌集胞藻6803,激光共聚焦显微镜观察不同盐浓度培养条件下、不同时间段集胞藻表达GFP的情况。结果显示,通过不同盐浓度和不同时间的诱导,2个螺旋藻启动子在0.4~0.6 mol/L NaCl条件下,培养6~8 h表达的绿色荧光蛋白最多。文章成功构建了以绿色荧光蛋白为报告基因、卡那霉素抗性基因为选择标记、集胞藻6803作为外源基因表达受体,进行螺旋藻耐盐相关基因功能研究的平台;另外,从螺旋藻启动子能被盐诱导大量表达GFP的结果看,与启动子相关的螺旋藻基因很可能与螺旋藻的耐盐性相关。     

盐胁迫条件下提高内源乙烯对拟南芥幼苗生长和根尖活性氧水平的影响

以模式植物拟南芥（Arabidopsis thaliana）为材料,研究了内源乙烯对幼苗耐盐性的影响。研究结果表明,在施加了浓度为100 mmol·L^-1的NaCl胁迫的基质环境中,野生型拟南芥幼苗的根长和根重都显著减小。在施加外源乙烯利后不仅能够缓解盐胁迫对幼苗根伸长生长的抑制作用,而且能够缓解盐胁迫对幼苗根增重生长的抑制作用。施加外源ACC则只能缓解盐胁迫对幼苗根增重生长的抑制作用,而不能缓解盐胁迫对根的伸长生长的抑制。此外,100 mmol·L^-1 NaCl的胁迫条件下,拟南芥幼苗根尖中ROS水平明显升高,而施加了乙烯利和ACC处理下,幼苗根尖ROS的水平在NaCl胁迫下并没有明显的升高,说明内源乙烯可以调控植物体内的ROS维持在正常的水平,使植物体免受氧化损伤,从而提高了幼苗耐盐性。     

Identification of the GAPDH gene family in Citrullus lanatus and functional characteristics of ClGAPC2 in Arabidopsis thaliana

• Members of the GAPDH family play important roles in plant growth and development, as well as in stress responses. Our aim was to identify stress resistance genes through systematic analysis of the GAPDH family in watermelon. This could not only provide genetic resources for stress resistance breeding, but also form a basis for the study of plant stress resistance mechanisms.
• Eight GAPDHs representing four types of plant GAPDH in watermelon were identified (ClGAPA/B, ClGAPC1-3, ClGAPCp1-2 and ClGAPN). A comprehensive analysis of physicochemical properties, chromosome distribution, evolutionary relationships, exon-intron structure and conserved motifs of watermelon GAPDHs was performed using bioinformatics. Expression characteristics were assessed by RT-qPCR. Based on RT-qPCR results, ClGAPC2 was screened as a candidate for subcellular localization analysis and functional verification in Arabidopsis thaliana.
• Eight GAPDHs were classified into four subfamilies. GAPDHs in each subgroup were generally conserved and shared similarities in structure and conserved motifs. ClGAPDHs had notable tissue specificity and different expression patterns in response to H₂O₂, chilling, salt, osmotic stress, heat, salicylic acid, gibberellin, brassinosterol, ethylene and abscisic acid treatments. Three ClGAPC genes, especially ClGAPC2, were markedly induced by several treatments. ClGAPC2 was located in the nucleus and cytoplasm of tabacum epidermal cells. The ClGAPC2 transgenic Arabidopsis showed enhanced tolerance to salinity at the germination stage.
• We suggest that ClGAPC2 plays important roles in the adaptation of watermelon to salinity. Our findings provided candidate genes for further improving the salt tolerance of watermelon.

     

Functional divergence in the Arabidopsis LOB-domain gene family

The Arabidopsis LOB-domain (LBD) gene family is composed by 43 members divided in two classes based on amino acid conservation within the LOB-domain. The LOB domain is known to be responsible for DNA binding and protein-protein interactions. There is very little functional information available for most genes in the LBD family and many lbd single mutants do not exhibit conspicuous phenotypes. One plausible explanation for the limited loss-of-function phenotypes observed in this family is that LBD genes exhibit significant functional redundancy. Here we discuss an example of one phylogenetic subgroup of the LBD family, in which genes that are closely related based on phylogeny exhibit distinctly different expression patterns and do not have overlapping functions. We discuss the challenges of using phylogenetic analyses to predict redundancy in gene families.     

cDNA(EST)文库的高通量生物信息学分析体系的构建与应用

应用生物信息学方法,构建了一套针对cDNA或EST文库的高通量、自动化分析体系,CLASP(cDNA Library Analysis SystemPrimary)。CLASP基于Linux操作系统,主要由Perl程序构成。它以cDNA文库(ESTs)序列为分析对象,具有自动查找序列同源基因并进行染色体定位(包括细胞遗传学定位和SIS定位)、EST自动延伸等功能;并对不同来源序列进行聚类分析。应用该体系对3对肺癌相关抑制性消减杂交(SSH)cDNA文库进行了分析。结果在所有3对文库的2083条EST中有1492条找到了同源基因,其中1365条得到染色体定位。对所余591条未知基因的EST进行了电子延伸,其中有214条EST得到不同程度的延伸。对上述cDNA文库中已知基因的EST以及电子延伸后的EST再分别进行聚类分析,而后综合两个聚类分析的结果,由此可发现不同文库间的共同与差异表达基因,可用于特定性状相关的基因功能预测。     

拟南芥LEC同源基因的生物信息学分析

用生物信息学方法对拟南芥叶状子叶(LEC)基因的核苷酸序列以及推导氨基酸序列的组成、功能结构域、亲水性等进行了分析。结果表明,拟南芥的LEC蛋白为位于细胞核中的亲水性不稳定蛋白;通过对LEC蛋白的功能结构域的分析发现,LEC1和L1L蛋白中高度保守的区域即为CBF-NFYB-HMF结构域,LEC2和FUSCA3蛋白中高度保守的区域为B3结构域。     

拟南芥AtUNE12基因的耐盐功能初探

bHLH转录因子家族成员在植物生长发育、生理代谢及非生物胁迫响应过程中起重要作用。本研究选取拟南芥抗逆相关bHLH转录因子家族中AtUNE12基因为研究对象,对其进行耐盐功能初探。首先构建AtUNE12基因的植物过表达载体（pROKⅡ-AtUNE12）,通过农杆菌介导的浸花法转化拟南芥,利用qRT-PCR技术检测获得T₃代AtUNE12过表达转基因植株。在盐胁迫下,分析过表达AtUNE12与野生型拟南芥长势、根长及鲜重;比较过表达AtUNE12与野生型植株的电解质渗透率、失水率、MDA含量、POD与SOD活性及H₂O₂含量,鉴定AtUNE12基因是否具有耐盐能力。结果表明：过表达AtUNE12基因降低了拟南芥植株的失水率、电解质渗透率及MDA含量,保护细胞膜结构的完整性;增强了POD与SOD活性,降低了拟南芥植株内的H₂O₂含量,进而增强拟南芥植株的ROS清除能力,从而提高拟南芥的耐盐能力。