Free-living endohelminth stages: at the mercy of environmental conditions

During their free-living phases, endohelminths are directly exposed to environmental conditions in their respective macrohabitats. Both natural environmental factors and pollutants released into the environment through anthropogenic activities can influence the success of the free-living stages. This overview examines the effects of natural variables and pollutants on two specific properties (survival and infectivity) of free-living stages of endohelminths, mainly trematodes, while fully recognizing that other parasitic life history stages in addition to the hosts can also be affected. As most parasite pollution studies have been carried out in aquatic habitats, this paper focuses on parasites of aquatic or amphibious hosts.     

The role of trematode parasites in larval anuran communities: an aquatic ecologist’s guide to the major players

Conservation strategies depend on our understanding of the ecosystem and community dynamics. To date, such understanding has focused mostly on predator–prey and competitor interactions. It is increasingly clear, however, that parasite–host interactions may represent a large, and important, component of natural communities. The need to consider multiple factors and their synergistic interactions if we are to elucidate the contribution of anthropogenic factors to loss in biodiversity is exemplified by research into present-day amphibian declines. Only recently has the role of factors such as trematode parasite infections been incorporated into studies of the population and community dynamics of aquatic systems. We argue that this is due, at least in part, to difficulties faced by aquatic ecologists in sifting through the complex systematics that pervade the parasite literature. We note that two trematode species are of dominant importance with regard to North American larval anuran communities, and provide in this review a clear explanation of how to distinguish between the infective stages of these two parasites. We describe the general biology and life history of these parasites, as well as what is known about their effect on larval anurans, and the interactive effects of environmental stressors (typically anthropogenic in nature) and parasites on larval anurans. We hope that this review will convince the reader of the potential importance of these parasites to aquatic communities in general, and to amphibian communities specifically, and will also provide the information necessary for aquatic ecologists to more frequently consider the role of these parasites in their studies of aquatic ecology.     

Biology of gastrointestinal nematodes of ruminants

The development and survival of free-living stages of gastro-intestinal nematodes of small ruminants are influenced by several abiotic and biotic factors. Within the abiotic factors, most important are the environmental temperature and humidity. They regulate the development of larvae from eggs dispersed on the pasture by the animals faeces. Each parasite species that infect ruminants requires a different time to development, depending on temperature and humidity. Among trichostrongylids, Ostertagia, Teladorsagia and Nematodirus show a strong adaptation to low temperatures. Nematodirus larvae are able to survive to winter inside the egg shell. Temperature and humidity influence the distribution and survival of larvae on pasture. The larval third stage can migrate from faeces to pasture vegetation and they accumulate at the basis of vegetation where stay during the day or in the soil to avoid the desiccation. The forage species affects the migration of larvae on herbage too. Many biological factors contribute to disperse the larvae on the pasture. Dung burying beetles, coprophagous beetles and earthworms can greatly reduce the larvae of some trichostrongylids on pasture. They contribute to the spread of the faecal material on the pasture and allow the larval death as a consequence of drying.     

Integrating Life Stages into Ecological Niche Models: A Case Study on Tiger Beetles

Detailed understanding of a species’ natural history and environmental needs across spatial scales is a primary requisite for effective conservation planning, particularly for species with complex life cycles in which different life stages occupy different niches and respond to the environment at different scales. However, niche models applied to conservation often neglect early life stages and are mostly performed at broad spatial scales. Using the endangered heath tiger beetle (Cicindela sylvatica) as a model species, we relate presence/absence and abundance data of locally dispersing adults and sedentary larvae to abiotic and biotic variables measured in a multiscale approach within the geographic extent relevant to active conservation management. At the scale of hundreds of meters, fine-grained abiotic conditions (i.e., vegetation structure) are fundamental determinants of the occurrence of both life stages, whereas the effect of biotic factors is mostly contained in the abiotic signature. The combination of dense heath vegetation and bare ground areas is thus the first requirement for the species’ preservation, provided that accessibility to the suitable habitat is ensured. At a smaller scale (centimetres), the influence of abiotic factors on larval occurrence becomes negligible, suggesting the existence of important additional variables acting within larval proximity. Sustained significant correlations between neighbouring larvae in the models provide an indication of the potential impact of neighbourhood crowding on the larval niche within a few centimetres. Since the species spends the majority of its life cycle in the larval stage, it is essential to consider the hierarchical abiotic and biotic processes affecting the larvae when designing practical conservation guidelines for the species. This underlines the necessity for a more critical evaluation of the consequences of disregarding niche variation between life stages when estimating niches and addressing effective conservation measures for species with complex life cycles.     

How and why environmental noise impacts animals: an integrative, mechanistic review

The scope and magnitude of anthropogenic noise pollution are often much greater than those of natural noise and are predicted to have an array of deleterious effects on wildlife. Recent work on this topic has focused mainly on behavioural responses of animals exposed to noise. Here, by outlining the effects of acoustic stimuli on animal physiology, development, neural function and genetic effects, we advocate the use of a more mechanistic approach in anthropogenic environments. Specifically, we summarise evidence and hypotheses from research on laboratory, domestic and free-living animals exposed to biotic and abiotic stimuli, studied both observationally and experimentally. We hope that this molecular- and cellular-focused literature, which examines the effects of noise on the neuroendocrine system, reproduction and development, metabolism, cardiovascular health, cognition and sleep, audition, the immune system, and DNA integrity and gene expression, will help researchers better understand results of previous work, as well as identify new avenues of future research in anthropogenic environments. Furthermore, given the interconnectedness of these physiological, cellular and genetic processes, and their effects on behaviour and fitness, we suggest that much can be learned from a more integrative framework of how and why animals are affected by environmental noise.     

The world within: Quantifying the determinants and outcomes of a host's microbiome

The fungal, bacterial, and viral microbial communities embedded as endosymbionts within all free-living organisms are extremely diverse and encode the vast majority of genes in the biosphere. Microbes in a human, for example, account for 100 times more genes than their host; similar results are emerging for virtually all free-living organisms. Disease is the best studied host–microbe interaction, but endosymbiotic microbial populations and communities also are responsible for critical functions in their hosts including nutrient uptake (plants), reduction in inflammatory responses (animals), digestion (animals), anti-herbivore defenses (plants), and pathogen resistance. In spite of the tremendous diversity and functional importance of the microbial biome to free-living organisms, we have little predictive understanding of the biotic and abiotic factors controlling within-host microbial community composition or the spatial scales at which anthropogenic changes affect host and microbial community interactions and functions. Current research suggests that anthropogenic changes to nutrient supply and food web composition can affect biological systems at scales ranging from individuals to continents. However, while current studies are clarifying the effects of some of these drivers on the structure and functioning of ecosystems, we have far less knowledge of their effects on microbial communities residing within hosts. Given the accelerating progress in metagenome studies, we are poised to make rapid advances in understanding the determinants and effects of within-host microbial communities.     

Environmental metabolomics: a critical review and future perspectives

Environmental metabolomics is the application of metabolomics to characterise the interactions of organisms with their environment. This approach has many advantages for studying organism–environment interactions and for assessing organism function and health at the molecular level. As such, metabolomics is finding an increasing number of applications in the environmental sciences, ranging from understanding organismal responses to abiotic pressures, to investigating the responses of organisms to other biota. These interactions can be studied from individuals to populations, which can be related to the traditional fields of ecophysiology and ecology, and from instantaneous effects to those over evolutionary time scales, the latter enabling studies of genetic adaptation. This review provides a comprehensive and current overview of environmental metabolomics research. We begin with an overview of metabolomic studies into the effects of abiotic pressures on organisms. In the field of ecophysiology, studies on the metabolic responses to temperature, water, food availability, light and circadian rhythms, atmospheric gases and season are reviewed. A section on ecotoxicogenomics discusses research in aquatic and terrestrial ecotoxicology, assessing organismal responses to anthropogenic pollutants in both the laboratory and field. We then discuss environmental metabolomic studies of diseases and biotic–biotic interactions, in particular herbivory. Finally, we critically evaluate the contribution that metabolomics has made to the environmental sciences, and highlight and discuss recommendations to advance our understanding of the environment, ecology and evolution using a metabolomics approach.     

Primary and secondary causes and consequences of contemporary forest decline

Realization that forest decline (Waldsterben) has become an ecological crisis throughout the developed world has resulted in massive research efforts to determine the causes of declines. It is now recognized that no single causal factor is responsible, but that there are a variety of anthropogenic causal factor complexes interacting with natural events and processes that, together, induce stresses in forests that culminate in declines of individual plants and of ecosystems. It is the thesis of this article that forest declines involve all biotic and abiotic facets and parameters of forested ecosystems and that the declines are themselves new causal factor complexes that continue to affect the stability of forested ecosystems independently of the initial causal factor complexes. Lacking direct field or laboratory studies on these cascades of causes and effects, this article attempts to utilize the growing body of information on plant physiological ecology to provide a heuristic framework for evaluating long-term forest declines.     

Tropics,trophics and taxonomy: the determinants of parasite‐associated host mortality

Empirical studies often reveal deleterious effects of parasites on host survival, but the ecological and environmental processes modulating parasite‐associated host mortality are not well understood. We conducted meta‐analysis of experimental studies assessing parasite‐associated mortality (n = 52) to evaluate broad‐scale patterns in host mortality risk relative to host or parasite taxon, parasite life cycle, or local environmental conditions. Overall, likelihood of host mortality was ～2.6 times higher among infected individuals when compared with hosts that either lacked parasites or had experimentally‐reduced parasite burdens. Parasites with complex life cycles reliant on predation‐mediated transmission generally were associated with higher mortality risk than those exploiting other transmission strategies. We also detected a negative relationship between parasite‐associated host mortality and latitude; host mortality risk declined by ～2.6% with each degree increase in latitude. This result indicated the likely importance of abiotic factors in determining parasite effects. Host taxonomy further influenced parasite‐associated mortality risk, with amphibian, fish, and mollusc hosts generally having higher hazard than arthropod, mammal, and bird hosts. Our results suggest patterns that conform to the predicted link between host mortality and parasite transmissibility, and pathogenicity. The relationship between host mortality and latitude in particular may portend marked shifts in host–parasite relationships pursuant to ongoing and projected global climate change.     

Adaptation to abiotic conditions drives local adaptation in bacteria and viruses coevolving in heterogeneous environments

Parasite local adaptation, the greater performance of parasites on their local compared with foreign hosts, has important consequences for the maintenance of diversity and epidemiology. While the abiotic environment may significantly affect local adaptation, most studies to date have failed either to incorporate the effects of the abiotic environment, or to separate them from those of the biotic environment. Here, we tease apart biotic and abiotic components of local adaptation using the bacterium Pseudomonas fluorescens and its viral parasite bacteriophage Φ2. We coevolved replicate populations of bacteria and phages at three different temperatures, and determined their performance against coevolutionary partners from the same and different temperatures. Crucially, we measured performance at different assay temperatures, which allowed us to disentangle adaptation to biotic and abiotic habitat components. Our results show that bacteria and phages are more resistant and infectious, respectively, at the temperature at which they previously coevolved, confirming that local adaptation to abiotic conditions can play a crucial role in determining parasite infectivity and host resistance. Our work underlines the need to assess host–parasite interactions across multiple relevant abiotic environments, and suggests that microbial adaption to local temperatures can create ecological barriers to dispersal across temperature gradients.     

海草生物量和初级生产力研究进展

海草床是近岸重要的湿地生态系统,具有较高生物量和生产力。海草的生物量和生产力变化除了受到光照、无机碳源、营养盐、温度、盐度、水动力条件、铁限制和污染物等非生物因素制约外,还受到附生藻类和动物摄食等生物因素影响。非生物因素一般有最适合海草生长的范围,生物因素的影响具有两面性。海草生物量和生产力研究基本处于由定性向定量过渡阶段,准确便捷的方法、现场多因子围隔实验、更大时空尺度上的对比研究是今后研究的重点。     

Dispersal process driving subtropical forest reassembly: evidence from functional and phylogenetic analysis

Understanding the mechanisms of secondary succession related to forest management practices is receiving increasing attention in community ecology and biodiversity conservation. Abiotic and biotic filtering are deterministic processes driving community reassembly. A functional trait or phylogeny-based approach predicts that environmental filtering induced by clearcut-logging results in functional/phylogenetic clustering in younger forests, while biotic filtering (competitive exclusion) promotes functional/phylogenetic overdispersion in old-growth forests. From this perspective, we examined the patterns of functional/phylogenetic structures using tree community data (147 species × 170 plots). These data were chronosequenced from clearcut secondary forests to old-growth subtropical forests in the Ryukyu Archipelago, with species’ trait data (leaf and stem) and species level phylogeny. To detect clustering or overdispersion in the functional and phylogenetic structures, we calculated the standardized effect size of mean nearest trait distance and mean nearest phylogenetic distance within the plots. Functional or phylogenetic clustering was relatively weak in secondary forests, and their directional change with increasing forest age was not generally detected. Mean nearest trait/phylogenetic distance for most plots fell within the range of random expectation. The results suggest that abiotic/biotic filtering related to functional traits or phylogenetic relatedness plays a diminished role in shaping species assembly during secondary succession in the subtropical forest. Our findings of functional and phylogenetic properties might shed light on the importance of dispersal (stochastic) processes in the regional species pool during community reassembly after anthropogenic disturbance. It will also contribute to the development of coordinated schemes that maintain potential species assembly processes in the subtropical forest.     

Toward an integrated ecosystem perspective of invasive species impacts

Progress in the study of ecosystem impacts of invasive species can be facilitated by moving from the evaluation of invasive species impacts on particular processes to the analysis of their overall effects on ecosystem functioning. Here we propose an integrative ecosystem-based approach to the analysis of invasive species impacts that is based on an understanding of the general mechanistic links between biotic factors, abiotic factors, and processes in ecosystems. Two general kinds of biotic mediation – direct and indirect – and two general mechanisms of invasive species impact – assimilatory–dissimilatory (uptake and release of energy and materials) and physical ecosystem engineering (physical environmental modification by organisms) – are most relevant. By combining the biotic mediation pathways and the general mechanisms, four general situations emerge that characterize a great many of the impacts invasive species can have on ecosystem processes. We propose ways to integrate these distinctive impacts into general mechanistic representations that link ecosystem processes with changes in biotic and abiotic states (changes in structure, composition, amount, process rates, etc.). In turn, these help generate predictions about the interplay of invasive species and other drivers of ecosystem processes that are of particular relevance to ecosystems where invasive species co-occur with other anthropogenic impacts.     

Decapod Larvae: Dispersal, Mortality, and Ecology. A Working Hypothesis

TWO topics on decapod larval biology are discussed: retentionand recruitment of decapod larvae to the parental populationand the ecological role of decapod larvae in the water column. Most decapods have retained a planktonic larval phase whichis generally interpreted as a mechanism for increased dispersal.Evidence of restricted gene flow and biological/physical interactionresearch have suggested that larvae can be retained and recruitedto the parental population via mesoscale processes. To fullyunderstand recruitment processes improved estimates of mortalityrates for planktonic larval stages will be required. Recentevidence suggests that mortality rates are not constant overthe complete larval developmental period but decrease with time. During some seasons meroplankton including decapod l arvae canconstitute more than 50% of the plankton biomass. The quantityof energy transferred into the water column can be significant.Their role in planktonic ecology may be significant and additionalresearch is required.     

Reduction in the cumulative effect of stress-induced inbreeding depression due to intragenerational purging in Drosophila melanogaster

Environmental stress generally exacerbates the harmful effects of inbreeding and it has been proposed that this could be exploited in purging deleterious alleles from threatened inbred populations. However, understanding what factors contribute to variability in the strength of inbreeding depression (ID) observed across adverse environmental conditions remains a challenge. Here, we examined how the nature and timing of stress affects ID and the potential for purging using inbred and outbred Drosophila melanogaster larvae exposed to biotic (larval competition, bacteria infection) and abiotic (ethanol, heat) stressors compared with unstressed controls. ID was measured during (larval survival) and after (male mating success) stress exposure. The level of stress imposed by each stressor was approximately equal, averaging a 42% reduction in outbred larval survival relative to controls. All stressors induced on average the same ID, causing a threefold increase in lethal equivalents for larval survival relative to controls. However, stress-induced ID in larval success was followed by a 30% reduction in ID in mating success of surviving males. We propose that this fitness recovery is due to ‘intragenerational purging'' whereby fitness correlations facilitate stress-induced purging that increases the average fitness of survivors in later life history stages. For biotic stressors, post-stress reductions in ID are consistent with intragenerational purging, whereas for abiotic stressors, there appeared to be an interaction between purging and stress-induced physiological damage. For all stressors, there was no net effect of stress on lifetime ID compared with unstressed controls, undermining the prediction that stress enhances the effectiveness of population-level purging across generations.     

Investigating Niche Construction in Dynamic Human-Animal Landscapes: Bridging Ecological and Evolutionary Timescales

Human influence on the environment is evident at all landscape and ecological scales, from local to global, shaping both abiotic and biotic processes. Niche construction theory provides a means by which to investigate the consequences of these anthropogenic effects, but primatological research has been slow to integrate ecological and evolutionary timelines. We review methods that can be used to study how human niche construction influences nonhuman primates including phenological assessment, nonhuman primate behavioral observations, and ethnographic interview techniques. We argue that this approach provides a starting place to examine niche construction theory but that scholars of primate behavioral ecology must expand our methodologies to bridge the disconnect between ecological and evolutionary research time frames. We suggest areas of research and methods that have been underused but offer opportunities for integrative, innovative research. We conclude that an integrated, synthetic methodological approach is a major goal and that it will likely require a cross-disciplinary, collaborative effort.     

Have chondracanthid copepods co-speciated with their teleost hosts?

Chondracanthid copepods parasitise many teleost species and have a mobile larval stage. It has been suggested that copepod parasites, with free-living infective stages that infect hosts by attaching to their external surfaces, will have co-evolved with their hosts. We examined copepods from the genus Chondracanthus and their teleost hosts for evidence of a close co-evolutionary association by comparing host and parasite phylogenies using TreeMap analysis. In general, significant co-speciation was observed and instances of host switching were rare. The prevalence of intra-host speciation events was high relative to other such studies and may relate to the large geographical distances over which hosts are spread.     

Parasite and host assemblages: embracing the reality will improve our knowledge of parasite transmission and virulence

Interactions involving several parasite species (multi-parasitized hosts) or several host species (multi-host parasites) are the rule in nature. Only a few studies have investigated these realistic, but complex, situations from an evolutionary perspective. Consequently, their impact on the evolution of parasite virulence and transmission remains poorly understood. The mechanisms by which multiple infections may influence virulence and transmission include the dynamics of intrahost competition, mediation by the host immune system and an increase in parasite genetic recombination. Theoretical investigations have yet to be conducted to determine which of these mechanisms are likely to be key factors in the evolution of virulence and transmission. In contrast, the relationship between multi-host parasites and parasite virulence and transmission has seen some theoretical investigation. The key factors in these models are the trade-off between virulence across different host species, variation in host species quality and patterns of transmission. The empirical studies on multi-host parasites suggest that interspecies transmission plays a central role in the evolution of virulence, but as yet no complete picture of the phenomena involved is available. Ultimately, determining how complex host–parasite interactions impact the evolution of host–parasite relationships will require the development of cross-disciplinary studies linking the ecology of quantitative networks with the evolution of virulence.     

Factors linked to interannual variation in the metazoan parasite communities of black skipjack,Euthynnus lineatus (Pisces: Scombridae)

Marine parasite communities can exhibit temporal and spatial changes in response to seasonal and local variations in several biotic and abiotic environmental factors. Limited attention has been given to the influence of abiotic factors, so their effects on parasite community structure remain unclear. A total of 496 specimens of Euthynnus lineatus were collected over a 7‐year period (2012–2018) from Acapulco Bay, Mexico. Their parasite communities were analyzed to determine if they experience interannual variations due to local biotic and abiotic factors. Thirty‐three metazoan parasite species were recovered and identified: four species of Monogenea (adults); 16 of Digenea (one larvae and 15 adults); two of Acanthocephala (adults); two of Cestoda (larvae); three of Nematoda (two larvae and one adult); and six of Crustacea (three Copepoda, and three Isopoda). Species richness was greatest among the digeneans, which represented 48% of the total species recovered, followed by the crustaceans (19% of total species). Species richness at the component community level (14–24 species) was similar to reported richness in other small tuna species. The component communities and infracommunities of E. lineatus exhibited a similar pattern: high species richness and diversity, and numerical dominance by a single species, mainly by one of the didymozoids Allopseudocolocyntotrema claviforme or Pseudocolocyntotrema yaito. Parasite community structure and species composition varied among sampling years. Variations were possibly caused by a combination of abiotic and biotic factors which generated notable changes in the infection levels of several component species during the study period. These communities may therefore be unpredictable in terms of structure and species composition, as has been suggested for other communities of marine parasites.