A method to measure redox potential (Eh) and pH in agar media and plants shows that fungal growth is affected by and affects pH and Eh

The specificities of the plant environment and its effects on fungal growth are not yet fully explored. Both pH and Eh play a key role during this interaction, but are often studied independently or at different scales. We aimed at investigating whether the methods developed for the joint characterization of the pH and Eh in soil could be transposed to fungi. On artificial media, the growth of all 16 species tested significantly altered either Eh, pH or both. Measuring Eh reveals that even the species not modifying pH can have an impact on the surrounding environment. Reciprocally, fungi responded to pH and Eh parameters, both quantitatively with a decrease in colony diameter and qualitatively with colony aspect repeatedly and thoroughly modified. In infected oilseed rape plant stems, pH and Eh were significantly altered. The observed alcalinisation or acidification correlates with canker length. The joint characterization of both parameters will allow understanding the impact of fungi on their environment, and conversely of the environment on fungal growth. The availability of methods for measurement opens the prospect to study combinations of stresses, and get an understanding of the involvement of pH and Eh modifications in these interactions.     

Transfer of rare earth elements (REE) from natural soil to plant systems: implications for the environmental availability of anthropogenic REE

Background and aims

Rare Earth Elements (REE) are widely used to trace natural geochemical processes. They are also increasingly used by man (electronics industry, medicine, agriculture) and therefore considered as emerging pollutants. The present study documents REE mobility in non-polluted natural soil-plant systems in order to characterize their environmental availability for future anthropogenic pollution.

Methods

The study is based on a field approach in non-polluted natural sites with contrasting geological environments (limestone, granite, and carbonatite) and highly variable REE contents.

Results

REE concentrations in soils do not directly reflect bedrock concentrations, but depend largely on pedogenetic processes and on the mineralogy of bedrock and soil. The soils of all sites are with respect to bedrock enriched in heavy REE. The REE uptake by plants is not primarily controlled by the plant itself, but depends on the concentration and the speciation in the soil and the adsorbed soil water pool.

Conclusions

REE uptake by plant roots are linked with those of Fe. Roots absorb preferentially the light REE. Before translocation, REE are retained by the Casparian strip leading to much lower concentrations in the aerial parts. The transport of the REE within the xylem is associated with the general nutrient flux.     

Application of microelectrode technique to measure pH and oxidoreduction potential gradients in gelled systems as model food

A microelectrode system is used in order to simultaneously measure pH and oxidoreduction potential (Eh) gradients developed during growth by Escherichia coli and Lactobacillus plantarum immobilized in gelled media used as model food. Unlike E. coli, L. plantarum steadily decreased medium pH independently of depth of measurement and time of incubation. Both bacteria brought about the creation of an Eh gradient throughout the gelled medium. This gradient was much more important for E. coli (700 mV) than for L. plantarum (80 mV) but more transitory.     

The effect of elevated CO2 concentration and soil pH on the relationship between plant growth and rhizosphere denitrification potential

The effect of CO₂ concentration on plant growth and the size of the rhizosphere denitrifier population was investigated for ryegrass grown at 3 different soil pH values (pH 4.3, 5.9 and 7.0). Soil microcosms were planted with ryegrass and maintained under constant growth conditions at either ambient (450ppm) or elevated (720ppm) CO₂ concentration. At harvest, the rhizosphere soil was collected and subjected to a potential denitrification assay to provide an estimate of the size of the denitrifier population present. Ryegrass dry matter production varied across the pH range studied and contrary to other studies, elevated CO₂ concentration did not consistently increase growth. Plant growth was reduced by ≈ 35% and 23% at pH 4.3 and pH 5.9, respectively, under elevated CO₂ concentration. At pH 7.0, however, plant growth was increased by ≈ 45% under elevated CO₂. Potential denitrification rates within the rhizosphere followed a similar pattern to plant growth in the different treatments, suggesting that plant growth and the size of denitrifier population within the rhizosphere are coupled. This study investigates the relationship between plant growth and rhizosphere denitrification potential, thereby providing an estimate of the size of the denitrifier population under increased CO₂ concentration and soil pH.     

Magnesium biofortification of Italian ryegrass (Lolium multiflorum L.) via agronomy and breeding as a potential way to reduce grass tetany in grazing ruminants

Plant and Soil - Magnesium (Mg) deficiency (known as grass tetany) is a serious metabolic disorder that affects grazing ruminants. We tested whether Mg-fertiliser can increase Mg concentration of...     

Influence of soil pH on the nitrate-reducing microbial populations and their potential to reduce nitrate to NO and N2O

Abstract After the introduction of Rhizobium leguminosarum biovar trifolii into natural loamy sand and silt loam, bacterial numbers increased only directly after inoculation. Thereafter, bacterial numbers decreased until an equilibrium was reached. This decrease was exponential on a log scale and could be described by the function Y = A + B − R ', where Y is the log number of rhizobial cells at time: T ; A represents the lgo of the final population size; B is the difference between the log (initial number of bacteria) and A ; R is the daily reduction factor of Y−A and t is time in days after inoculation. The final population sizes increased with increasing inoculum densities (10⁴−10⁸ bacteria/g soil). In sterilized soil, however, the populations increased up to an equilibrium, which was not affected by the inoculum density.
The final population sizes were higher in silt loam than in loamy sand in natural, as well as in sterilized soil. The final population size was reached earlier in natural silt loam than in loamy sand. Also the growth rate in sterilized soil was higher in silt loam than in loamy sand. The growth rate of low inoculum densities in silt loam was exponential and approximately the same as in yeast extract mannitol broth. The growth rate in loamy sand could be improved by incresing the bulk density of the soil from 1.0 to 1.4 g/cm³.     

Germplasm-regression-combined (GRC) marker-trait association identification in plant breeding: a challenge for plant biotechnological breeding under soil water deficit conditions

In the past 20 years, the major effort in plant breeding has changed from quantitative to molecular genetics with emphasis on quantitative trait loci (QTL) identification and marker assisted selection (MAS). However, results have been modest. This has been due to several factors including absence of tight linkage QTL, non-availability of mapping populations, and substantial time needed to develop such populations. To overcome these limitations, and as an alternative to planned populations, molecular marker–trait associations have been identified by the combination between germplasm and the regression technique. In the present preview, the authors (1) survey the successful applications of germplasm–regression–combined (GRC) molecular marker–trait association identification in plants; (2) describe how to do the GRC analysis and its differences from mapping QTL based on a linkage map reconstructed from the planned populations; (3) consider the factors that affect the GRC association identification, including selections of optimal germplasm and molecular markers and testing of identification efficiency of markers associated with traits; and (4) finally discuss the future prospects of GRC marker–trait association analysis used in plant MAS/QTL breeding programs, especially in long-juvenile woody plants when no other genetic information such as linkage maps and QTL are available.     

Sphaceloma poinsettiae as a potential biological control agent for wild poinsettia (Euphorbia heterophylla)

Sphaceloma poinsettiae, a scab-causing fungus that attacks wild poinsettia (Euphorbia heterophylla) was evaluated as a mycoherbicide. Plants representing nine different E. heterophylla accessions were tested and variable resistance levels to 10 different isolates of S. poinsettiae were observed. One isolate was selected based on its high aggressiveness; it caused scab that led to stem-girdling in the majority of plants belonging to most wild poinsettia accessions. Plants inoculated with conidial suspension developed low disease severity; suspensions of mycelial fragments caused higher disease severity. Viability of mycelium declined rapidly either in storage under room temperature or at 4 °C. After 25 days, 60% of mycelial fragments kept in distilled water at 4 °C or in 35% sterile sucrose solution germinated. Cultures of S. poinsettiae were capable of growing at temperatures ranging from 10 to 30 °C (maximum growth at 25 °C) whereas the mycelial fragments germinated at 20–30 °C. The highest mycelial yield occurred in potato-dextrose broth after culturing for 12 days at 168 rpm at room temperature. A host-range test involving 37 plant species in addition to wild poinsettia indicated that S. poinsettiae is highly specific to E. heterophylla. The viability of S. poinsettiae as a mycoherbicide depends on the development of suitable mass production, formulation, and inoculum preservation methods. On several occasions, this fungus has been observed to cause devastating epidemics in the field on this host; therefore, it should be considered a potential biocontrol agent of wild poinsettia.     

Alternanthera bettzickiana (Regel) G. Nicholson,a potential halophytic ornamental plant: Growth and physiological adaptations

Exploration and cultivation of salt tolerant plants is a very effective strategy for utilization of salt affected soils. In this investigation, physiological traits that are conducive for salt tolerance of the ornamental plant Alternanthera bettzickiana, Amaranthaceae, were explored. A. bettzickiana was grown on soil substrate having six salinity levels (2.86, 10, 20, 30, 40 and 50 dS m⁻¹). It was observed that this plant can grow even at a salinity level of 40 dS m⁻¹. The survival rate of this plant was 75, 42 and 0% at salinity levels of 30, 40 and 50 dS m⁻¹, respectively. A. bettzickiana plants produced 30.3% less biomass than controls at the salinity level of 20 dS m⁻¹ and even less under still higher salt stress. Photosynthesis continued even at the salinity level of 40 dS m⁻¹, though its rate was reduced to 59% in plants exposed to such salinity relative to plants not affected by salinity. Total soluble proteins values in leaf and stem showed a gradual increase when plants were exposed to increasing salt stress. Plants growing at the high salinity level showed highest decrease in leaf nitrate reductase activity. A. bettzickiana plants accumulated less Na⁺ in shoot as compared to root when grown under salt stress. It can be characterized as a salt-tolerant glycophyte that could be used for greening of salt affected soils.     

Computation of physicochemical parameters, namely pH, in complex (bio)chemical systems: extension to gas-liquid systems

The first model has been proposed to compute, in complex liquid (bio)chemical systems, a number of physicochemical parameters, namely pH, concentration of one of any chemical species, partition between acid-base forms, global charge, or ionic strength, assuming the physicochemical equilibrium state. The extension of the present model, described here, permits moreover the computation of gas-liquid distributions, specific gas volumes, or total pressures. The model solely requires the knowledge of existing thermodynamic constants and of the concentration of every chemical species other than the species under examination. The model elicits a unique equilibrium state. Computed values agreed with experimental measurements, thereby validating the model. Digital computer programs were prepared to use the proposed algorithms.     

Plectin: general overview and appraisal of its potential role as a subunit protein of the cytomatrix

Plectin has recently been identified as a widespread and abundant cytoplasmic protein of mammalian cells. In this article the available data on plectin are reviewed, focusing on plectin's occurrence and localization in various cell types and tissues, its biochemical characterization, and its molecular interaction partners. Furthermore, the putative role of this protein has a multifunctional connecting link of the cytomatrix and its structural as well as functional relationship to other cytoskeletal proteins is discussed. It is concluded that plectin is potentially the most versatile crosslinking element of the cytomatrix reported to date.     

The inhibition of exogenous NAD(P)H oxidation in plant mitochondria by chelators and mersalyl as a function of pH

The oxidation of exogenous NADH by Jerusalem artichoke ( Helianthus tuberosus L.) tuber mitochondria was strongly inhibited at pH 7.2 by EDTA, EGTA and mersalyl and by chlorotetracycline in the presence of Ca²⁺. This inhibition disappeared at pH 5.5 where about 50% activity was found as compared to controls at pH 7.2. The rate of oxidation of NADPH at pH 5.5 was the same as for NADH but it was inhibited by 50% by both EDTA and mersalyl.
Mitochondria from Arum maculatum spadices oxidised NADH and NADPH with pH optima of 7.2 and 6.5, respectively. In the presence of EDTA the optima shifted to 6.7 and 5.9, respectively, due to an inhibition at higher pH and a lack of inhibition at lower pH. At pH 6.7 NADH oxidation was completely insensitive to both EDTA and mersalyl whereas the oxidation of NADPH was inhibited by more than 50%. The inhibition of NAD(P)H oxidation by chelators at neutral pH was due to the removal of Ca²⁺ from the membranes in both types of mitochondria. The differences observed in the properties of NADH and NADPH oxidation suggest that two different dehydrogenases are involved. Because of the strong pH-dependence and the changes in chelator-sensitivity in the physiological pH-range 6–8 it is suggested that the properties of NAD(P)H oxidation provide the cell with important means of metabolic regulation.     

濒危植物东方水韭（Isoёtes orientalis）自然生境土壤营养状况及水体pH值分析

对东方水韭(Iso(e)tes orientalis H. Liu et Q. F. Wang) 2个自然样地(浙江松阳叔婆湾和小烂湖)生境土壤主要营养成分含量进行了比较分析,并对叔婆湾样地水体pH值进行了测定,在此基础上,对导致东方水韭濒危的土壤及水体因素进行了讨论.结果显示:东方水韭叔婆湾样地的土壤有机质、总氮、速效磷、速效钾和总铁离子(包括Fe3+和Fe2+)含量分别为102.7 g·kg-1、3.1 g·kg-1、18.1 μg·g-1、15.0 μg·g-1和221.6 μg·g-1;小烂湖样地土壤中上述营养成分的含量分别为122.8 g·kg-1、4.8 g·kg-1、13.7 μg·g-1、7.1 μg·g-1和240.0 μg·g-1.小烂湖样地土壤中有机质、总氮和速效钾含量显著或极显著高于叔婆湾样地,2个样地间速效磷和总铁离子含量差异不显著, 但2个样地土壤中速效钾含量极低、总铁离子含量丰富. 叔婆湾样地中上、中、下游水体的pH值分别为pH 6.35、pH 6.53和pH 6.49,略呈中性.分析结果表明,东方水韭2个自然样地的土壤均为有机质、总氮、速效磷以及总铁离子含量较为丰富且速效钾含量较低的土壤类型,土壤中速效钾极度缺乏和水体中性化很可能是限制东方水韭种群发展的重要环境因素.     

Introduction of Glossostigma (Phrymaceae) to North America: a taxonomic and ecological overview

Field surveys in eastern North America confirm the naturalization of Glossostigma plants at 19 localities in four states: Connecticut, New Jersey, Pennsylvania, and Rhode Island. DNA sequence analysis of individuals from 14 sampled populations identifies these nonindigenous plants as Glossostigma cleistanthum, a species native to Australia and New Zealand. These results correct prior misidentifications of North American plants as G. diandrum. The earliest North American record of G. cleistanthum (1992) is from a Ramsar tidal wetland in Connecticut. Morphological analyses demonstrate that G. cleistanthum differs from G. diandrum by its longer leaves and ability to produce both cleistogamous and chasmogamous flowers in response to ecological conditions. Glossostigma cleistanthum has a high reproductive potential and spreads rapidly within and between both artificial and natural habitats. A survey of more than 100 lakes indicated that G. cleistanthum occurs most often in waters with high clarity and low pH, alkalinity, conductivity, and phosphorous. Because of its affinity for oligotrophic conditions, this species is a particular threat to pristine natural aquatic communities, which often contain imperiled plants.     

Synthesis and characterization of a perchlorotriphenylmethyl (trityl) triester radical: a potential sensor for superoxide and oxygen in biological systems

Synthesis and characterization of an inert perchlorotriphenylmethyl triester radical, PTM-TE, are reported. PTM-TE was prepared by a facile 3-step synthesis using Friedel-Crafts reaction of tetrachlorobenzene with chloroform followed by ethoxycarbonylation and subsequent oxidation. PTM-TE is paramagnetic and exhibits a single sharp EPR spectrum. In solution, the EPR linewidth of PTM-TE is highly sensitive to the dissolved oxygen content, thus enabling accurate measurement of oxygen concentration (oximetry). In addition, the radical also shows high reactivity towards superoxide. The ester radical has the potential for use as a high-sensitive probe for determination of oxygen concentration and superoxide in biological systems.     

Fungi,bacteria and soil pH: the oxalate–carbonate pathway as a model for metabolic interaction

The oxalate–carbonate pathway involves the oxidation of calcium oxalate to low‐magnesium calcite and represents a potential long‐term terrestrial sink for atmospheric CO ₂. In this pathway, bacterial oxalate degradation is associated with a strong local alkalinization and subsequent carbonate precipitation. In order to test whether this process occurs in soil, the role of bacteria, fungi and calcium oxalate amendments was studied using microcosms. In a model system with sterile soil amended with laboratory cultures of oxalotrophic bacteria and fungi, the addition of calcium oxalate induced a distinct pH shift and led to the final precipitation of calcite. However, the simultaneous presence of bacteria and fungi was essential to drive this pH shift. Growth of both oxalotrophic bacteria and fungi was confirmed by qPCR on the frc (oxalotrophic bacteria) and 16S rRNA genes, and the quantification of ergosterol (active fungal biomass) respectively. The experiment was replicated in microcosms with non‐sterilized soil. In this case, the bacterial and fungal contribution to oxalate degradation was evaluated by treatments with specific biocides (cycloheximide and bronopol). Results showed that the autochthonous microflora oxidized calcium oxalate and induced a significant soil alkalinization. Moreover, data confirmed the results from the model soil showing that bacteria are essentially responsible for the pH shift, but require the presence of fungi for their oxalotrophic activity. The combined results highlight that the interaction between bacteria and fungi is essential to drive metabolic processes in complex environments such as soil.     

Digestive alpha-amylases from Tecia solanivora larvae (Lepidoptera: Gelechiidae): response to pH, temperature and plant amylase inhibitors

The biochemical properties of the digestive alpha-amylase from Tecia solanivora larvae, an important and invasive insect pest of potato (Solanum tuberosum), were studied. This insect has three major digestive alpha-amylases with isoelectric points 5.30, 5.70 and 5.98, respectively, which were separated using native and isoelectric focusing gels. The alpha-amylase activity has an optimum pH between 7.0 and 10.0 with a peak at pH 9.0. The enzymes are stable when heated to 50 degrees C and were inhibited by proteinaceous inhibitors from Phaseolus coccineus (70% inhibition) and P. vulgaris cv. Radical (87% inhibition) at pH 6.0. The inhibitors present in an amaranth hybrid inhibited 80% of the activity at pH 9.0. The results show that the alpha-amylase inhibitor from amaranth seeds may be a better candidate to make genetically-modified potatoes resistant to this insect than inhibitors from common bean seeds.