Hurricane storm surge and amphibian communities in coastal wetlands of northwestern Florida

Isolated wetlands in the Southeastern United States are dynamic habitats subject to fluctuating environmental conditions. Wetlands located near marine environments are subject to alterations in water chemistry due to storm surge during hurricanes. The objective of our study was to evaluate the effect of storm surge overwash on wetland amphibian communities. Thirty-two wetlands in northwestern Florida were sampled over a 45-month period to assess amphibian species richness and water chemistry. During this study, seven wetlands were overwashed by storm surge from Hurricane Dennis which made landfall 10 July 2005 in the Florida panhandle. This event allowed us to evaluate the effect of storm surge overwash on water chemistry and amphibian communities of the wetlands. Specific conductance across all wetlands was low pre-storm (<100 μS/cm), but increased post-storm at the overwashed wetlands ([`(x)] \bar{x}  = 7,613 μS/cm). Increased specific conductance was strongly correlated with increases in chloride concentrations. Amphibian species richness showed no correlation with specific conductance. One month post-storm we observed slightly fewer species in overwashed compared with non-overwashed wetlands, but this trend did not continue in 2006. More species were detected across all wetlands pre-storm, but there was no difference between overwashed and non-overwashed wetlands when considering all amphibian species or adult anurans and larval anurans separately. Amphibian species richness did not appear to be correlated with pH or presence of fish although the amphibian community composition differed between wetlands with and without fish. Our results suggest that amphibian communities in wetlands in the southeastern United States adjacent to marine habitats are resistant to the effects of storm surge overwash.     

Amphibian phenotypic variation along a gradient in canopy cover: species differences and plasticity

The distributions of many freshwater organisms correlate with a gradient in canopy cover, ranging from sunny wetlands to closed woodland ponds. Little is known about mechanisms that exclude species from some sections of the gradient while allowing persistence in others. I addressed this question by manipulating shading in 740‐l outdoor mesocosms and measuring several ecologically‐relevant traits in three species of amphibian larva (Rana temporaria and Triturus alpestris, generalists occupying the entire gradient; and Hyla arborea, a specialist in open habitats). Shading caused delayed development, but had no effect on survival and increased the growth rate of R. temporaria. Body and tail color were darker in the shade. Plasticity in morphological shape, consisting of reduced gut width and increased tail size under shaded conditions, may reflect poor food availability and low dissolved oxygen. The canopy generalist R. temporaria increased activity in the shade, spent more time basking in shallow water, and maintained high larval performance. Unexpectedly, the specialist H. arborea was also highly plastic. These results describe extensive phenotypic plasticity induced by shade, and highlight traits that may influence performance along the canopy gradient.     

Leaf litter input mediates tadpole performance across forest canopy treatments

Understanding the mechanisms limiting the distributions of organisms is necessary for predicting changes in community composition along habitat gradients. In many areas of the USA, land originally cleared for agriculture has been undergoing a process of reforestation, creating a gradient of canopy cover. For small temporary wetlands, this gradient can alter abiotic conditions and influence the resource base of wetland food webs by affecting litter inputs. As distributions of amphibians and many other temporary wetland taxa correlate with canopy cover, we experimentally manipulated shade levels and litter types in pond mesocosms to explore mechanisms limiting species performance in wetlands with canopy cover. Most differences between ponds were mediated by litter type rather than direct effects of shading. Although all three amphibian species tested are open-canopy specialists, spring peepers were the only species to show decreased survival in shaded ponds. Pond litter type generally had strong effects on growth and development rates, with tadpoles of two species in grass litter ponds growing to twice the size of, and metamorphosing 7 days earlier than, those in leaf litter ponds. Contrary to our initial hypothesis, shade level and litter type showed very few significant interactions. Our results indicate that the effects of shading cannot be considered in isolation of vegetation changes in pond basins when evaluating the effects of forest succession on temporary pond communities.     

Pond-Breeding Amphibian Species Richness and Habitat Selection in a Beaver-Modified Landscape

ABSTRACT Beaver (Castor canadensis) activity creates wetland habitats with varying hydroperiods important in maintaining habitat diversity for pond-breeding amphibians with significantly different breeding habitat requirements. We documented pond-breeding amphibian assemblages in 71 freshwater wetlands in Acadia National Park, Maine, USA. Using 15 variables describing local pond conditions and wetland landscape characteristics, we developed a priori models to predict sites with high amphibian species richness and used model selection with Akaike's Information Criterion to judge the strength of evidence supporting each model. We developed single-species models to predict wood frog (Rana sylvatica), bullfrog (R. catesbeiana), and pickerel frog (R. palustris) breeding site selection. Sites with high species richness were best predicted by 1) connectivity of wetlands in the landscape through stream corridors and 2) wetland modification by beaver. Wood frog breeding habitat was best predicted by temporary hydroperiod, lack of fish, and absence of current beaver activity. Wood frog breeding was present in abandoned beaver wetlands nearly as often as in nonbeaver wetlands. Bullfrog breeding was limited to active beaver wetlands with fish and permanent water. Pickerel frog breeding sites were best predicted by connectivity through stream corridors within the landscape. As beavers have recolonized areas of their former range in North America, they have increased the number and diversity of available breeding sites in the landscape for pond-breeding amphibians. The resulting mosaic of active and abandoned beaver wetlands both supports rich amphibian assemblages and provides suitable breeding habitat for species with differing habitat requirements. Land managers should consider the potential benefits of minimal management of beavers in promoting and conserving amphibian and wetland diversity at a landscape scale.     

The relative importance of wetland size and hydroperiod for amphibians in southern New Hampshire,USA

In the United States, the regulatory approach to wetland protection has a traditional focus on size as a primary criterion, with large wetlands gaining significantly more protection. Small, isolated wetlands have received less protection; however, these wetlands play a significant role in the maintenance of biodiversity of many taxonomic groups, including amphibians. An important question for directing conservation and management efforts for amphibians is whether size is a useful criterion for regulatory decisions. Because hydroperiod has an important influence on amphibian composition in wetlands, I conducted a study to examine the relative influence of wetland size and hydroperiod on amphibian occurrence. I sampled 103 wetlands in southern New Hampshire in 1998 and 1999 using dipnet sampling to document the presence of larval amphibians. Wetlands were placed into one of three hydroperiod categories; short (<4 months), intermediate (4–11 months), or long (permanent) based on field observations of drying pattern. Wetland size was determined from digitized national wetland inventory (NWI) maps (most wetlands) or measured in the field. I examined patterns of amphibian species richness and individual species occurrence using generalized linear models. Wetland size ranged from 0.01 to 3.27 ha. Overall, species richness was significantly influenced by hydroperiod (χ² = 18.6, p <0.001), but not size (χ² = 1.4, p = 0.24). Examination within hydroperiod categories revealed several significant relationships with wetland size. Species richness was related to wetland size in wetlands with short and intermediate hydroperiods, but not wetlands with long hydroperiods. Wetland size does not appear to be a useful sole criterion for determining wetland functional value for amphibians; assessments of functions of seasonally inundated wetlands for amphibians would benefit from examination of hydroperiod.     

Relationships among Amphibian Assemblage Structure,Wetland pH,and Forest Cover

A common mesofilter approach to conservation of biological diversity and ecosystem function used in agricultural and urban landscapes is maintenance of wetlands and an undisturbed terrestrial buffer surrounding wetlands. Although it is generally accepted that forest buffers protect wetland-associated biological diversity and ecosystem function, the effectiveness and optimal spatial extent of buffers is still an area of debate. During 2007 and 2008 we surveyed amphibians and environmental conditions associated with 54 depression wetlands on the Delmarva Peninsula of Maryland, USA, to examine the role of forest buffers and wetland characteristics in structuring amphibian communities. Forest cover within a 50-m buffer surrounding wetlands was correlated (r = −0.81) with wetland pH but no other wetland characteristics. Wetland pH, canopy cover, hydroperiod, and adjacent forest cover were important predictors of wetland use by individual amphibian species, with many species more likely to occur at wetlands that dried late in the hydrological year and with open canopies. At least one common species preferred circumneutral pH and several restricted-distribution species preferred lower pH (<5). Contrary to expectations, relationships between species occurrence and adjacent forest cover were negative. Our results suggest that current regulations that provide buffers of 30 m or less do not provide adequate protection of wetland water chemistry but that forest encroachment into wetlands may be a threat to the integrity of amphibian communities and should be the target of monitoring, future research, and management efforts. © 2021 The Wildlife Society.     

Field-based insights to the evolution of specialization: plasticity and fitness across habitats in a specialist/generalist species pair

Factors promoting the evolution of specialists versus generalists have been little studied in ecological context. In a large-scale comparative field experiment, we studied genotypes from naturally evolved populations of a closely related generalist/specialist species pair (Polygonum persicaria and P. hydropiper), reciprocally transplanting replicates of multiple lines into open and partially shaded sites where the species naturally co-occur. We measured relative fitness, individual plasticity, herbivory, and genetic variance expressed in the contrasting light habitats at both low and high densities. Fitness data confirmed that the putative specialist out-performed the generalist in only one environment, the favorable full sun/low-density environment to which it is largely restricted in nature, while the generalist had higher lifetime reproduction in both canopy and dense neighbor shade. The generalist, P. persicaria, also expressed greater adaptive plasticity for biomass allocation and leaf size in shaded conditions than the specialist. We found no evidence that the ecological specialization of P. hydropiper reflects either genetically based fitness trade-offs or maintenance costs of plasticity, two types of genetic constraint often invoked to prevent the evolution of broadly adaptive genotypes. However, the patterns of fitness variance and herbivore damage revealed how release from herbivory in a new range can cause an introduced species to evolve as a specialist in that range, a surprising finding with important implications for invasion biology. Patterns of fitness variance between and within sites are also consistent with a possible role for the process of mutation accumulation (in this case, mutations affecting shade-expressed phenotypes) in the evolution and/or maintenance of specialization in P. hydropiper.     

Designing Wetlands for Amphibians: The Importance of Predatory Fish and Shallow Littoral Zones in Structuring of Amphibian Communities

Under section 401 and section 404 of the Clean Water Act, permission to degrade existing natural wetlands in the USA may be conditional on restoring or creating ‘replacement’ wetlands. Success of wetland mitigation efforts in adequately replacing lost wildlife habitats depends on our good understanding of key ecological attributes that affect the structure of wetland faunal communities. We examined the effects of the presence of predatory fish, shallow vegetated littoral zone, emergent vegetation cover, wetland age and size on amphibian diversity in 42 replacement wetlands located in the Ohio’s North Central Tillplain ecoregion. We recorded 13 species of pond-breeding amphibians, and the average local species richness (α-richness) was 4.2 ± 1.7 species per site (range 1–7). There is strong evidence for the positive association between amphibian species richness and presence of a shallow littoral zone, and the negative association with presence of predatory fish. There was no evidence for the association between species richness and age, size, amount of forest cover within 200 m, nor the amount of emergent vegetation cover at the study sites. It is estimated that local species richness in wetlands with shallows was 1.76 species higher on average than in wetlands without shallows (95% CI from 0.75 to 2.76). The presence of predatory fish was associated with an average reduction in species richness by an estimated 1.21 species (95% CI from 0.29 to 2.11). Replacement wetlands were placed in areas with little or no existing forest cover, and amphibian species associated with forested wetlands were either rare (eastern newt, spotted salamander) or not present at all (marbled salamander, wood frog). In addition, we surveyed all replacement wetlands constructed under section 401 in Ohio since 1990, and found that predatory fish were present in 52.4% of the sites and that shallows were absent from 42.7% of the sites. Our results indicate that current wetland replacement practices could have a negative effect on the amphibian diversity within our region.     

The relationship between wetland hydroperiod and nestedness patterns in assemblages of larval amphibians and predatory macroinvertebrates

Assemblages exhibit nested distributional patterns if the species found in species-poor locations also occur in progressively richer locations. We investigated patterns of nestedness in assemblages of larval amphibians and predatory macroinvertebrates in 42 isolated freshwater wetlands in southern New Hampshire, USA. These wetlands varied markedly in hydroperiod and we predicted that nestedness would be relatively weak because changes in disturbance processes (the relative threat of desiccation and predation) along the hydroperiod gradient often generate distinct assemblages. Contrary to expectations we found that both amphibian and macroinvertebrate assemblages were strongly nested not only with respect to species richness but also with respect to hydroperiod and wetland size, which were positively correlated. We attribute our results to the increased colonization rates and decreased extinction rates associated with increasing hydroperiod, and to concomitant increases in wetland size, habitat heterogeneity/complexity, and possibly water temperature. Moreover, the impact of predatory fishes on species richness and composition of amphibians and macroinvertebrates was relatively minor. We found that amphibians had a significantly lower degree of nestedness than macroinvertebrates, suggesting that a higher proportion of amphibian species found in species-poor assemblages was unlikely to occur in species-rich assemblages of amphibians (e.g. wood frogs and spotted salamanders). The degree of nestedness appeared to be influenced primarily by hydroperiod and wetland size for amphibians, whereas nestedness of macroinvertebrates was influenced by unknown factors (possibly water temperature) in addition to hydroperiod and wetland size. The high degrees of nestedness observed in amphibian and macroinvertebrate assemblages imply that protection of larger, more permanent wetlands may be more important for conserving native biological diversity than protection of smaller, non-permanent wetlands. However, non-permanent wetlands are used by several species of conservation concern that often do not occur in larger and more permanent wetlands.     

Fish reduce anuran abundance and decrease herpetofaunal species richness in wetlands

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Habitat predictors of genetic diversity for two sympatric wetland‐breeding amphibian species

Population genetic diversity is widely accepted as important to the conservation and management of wildlife. However, habitat features may differentially affect evolutionary processes that facilitate population genetic diversity among sympatric species. We measured genetic diversity for two pond‐breeding amphibian species (Dwarf salamanders, Eurycea quadridigitata; and Southern Leopard frogs, Lithobates sphenocephalus) to understand how habitat characteristics and spatial scale affect genetic diversity across a landscape. Samples were collected from wetlands on a longleaf pine reserve in Georgia. We genotyped microsatellite loci for both species to assess population structures and determine which habitat features were most closely associated with observed heterozygosity and rarefied allelic richness. Both species exhibited significant population genetic structure; however, structure in Southern Leopard frogs was driven primarily by one outlier site. Dwarf salamander allelic richness was greater at sites with less surrounding road area within 0.5 km and more wetland area within 1.0 and 2.5 km, and heterozygosity was greater at sites with more wetland area within 0.5 km. In contrast, neither measure of Southern Leopard frog genetic diversity was associated with any habitat features at any scale we evaluated. Genetic diversity in the Dwarf salamander was strongly associated with land cover variables up to 2.5 km away from breeding wetlands, and/or results suggest that minimizing roads in wetland buffers may be beneficial to the maintenance of population genetic diversity. This study suggests that patterns of genetic differentiation and genetic diversity have associations with different habitat features across different spatial scales for two syntopic pond‐breeding amphibian species.     

Effects of beaver on the thermal biology of an amphibian

It is often assumed that ecological interactions happen at rapid rates relative to evolutionary change. In this study we examined the development and physiology of an amphibian ( Rana sylvatica ) from populations found in forested wetlands, and from wetlands that had been cleared by reinvading beaver ( Castor canadensis ). Embryos from beaver wetlands hatched at lower rates when raised in a shaded, common garden setting compared with embryos from forested wetlands. Larvae from beaver wetlands had higher critical thermal maxima compared with conspecifics from forested wetlands. These patterns suggest that R. sylvatica populations may have diverged rapidly (in less than 36 years) in response to changes in their environment induced by another species. Other agents of thermal change, such as anthropogenic landscape conversion or alteration of global climate, could have analogous impacts on wetland dependent species such as amphibians.     

Immune responsiveness in adult blue tits: heritability and effects of nutritional status during ontogeny

The vegetation in and around the basins of ephemeral wetlands can greatly affect light environments for aquatic species such as amphibians. We used hemispherical photographs to quantify the light environment in terms of the global site factor (GSF), the proportion of available solar radiation that actually strikes the wetland. We compared GSF to the distribution and performance of two amphibian species (Pseudacris crucifer and Rana sylvatica) within 17 ephemeral wetlands in northeastern Connecticut, USA. We found that P. crucifer is restricted to lighter wetlands (GSF >0.34) and that its abundance is proportional to GSF. By contrast, R. sylvatica is found across the light gradient and its abundance is unrelated to GSF. For both species, GSF is a strong predictor of larval developmental rate. In addition, P. crucifer growth rate is higher in lighter wetlands. Through thermal effects, changes in resources, or other influences, light appears to be an important predictor of the distribution and performance of amphibians. Because the structure of canopies can change rapidly, and because amphibians can be strongly impacted by these changes, vegetation mediated effects on wetland light environments may be critical to understanding the dynamics of amphibian populations within forested biomes.     

Amphibian and reptile communities of rainforest fragments: minimum patch size to support high richness and abundance

Information on animal communities inhabiting Neotropical fragmented landscapes is important for developing conservation strategies. The structure of amphibian and reptile communities in six tropical rainforest fragments (<20?ha) and two reference areas in continuous forest at Los Tuxtlas, Mexico was studied. A total of 3,481 individuals of 51 species of amphibians and reptiles were recorded across 12 bimonthly surveys during 2 years. Taxonomic composition was different between the smallest fragments and the reference areas. Six species were exclusive to large undisturbed forest and richness was significantly lower in the five smallest fragments (1.4–6.6?ha) compared with the largest patch, one or both of the reference areas. Amphibian abundance tended to be higher in large areas, while reptiles were more abundant in the five smallest fragments. Craugastor loki and Anolis uniformis were the dominant species in all sites, and particularly in the smaller fragments. Amphibian and reptile richness was positively related to larger patch sizes, deeper leaf litter, closed canopy cover, and higher relative humidity and negatively related to linear patch shape and high temperatures. Abundance of reptiles was positively associated to high temperatures, high density of woody debris, and closed canopy cover; it was negatively affected by linear patch shape, low humidity levels, and steeper slopes. While amphibian and reptile communities were strongly affected in vegetation fragments, these patches retained a considerable number of rainforest species. Fragments up to at least 17?ha have the potential for preserving communities with similar structure to those occurring in large tropical rainforests.     

Evidence for a possible extinction debt in Swiss wetland specialist plants

1. Habitat loss leading to smaller patch sizes and decreasing connectivity is a major threat to global biodiversity. While some species vanish immediately after a change in habitat conditions, others show delayed extinction, that is, an extinction debt. In case of an extinction debt, the current species richness is higher than expected under present habitat conditions.
2. We investigated wetlands of the canton of Zürich in the lowlands of Eastern Switzerland where a wetland loss of 90% over the last 150 years occurred. We related current species richness to current and past patch area and connectivity (in 1850, 1900, 1950, and 2000). We compared current with predicted species richness in wetlands with a substantial loss in patch area based on the species‐area relationship of wetlands without substantial loss in patch area and studied relationships between the richness of different species groups and current and historical area and connectivity of wetland patches.
3. We found evidence of a possible extinction debt for long‐lived wetland specialist vascular plants: in wetlands, which substantially lost patch area, current species richness of long‐lived specialist vascular plants was higher than would have been expected based on current patch area. Additionally and besides current wetland area, historical area also explained current species richness of these species in a substantial and significant way. No evidence for an extinction debt in bryophytes was found.
4. The possible unpaid extinction debt in the wetlands of the canton of Zürich is an appeal to nature conservation, which has the possibility to prevent likely future extinctions of species through specific conservation measures. In particular, a further reduction in wetlands must be prevented and restoration measures must be taken to increase the number of wetlands.

     

Microgeographic countergradient variation in the wood frog, Rana sylvatica

Prior studies have shown that macrogeographic gradients in temperature associated with latitude and altitude can lead to countergradient patterns of variation in a number of taxa: individuals from colder environments are known to grow or develop faster than their conspecifics from warmer environments when placed in a common setting. In this study, I hypothesized that countergradient variation also is important at microgeographic scales. The wood frog, Rana sylvatica, breeds in open-canopied, temporary wetlands as well as those heavily shaded by vegetation. Shading leads to cooler thermal environments that are associated with embryonic development rates as much as 50% slower than those in unshaded wetlands. Wetlands with contrasting canopy environments are often found within tens or hundreds of meters of each other. In a common garden experiment, embryos from nearby natural wetlands displayed countergradient variation: individuals collected from shaded wetlands developed up to 12% faster than those collected from relatively unshaded wetlands. The results of this study suggest that the concept of countergradient variation may be extended to small scales of space. In addition, the rate and scale of vegetation dynamics (the agent of wetland shading) imply that divergence in development among residents of nearby wetlands may be relatively rapid, on the order of decades.     

Incomplete recovery of plant diversity in restored prairie wetlands on agricultural landscapes

Restoration efforts are being implemented globally to mitigate the degradation and loss of wetland habitat; however, the rate and success of wetland vegetation recovery post‐restoration is highly variable across wetland classes and geographies. Here, we measured the recovery of plant diversity along a chronosequence of restored temporary and seasonal prairie wetlands ranging from 0 to 23 years since restoration, including drained and natural wetlands embedded in agricultural and natural reserve landscapes in central Alberta, Canada. We assessed plant diversity using the following structural indicators: percent cover of hydrophytes, native and non‐native species, species richness, and community composition. Our findings indicate that plant diversity recovered to resemble reference wetlands in agricultural landscapes within 3–5 years of restoration; however, restored wetlands maintained significantly lower species richness and a distinct community composition compared to reference wetlands located within natural reserves. Early establishment of non‐native species during recovery, dispersal limitation, and depauperated native seed bank were probable barriers to complete recovery. Determining the success of vegetation recovery provides important knowledge that can be used to improve restoration strategies, especially considering projected future changes in land use and climate.     

How Does Restoration of Native Canopy Affect Understory Vegetation Composition? Evidence from Riparian Communities of the Hunter Valley Australia

Restoration of native vegetation often focuses on the canopy layer species, with the assumption that regeneration of the understory elements will occur as a consequence. The goal of this study was to assess the influence of canopy restoration on the composition and abundance of understory plant species assemblages along riparian margins in the Hunter Valley, NSW, Australia. We compared the floristic composition (richness, abundance, and diversity) of understory species between nonrevegetated (open) and canopy revegetated plots across five sites. A number of other factors that may also influence understory vegetation, including soil nutrients, proximity to main channel, and light availability, were also measured. We found that sites where the canopy had been restored had lower exotic species richness and abundance, as well as higher native species cover, but not native species richness, compared with open sites. Multivariate analysis of plots based on plant community composition showed that revegetated sites were associated with lower total species diversity, light availability, and exotic cover. This study has found that the restoration of the canopy layer does result in lower exotic species richness and cover, and higher native species cover and diversity in the understory, a desirable restoration outcome. Our results provide evidence that restoration of native canopy species may facilitate restoration of native understory species; however, other interventions to increase native species richness of the understory should also be considered as part of management practice.     

Amphibian species richness across environmental gradients

Large‐scale field patterns are a fundamental source of inferences on processes responsible for variation in species richness among habitats. We examined species richness of larval amphibian communities in 37 ponds over seven years on the Univ. of Michigan's E. S. George Reserve. Ordination of the community incidence matrix indicated a strong major axis of variation in species associations that was correlated with pond hydroperiod, surface area and forest canopy cover. Communities were significantly nested with those species found in ponds with high canopy cover, small area and short hydroperiod being nested subsets of those found in ponds with contrasting characteristics. Presence of fish had strong negative effects on species richness; relaxation of this effect also was apparent when fish were extirpated from ponds by drought. We employed a model selection analysis to identify the most appropriate statistical model for predicting the long‐term average species richness of these ponds from local abiotic and biotic (predator and competitor density) factors. A model including only the abiotic factors was overwhelmingly superior for the anurans; hierarchical partitioning indicated that area and canopy cover alone accounted for over 70% of the independent effects of predictor variables. The global model including both abiotic and biotic factors was the best supported model for the caudates, and correspondingly hierarchical partitioning suggested that area, hydroperiod, invertebrate predators and caudate biomass all accounted for 9–16% of the independent effects. Overall, biotic factors accounted for much less of the variation in species richness than abiotic factors. The patterns in larger, open‐canopy ponds provided little evidence of competitive effects on species richness, though there were patterns consistent with competitive effects in small, closed‐canopy ponds. The unusual temporal and spatial extent of these data enabled us to critically evaluate ideas regarding patterns in larval amphibian communities, and the effects of area, disturbance (hydroperiod) and productivity (canopy cover) on species richness of these communities. These results have important implications to the conservation of amphibian species richness in freshwater wetlands, which are among the most threatened ecosystems worldwide.     

The Effects of Cropping Systems on Avian Communities in Cacao and Banana Agro‐Forestry Systems of Talamanca,Costa Rica

Multispecies agro‐forestry is generally lauded for providing ecosystem services, especially in tropical environments. Avian communities contribute to services such as biodiversity and pest management. Characterizing and evaluating avian community composition in similar cropping systems will help optimize management for ecosystem services. We examined the relationship between cropping system vegetation and avian communities in four shaded agro‐forestry systems common to the Limón province of Costa Rica: abandoned and managed systems of cacao, cacao with banana, and banana. During two field seasons, we detected 2605 birds from 106 species and identified 2791 trees and shrubs from 62 morphospecies. We compared vegetation and avian species richness across systems with mixed‐effects linear models. Canopy, understory, and groundcover vegetation differed among agro‐forestry systems. More ground‐ and understory‐foraging forest species were detected in agro‐forestry systems lacking banana, whereas richness of agricultural generalist species was highest in systems with banana. Richness of understory‐ and ground‐foraging species correlated with understory tree species richness and leaf litter. Our results indicate that shaded cacao and banana systems can have similar canopy‐foraging species richness that includes both agricultural and woodland generalist species, but that interspersing banana with cacao can adversely influence understory forest bird community composition. Agro‐forests with diverse understory vegetation support more understory‐foraging bird species that have proven valuable in pest management. Abstract in Spanish is available at http://www.blackwell‐synergy.com/loi/btp .