Carbon cycling in cultivated land and its global significance

Long-term data from Sanborn Field, one of the oldest experimental fields in the USA, were used to determine the direction of soil organic carbon (SOC) dynamics in cultivated land. Changes in agriculture in the last 50 years including introduction of more productive varieties, wide scale use of mineral fertilizers and reduced tillage caused increases in total net annual production (TNAP), yields and SOC content. TNAP of winter wheat more than doubled during the last century, rising from 2.0–2.5 to 5–6 Mg ha^–1 of carbon, TNAP of corn rose from 3–4 to 9.5–11.0 Mg ha^–1 of carbon. Amounts of carbon returned annually with crop residues increased even more drastically, from less than 1 Mg ha^–1 in the beginning of the century to 3–3.5 Mg ha^–1 for wheat and 5–6 Mg ha^–1 for corn in the 90s. These amounts increased in a higher proportion because in the early 50s removal of postharvest residues from the field was discontinued. SOC during the first half of the century, when carbon input was low, was mineralized at a high rate: 89 and 114 g m^–2 y^–1 under untreated wheat and corn, respectively. Application of manure decreased losses by half, but still the SOC balance remained negative. Since 1950, the direction of the carbon dynamics has reversed: soil under wheat monocrop (with mineral fertilizer) accumulated carbon at a rate about 50 g m^–2 y^–1, three year rotation (corn/wheat/clover) with manure and nitrogen applications sequestered 150 g m² y^–1 of carbon. Applying conservative estimates of carbon sequestration documented on Sanborn Field to the wheat and corn production area in the USA, suggests that carbon losses to the atmosphere from these soils were decreased by at least 32 Tg annually during the last 40–50 years. Our computations prove that cultivated soils under proper management exercise a positive influence in the current imbalance in the global carbon budget.     

根际沉积及其在植物-土壤碳循环中的作用

植物根际沉积是一种重要的植物与土壤交换的界面过程,在土壤碳周转方面具有重要的作用;根际碳的沉积也是联系植物、土壤及微生物的桥梁.本文就近年来关于根际沉积中碳平衡、碳循环等相关研究,阐述了根际碳沉积的机制,探讨了相关试验中存在的问题,以及不同植物品种、种类和生育期根际沉积的差异和根际沉积物与土壤呼吸的关系,指出了根际沉积在植物 土壤体系中碳循环的重要作用.在此基础上,提出了未来的研究领域及方向.     

Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters

Viruses play an important role in the ecology and biogeochemistry of marine ecosystems. Beyond mortality and gene transfer, viruses can reprogram microbial metabolism during infection by expressing auxiliary metabolic genes (AMGs) involved in photosynthesis, central carbon metabolism, and nutrient cycling. While previous studies have focused on AMG diversity in the sunlit and dark ocean, less is known about the role of viruses in shaping metabolic networks along redox gradients associated with marine oxygen minimum zones (OMZs). Here, we analyzed relatively quantitative viral metagenomic datasets that profiled the oxygen gradient across Eastern Tropical South Pacific (ETSP) OMZ waters, assessing whether OMZ viruses might impact nitrogen (N) cycling via AMGs. Identified viral genomes encoded six N-cycle AMGs associated with denitrification, nitrification, assimilatory nitrate reduction, and nitrite transport. The majority of these AMGs (80%) were identified in T4-like Myoviridae phages, predicted to infect Cyanobacteria and Proteobacteria, or in unclassified archaeal viruses predicted to infect Thaumarchaeota. Four AMGs were exclusive to anoxic waters and had distributions that paralleled homologous microbial genes. Together, these findings suggest viruses modulate N-cycling processes within the ETSP OMZ and may contribute to nitrogen loss throughout the global oceans thus providing a baseline for their inclusion in the ecosystem and geochemical models.Subject terms: Virus-host interactions, Biogeochemistry, Microbial biooceanography, Microbial ecology     

碳同位素示踪技术及其在陆地生态系统碳循环研究中的应用与展望

碳同位素示踪技术具有高度的专一性和灵敏度, 经过几十年的发展, 形成了一系列成熟的标记方法, 在陆地生态系统碳循环过程的研究中已得到广泛应用。目前, 自然丰度法、与¹³C贫化示踪技术结合的自由空气中气体浓度增加(FACE)实验、脉冲与连续标记法以及碳同位素高丰度底物富集标记法是研究陆地生态系统碳循环过程常用的碳同位素示踪方法; 通过将长期定位实验和室内模拟实验结合, 量化光合碳在植物-土壤系统的传输与分配特征, 明确植物光合碳对土壤有机质的来源、稳定化过程的影响及其微生物驱动机制; 阐明土壤碳动态变化(迁移与转化)和新碳与老碳对土壤碳库储量的相对贡献, 评估有机碳输入、转化与稳定的生物与非生物微观界面过程机制。然而, 生态系统碳循环受气候、植被、人为活动等多因素影响, 碳同位素技术需要结合质谱、光谱技术实现原位示踪, 结合分子生物学技术阐明其微生物驱动机制, 从而构建灵敏、准确、多尺度、多方位的同位素示踪技术体系。因此, 该文以稳定碳同位素为主, 综述了碳同位素示踪技术的原理、分析方法和在陆地生态系统碳循环过程中的应用进展, 归纳总结了碳同位素示踪技术结合原位检测技术和分子生物学技术的研究进展和应用前景, 并对碳同位素示踪技术存在的问题进行了分析和展望。     

Decadal cycling within long-lived carbon pools revealed by dual isotopic analysis of mineral-associated soil organic matter

Long-lived soil organic matter (SOM) pools are critical for the global carbon (C) cycle, but challenges in isolating such pools have inhibited understanding of their dynamics. We physically isolated particulate (>53 μm), silt-, and clay-sized organic matter from soils collected over two decades from a perennial C₃ grassland established on long-term agricultural soil with a predominantly C₄ isotopic signature. Silt- and clay-sized fractions were then subjected to a sequential chemical fractionation (acid hydrolysis followed by peroxide oxidation) to isolate long-lived C pools. We quantified ¹⁴C and the natural ¹³C isotopic label in the resulting fractions to identify and evaluate pools responsible for long-lived SOM. After removal of particulate organic matter (~14% of bulk soil C) sequential chemical treatment removed 80% of mineral-associated C. In all mineral-associated fractions, at least 55% of C₄-derived C was retained 32 years after the switch to C₃ inputs. However, C₃–C increased substantially beginning ~25 years after the switch. Radiocarbon-based turnover times ranged from roughly 1200–3000 years for chemically resistant mineral-associated pools, although some pools turned over faster under C₃ grassland than in a reference agricultural field, indicating that new material had entered some pools as early as 14 years after the vegetation switch. These findings provide further evidence that SOM chemistry does not always reflect SOM longevity and resistance to microbial decomposition. Even measureable SOM fractions that have extremely long mean turnover times (>1500 years) can have a substantial component that is dynamic over much shorter timescales.     

Anaerobic mineralization of marine sediment organic matter: Rates and the role of anaerobic processes in the oceanic carbon economy

Abstract

This paper addresses three related questions: (1) What factors control the efficiency of carbon burial in sediments? (2) Are rates of anaerobic organic matter degradation intrinsically lower than aerobic rates? (3) How important are anaerobic processes in the global marine sediment carbon economy?

Carbon burial efficiency (the ratio of the carbon burial rate and the carbon flux to the sediment surface) was estimated from literature data for a range of environments and was shown to be a function of sedimentation rate. No difference independent of sedimentation rate was found between aerobic and anaerobic sediments.

A review of recent microcosm and laboratory studies shows that anaerobic rates are not intrinsically lower than aerobic rates; fresh organic matter degrades at similar rates under oxic and anoxic conditions. Aerobic decomposition rates near the sediment surface are typically greater than anaerobic rates at depth because the most labile carbon is consumed before it can be buried in the anoxic zone.

A model approach was taken in estimating the importance of anaerobic processes in the global marine sediment economy, instead of extrapolating measured rates as done previously. The result, 150 Tg C yr^?1, is two to nine times lower than previous estimates. This rate is about 9% of the global aerobic carbon oxidation rate and is about equal to the rate of long‐term carbon burial. The importance of anaerobic processes in marine sediments lies in their role in determining the amount of carbon preserved, not in the amount of carbon remineralized overall.     

Phosphorus control of soil organic matter accumulation and cycling

The present level of understanding of P controls on organic matter accumulation and cycling in a pedological context owes much to soil sequence studies, and the hypotheses that emerged from them to explain the variation of P compounds with soil type and development. It is now widely accepted that nutrient transformations in soil are closely linked through a more dynamic biological cycle in which microorganisms have a central role. Concepts developed to account for the effects of P on N cycling, and for interpreting inter-relationships of C, N, P and S in both a pedological and biological context have yet to be tested adequately across different ecosystems. These concepts are discussed, in relation to some recent supporting evidence.     

Paradigm shifts in soil organic matter research affect interpretations of aquatic carbon cycling: transcending disciplinary and ecosystem boundaries

New conceptual models that highlight the importance of environmental, rather than molecular, controls on soil organic matter affect interpretations of organic matter (OM) persistence across terrestrial and aquatic boundaries. We propose that changing paradigms in our thinking about OM decomposition explain some of the uncertainties surrounding the fate of land-derived carbon (C) in marine environments. Terrestrial OM, which historically has been thought to be chemically recalcitrant to decay in soil and aquatic environments, dominates inputs to rivers yet is found in trace amounts in the ocean. We discuss three major transformations in our understanding of OM persistence that influence interpretations of the fate of aquatic OM: (1) a shift away from an emphasis on chemical recalcitrance as a primary predictor of turnover; (2) new interpretations of radiocarbon ages, which affect predictions of reactivity; and (3) the recognition that most OM leaving soils in dissolved form has been microbially processed. The first two explain rapid turnover for terrigenous OM in aquatic ecosystems once it leaves the soil matrix. The third suggests that the presence of terrestrial OM in aquatic ecosystems may be underestimated by the use of plant biomarkers. Whether these mechanisms occur in isolation of each other or in combination, they provide insight into the missing terrestrial C signature in the ocean. Spatially and temporally varying transformations of OM along land–water networks require that common terrestrial source indicators be interpreted within specific environmental contexts. We identify areas of research where collaborations between aquatic and terrestrial scientists will enhance quantification of C transfer from soils to inland water bodies, the ocean, and the atmosphere. Accurate estimates of OM processing are essential for improving predictions of the response of vulnerable C pools at the interface of soil and water to changes in climate and land use.     

Mechanical coupling of upper and lower canine rib cages and its functional significance

We studied rib cage distortability and reexamined the mechanical action of the diaphragm and the rib cage muscles in six supine anesthetized dogs by measuring changes in upper rib cage cross-sectional area (Aurc) and changes in lower rib cage cross-sectional area (Alrc) and the respective pressures acting on them. During quiet breathing in the intact animal the rib cage behaved as a unit (Aurc: 14.6 +/- 7.9 vs. Alrc: 15.1 +/- 9.6%), whereas considerable distortions of the rib cage occurred during breathing after bilateral phrenicotomy (Aurc: 21.0 +/- 5.1 vs. Alrc: 7.0 +/- 4.8%). These distortions were even more pronounced during phrenic nerve stimulation and separate stimulation of the costal and crural parts of the diaphragm (e.g., phrenic nerve stimulation; Aurc: -7.1 +/- 5.1 vs. Alrc: 6.9 +/- 3.5%). During the latter maneuvers the upper rib cage deflated along the relationship between upper rib cage dimensions and pleural pressure obtained during passive deflation, whereas the lower rib cage inflated close to the relationship between lower rib cage dimensions and abdominal pressure obtained during passive inflation. The latter relationship is expected to differ between costal and crural stimulation, since costal action has both an appositional and insertional component and crural action only has an appositional component. The difference between costal and crural stimulation, however, was relatively small, and the slopes were only slightly steeper for the costal than for the crural stimulation (2.9 +/- 1.2 vs. 2.2 +/- 1.0%.(ABSTRACT TRUNCATED AT 250 WORDS)     

Effect of catchment characteristics on aquatic carbon export from a boreal catchment and its importance in regional carbon cycling

Inland waters transport and emit into the atmosphere large amounts of carbon (C), which originates from terrestrial ecosystems. The effect of land cover and land‐use practises on C export from terrestrial ecosystems to inland waters is not fully understood, especially in heterogeneous landscapes under human influence. We sampled for dissolved C species in five tributaries with well‐determined subcatchments (total size 174.5 km²), as well as in various points of two of the subcatchments draining to a boreal lake in southern Finland over a full year. Our aim was to find out how land cover and land‐use affect C export from the catchments, as well as CH₄ and CO₂ concentrations of the streams, and if the origin of C in stream water can be determined from proxies for quality of dissolved organic matter (DOM). We further estimated the gas evasion from stream surfaces and the role of aquatic fluxes in regional C cycling. The export rate of C from the terrestrial system through an aquatic conduit was 19.3 g C m^?2(catchment) yr^?1, which corresponds to 19% of the estimated terrestrial net ecosystem exchange of the catchment. Most of the C load to the recipient lake consisted of dissolved organic carbon (DOC, 6.1 ± 1.0 g C m^?2 yr^?1); the share of dissolved inorganic carbon (DIC) was much smaller (1.0 ± 0.2 g C m^?2 yr^?1). CO₂ and CH₄ emissions from stream and ditch surfaces were 7.0 ± 2.4 g C m^?2 yr^?1 and 0.1 ± 0.04 g C m^?2 yr^?1, respectively, C emissions being thus equal with C load to the lake. The proportion of peatland in the catchment and the drainage density of peatland increased DOC in streams, whereas the proportion of agricultural land in the catchment decreased it. The opposite was true for DIC. Drained peatlands were an important CH₄ source for streams.     

陆地碳循环研究中的模型方法

陆地碳循环是全球变化研究中的重要内容,碳循环模型已成为研究陆地碳循环的必要方法．其中气候变化、大气ＣＯ２浓度上升以及人类活动引起的土地利用和土地覆盖变化导致陆地生态系统在结构、功能、组成和分布等方面的变化及其反馈关系对陆地碳循环的影响是模型模拟的关键问题．生物地理模型和生物地球化学模型是碳循环模型的两大类型,建模方法、模型性质、特点和应用范围各异．碳循环模型的发展方向是综合两类模型的特点,建立全球动态碳循环模型．     

Ectomycorrhizal fungi slow soil carbon cycling

Respiration of soil organic carbon is one of the largest fluxes of CO₂ on earth. Understanding the processes that regulate soil respiration is critical for predicting future climate. Recent work has suggested that soil carbon respiration may be reduced by competition for nitrogen between symbiotic ectomycorrhizal fungi that associate with plant roots and free‐living microbial decomposers, which is consistent with increased soil carbon storage in ectomycorrhizal ecosystems globally. However, experimental tests of the mycorrhizal competition hypothesis are lacking. Here we show that ectomycorrhizal roots and hyphae decrease soil carbon respiration rates by up to 67% under field conditions in two separate field exclusion experiments, and this likely occurs via competition for soil nitrogen, an effect larger than 2 °C soil warming. These findings support mycorrhizal competition for nitrogen as an independent driver of soil carbon balance and demonstrate the need to understand microbial community interactions to predict ecosystem feedbacks to global climate.     

Decadally cycling soil carbon is more sensitive to warming than faster‐cycling soil carbon

The response of soil organic carbon (SOC) pools to globally rising surface temperature crucially determines the feedback between climate change and the global carbon cycle. However, there is a lack of studies investigating the temperature sensitivity of decomposition for decadally cycling SOC which is the main component of total soil carbon stock and the most relevant to global change. We tackled this issue using two decadally ¹³C‐labeled soils and a much improved measuring system in a long‐term incubation experiment. Results indicated that the temperature sensitivity of decomposition for decadally cycling SOC (>23 years in one soil and >55 years in the other soil) was significantly greater than that for faster‐cycling SOC (<23 or 55 years) or for the entire SOC stock. Moreover, decadally cycling SOC contributed substantially (35–59%) to the total CO₂ loss during the 360‐day incubation. Overall, these results indicate that the decomposition of decadally cycling SOC is highly sensitive to temperature change, which will likely make this large SOC stock vulnerable to loss by global warming in the 21st century and beyond.     

Electron transfer of dissolved organic matter and its potential significance for anaerobic respiration in a northern bog

We investigated electron transfer processes of dissolved organic matter (DOM) and their potential importance for anaerobic heterotrophic respiration in a northern peatland. Electron accepting and donating capacities (EAC, EDC) of DOM were quantified using dissolved H₂S and ferric iron as reactants. Carbon turnover rates were obtained from porewater profiles (CO₂, CH₄) and inverse modeling. Carbon dioxide was released at rates of 0.2–5.9 mmol m⁻² day⁻¹ below the water table. Methane (CH₄) formation contributed <10%, and oxygen consumption 2% to 40%, leaving a major fraction of CO₂ production unexplained. DOM oxidized H₂S to thiosulfate and was reduced by dissolved ferric iron. Reduction with H₂S increased the subsequently determined EDC compared to untreated controls, indicating a reversibility of the electron transfer. In situ redox capacities of DOM ranged from 0.2 to 6.1 mEq g⁻¹ C (EAC) and from 0.0 to 1.4 mEq g⁻¹ C (EDC), respectively. EAC generally decreased with depth and changed after a water table drawdown and rebound by 20 and −45 mEq m⁻², respectively. The change in EAC during the water table fluctuation was similar to CH₄ formation rates. In peatlands, electron transfer of DOM may thus significantly contribute to the oxidation of reduced organic substrates by anaerobic heterotrophic respiration, or by maintaining the respiratory activity of sulfate reducers via provision of thiosulfate. Part of the anaerobic electron flow in peat soils is thus potentially diverted from methanogenesis, decreasing its contribution to the total carbon emitted to the atmosphere.     

Iron cycling at corroding carbon steel surfaces

Surfaces of carbon steel (CS) exposed to mixed cultures of iron-oxidizing bacteria (FeOB) and dissimilatory iron-reducing bacteria (FeRB) in seawater media under aerobic conditions were rougher than surfaces of CS exposed to pure cultures of either type of microorganism. The roughened surface, demonstrated by profilometry, is an indication of loss of metal from the surface. In the presence of CS, aerobically grown FeOB produced tight, twisted helical stalks encrusted with iron oxides. When CS was exposed anaerobically in the presence of FeRB, some surface oxides were removed. However, when the same FeOB and FeRB were grown together in an aerobic medium, FeOB stalks were less encrusted with iron oxides and appeared less tightly coiled. These observations suggest that iron oxides on the stalks were reduced and solubilized by the FeRB. Roughened surfaces of CS and denuded stalks were replicated with culture combinations of different species of FeOB and FeRB under three experimental conditions. Measurements of electrochemical polarization resistance established different rates of corrosion of CS in aerobic and anaerobic media, but could not differentiate rate differences between sterile controls and inoculated exposures for a given bulk concentration of dissolved oxygen. Similarly, total iron in the electrolyte could not be used to differentiate treatments. The experiments demonstrate the potential for iron cycling (oxidation and reduction) on corroding CS in aerobic seawater media.     

Role of lakes for organic carbon cycling in the boreal zone

We calculated the carbon loss (mineralization plus sedimentation) and net CO₂ escape to the atmosphere for 79 536 lakes and total running water in 21 major Scandinavian catchments (size range 437–48 263 km²). Between 30% and 80% of the total organic carbon that entered the freshwater ecosystems was lost in lakes. Mineralization in lakes and subsequent CO₂ emission to the atmosphere was by far the most important carbon loss process. The withdrawal capacity of lakes on the catchment scale was closely correlated to the mean residence time of surface water in the catchment, and to some extent to the annual mean temperature represented by latitude. This result implies that variation of the hydrology can be a more important determinant of CO₂ emission from lakes than temperature fluctuations. Mineralization of terrestrially derived organic carbon in lakes is an important regulator of organic carbon export to the sea and may affect the net exchange of CO₂ between the atmosphere and the boreal landscape.     

Microbial carbon limitation: The need for integrating microorganisms into our understanding of ecosystem carbon cycling

Numerous studies have demonstrated that fertilization with nutrients such as nitrogen, phosphorus, and potassium increases plant productivity in both natural and managed ecosystems, demonstrating that primary productivity is nutrient limited in most terrestrial ecosystems. In contrast, it has been demonstrated that heterotrophic microbial communities in soil are primarily limited by organic carbon or energy. While this concept of contrasting limitations, that is, microbial carbon and plant nutrient limitation, is based on strong evidence that we review in this paper, it is often ignored in discussions of ecosystem response to global environment changes. The plant‐centric perspective has equated plant nutrient limitations with those of whole ecosystems, thereby ignoring the important role of the heterotrophs responsible for soil decomposition in driving ecosystem carbon storage. To truly integrate carbon and nutrient cycles in ecosystem science, we must account for the fact that while plant productivity may be nutrient limited, the secondary productivity by heterotrophic communities is inherently carbon limited. Ecosystem carbon cycling integrates the independent physiological responses of its individual components, as well as tightly coupled exchanges between autotrophs and heterotrophs. To the extent that the interacting autotrophic and heterotrophic processes are controlled by organisms that are limited by nutrient versus carbon accessibility, respectively, we propose that ecosystems by definition cannot be ‘limited’ by nutrients or carbon alone. Here, we outline how models aimed at predicting non‐steady state ecosystem responses over time can benefit from dissecting ecosystems into the organismal components and their inherent limitations to better represent plant–microbe interactions in coupled carbon and nutrient models.