Genetic,phenotypic, and environmental correlations in black medic,Medicago lupulina L., grown in three different environments

We have investigated the relationship between phenotypic and genetic correlations among a large number of quantitative traits (36) in three different environments in order to determine their degree of disparity and whether phenotypic correlations could be substituted for their genetic counterparts whatever the environment. We also studied the influence of the environment on genetic and phenotypic correlations. Twenty accessions (full-sib families) ofMedicago luPulina were grown in three environments. In two of these two levels of environmental stress were generated by harvesting plants at flowering and by growing plants in competition with barley, respectively. A third environment, with no treatment, was used as a control with no stress. Average values of pod and shoot weight indicate that competition induces the highest level of stress. The genetic and phenotypic correlations among the 36 traits were compared. Significant phenotypic correlations were obtained easily, while there was no genetic variation for 1 or the 2 characters being correlated. The large positive correlation between the genetic and phenotypic correlation matrices indicated a good proportionality between genetic and phenotypic correlations matrices but not their similarity. In a given environment, when only those traits with a significant genetic variance were taken into account, there were still differences between genetic and phenotypic correlations, even when levels of significance for phenotypic correlations were lowered. Consequently, it is dangerous to substitute phenotypic correlations for genetic correlations. The number of traits that showed genetic variability increased with increasing environmental stress, consequently the number of significant genetic correlations also increased with increasing environmental stress. In contrast, the number of significant phenotypic correlations was not influnced by the environment. The structures of both phenotypic and genetic matrices, however, depended on the environment, and not in the same way for both matrices.     

Salt tolerance in Lycopersicon species. II. Genetic effects and a search for associated traits

Eleven quantitative traits, mostly related to tomato plant growth and fruit set, and their association with salt tolerance in terms of fruit yield under a 171.1 mM NaCl treatment have been investigated in 206 progeny derived from an interspecific hybrid, L. esculentum x L. pimpinellifolium, by self-pollination. None of the traits were highly correlated phenotypically to salt tolerance; however, the immunologically-detected presence of peptide 2 was significantly associated with high total fruit weight (TW) and number (FN) under saline treatment. Broad-sense heritability was estimated for these two salt-tolerance components as 53.44 and 72.59 %, respectively. Non-additive gene effects, which have to be considered in a breeding program for salt tolerance, have been detected in TW, FN and in average fruit weight (FW). Given that different types of gene action have been found depending on the presence or absence of a high NaCl concentration in the nutrient solution, a different set of genes, or genes, differently regulated, must be involved in the expression of TW, FN and other fruit-related characters depending on this environmental condition.     

Genetic control of androgenetic response in Lolium perenne L.

In a study of androgenesis in 90 Norwegian genotypes of perennial ryegrass (Lolium perenne L.), heritabilities ranged from h _b ² =0.46 to 0.80. Very high or completely positive genotypic correlations were found between most characters of androgenetic response (e.g. embryo-like structures per 100 anthers, plants per 100 embryo-like structures, albino plants per 100 anthers, green plants per 100 anthers). Three genotypes, 2 Norwegian (7-5 and 9-5) and 1 Danish (245), which had significantly different androgenetic responses were selected to study the genetic control of the processes. Genotypes 7-5 and 9-5 were highly embryogenie, 7–5 and 245 were relatively high producers of green plants, while 9-5 was unable to produce green plants. The six possible reciprocal crosses between these three genotypes were made, and 10 or 11 F₁ plants from each cross were used for anther culture experiments. The cross 7-5 x 245 showed average superiority over both parents for total plant regeneration and green plant production, results not previously reported. The phenotypic correlations estimated among progenies from the crosses ranged from r=-0.99^*** to 0.81^***. These considerable changes, relative to the results of the screening experiment, are most likely the result of changed allele frequencies caused by the strong selection of parents in these crosses, and a relatively simple genetical control. This is also inferred from the large transgressive segregation observed.Abbreviations ANT anthers - ELS embryo-like structures - ALB albino plants - GRP green plants - DH doubled haploid plants     

Correlated pedigree and molecular estimates of inbreeding and their ability to detect inbreeding depression in the Icelandic sheepdog, a recently bottlenecked population of domestic dogs

We examine the relationship of the inbreeding coefficient (f) and molecular estimates of inbreeding (IR, sMLH) in the Icelandic sheepdog. The breed experienced a severe genetic bottleneck and near extinction in the last century. Molecular estimates and the inbreeding coefficient are significantly correlated despite the moderate number of markers and individuals used in this study. This is most likely an effect of the extreme relatedness and relatively high variance in individual inbreeding coefficients in the population. There is a significant relationship between inbreeding (f) and the occurrence of hip dysplasia. However, the molecular measures did not detect hip dysplasia as an inbreeding effect.     

Genetic relationships between growth characters in Salix viminalis grown in Sweden

From an eight by eight factorial crossing with Salix viminalis, 40 of the 64 families obtained were selected for further analysis. Fourteen seedplants from each of these 40 families were planted in two pairs of contrasting environments: sand and clay soil, and low and high nutrient supply. The material in the soil contrast was harvested after 1, 4 and 6 years of growth. The material in the nutrient contrast was harvested each year for 3 years and analysed after the first and the third harvests. The correlation between number of shoots and weight in the clay environment changed from being negative in the first harvests to positive at the last harvest, compared with the sand environment where this correlation was positive in all years. In the nutrient contrast this correlation was positive at the last harvest in the high nutrient environment, but no correlation could be detected in the low nutrient environment. The differences in correlations between environments may be due to a different allocation of nutrients in the plants, depending on whether the plant is under stress or not. The data suggests that the genetic relationship between growth components is the same over age and environments when the plants are grown without stress.     

Influences of testing sites on the genetic correlations in open-pollinated family trials of Pinus elliottii in South Africa

Summary Two series of open-pollinated family trials of Pinus elliottii, the so-called foreign selection series and the Zululand selection series were repeated, respectively, on four and three sites situated in sub-tropical and cooler-temperate climates of the summer rainfall and constant rainfall areas of South Africa. These series were studied in order to determine how testing sites influence the genetic correlations between traits commonly measured in progeny trials. No trend was detected between site index and genetic correlation, but site drastically changed the size and sign of the genetic correlations between growth traits and stem form. Even the genetic correlation between height and diameter at breast height was strongly affected by site.     

Size Effects on Correlation Measures

The detection and quantification of long-range correlations in time series is a fundamental tool to characterize the properties of different dynamical systems, and is applied in many different fields, including physics, biology or engineering. Due to the diversity of applications, many techniques for measuring correlations have been designed. Here, we study systematically the influence of the length of a time series on the results obtained from several techniques commonly used to detect and quantify long-range correlations: the autocorrelation analysis, Hursts analysis, and detrended fluctuation analysis (DFA). Using the Fourier filtering method, we generate artificial time series with known and controlled long-range correlations and with a broad range of lengths, and apply on them the different correlation measures we have studied. Our results indicate that while the DFA method is practically unaffected by the length of the time series, and almost always provides accurate results, the results from Hursts analysis and the autocorrelation analysis strongly depend on the length of the time series.     

Phenotypic plasticity in Phlox

Summary Three species of Phlox (Polemoniaceae) were grown in 6 greenhouse treatments. A variety of traits were recorded and the correlations among them were computed for each treatment. The phenotypic correlations between characters are significantly altered when plants are grown under different environmental conditions. These changes in correlation structure result from the differential phenotypic plasticity of traits. Partial correlations between flower production and other traits are also environment-dependent. Such changes can alter the intensity of, and possibly the response to, selection on traits correlated with fitness in natural plant populations.     

Clinical and molecular analysis of common MEFV gene mutations in familial Mediterranean fever in Sivas population

Familial Mediterranean fever (FMF) is the most frequent hereditary inflammatory disease characterized by self-limited recurrent attacks of fever and serositis. The aim of the current study is to determine the frequency of the mutations in 365 suspected FMF patients and to reveal whether there is a correlation between genotype and phenotype of these patients. All patients were clinically examined according to Tell-Hashomer FMF criteria and were screened genetically in terms of common 12 Mediterranean fever gene (MEFV) mutations. Various point mutations were detected in 270 (74%) patients. The most frequent mutation was M694V (26.85% of the alleles) and was followed by E148Q (15.55%), M680I (G/C) (9.62%) and V726A (7.96%). Patients who bear M694V homozygous mutation had most severe disease phenotype and high risk for amyloidosis (P = 0.04). Our results indicate that Sivas population has a wide range of heterozygous mutated carriers of MEFV gene and there is a high frequency of E148Q allele when compared to the other Mediterranean groups.     

THE EVOLUTION OF GENETIC CORRELATIONS: AN ANALYSIS OF PATTERNS

The genetic correlation is a central parameter of quantitative genetics, providing a measure of the rate at which traits respond to indirect selection (i.e., selection that does not act upon the traits under study, but some other trait with which they have genes in common). In this paper, I review the pattern of variation among four combinations of traits: life history × life history (L × L), morphological × morphological (M × M), life history × morphological (L × M), and behavioral × behavioral (B × B). A few other combinations were investigated, but insufficient data were obtained for separate analysis. A total of 1798 correlations, distributed over 51 different animal and plant species, were analyzed. The analysis was conducted at two levels: first by dividing the data set solely by trait combination, and second by blocking the data by trait combination and species. Because selection will tend to fix alleles that show positive correlations with fitness traits faster than those that are negative and because the latter are expected to arise more frequently by mutation, correlations between life-history traits are predicted to be more often negative than those between morphological traits. This prediction was supported, with the ranking in decreasing proportion of negative correlations being: L × L > L × M > B × B > M × M. The mean magnitude of the genetic correlation shows little variation among morphological and life-history combinations, and the distribution of values is remarkably flat. However, the estimated standard errors and the coefficient of variation (SE/r_G) are large, making it difficult to separate biological factors influencing the pattern of dispersion from experimental error. Analysis of the phenotypic and genetic correlations suggest that for the combinations M × M and L × M, but not L × L or B × B, the phenotypic correlation is an adequate estimate of the genetic correlation.     

Variability and correlations in muskmelon in relation to the cultivation method

Summary Six fruit characters have been measured in 23 cultivars of Cucumis melo, representing a wide geographical range. Plants were grown both in the greenhouse and in the field. When the 23 cultivars were analyzed together, the largest component of variance was found between cultivars under both growth conditions, suggesting the existence of large genetic diversity for all the characters studied. Generally, variance between plants within cultivars was less than or equal to variance between fruits within plant. This indicates that environmental variation is the most important part of the variation within cultivars. Correlations between pairs of characters at cultivar, plant and fruit levels were calculated from the variance-covariance components. In the majority of paired traits, the correlation values indicated that genetic and environmental factors may act in the same direction.     

Middle to Late Holocene vegetation history of the Upper Engadine (Swiss Alps): the role of man and fire

To reconstruct the vegetation and fire history of the Upper Engadine, two continuous sediment cores from Lej da Champfèr and Lej da San Murezzan (Upper Engadine Valley, southeastern Switzerland) were analysed for pollen, plant macrofossils, charcoal and kerogen. The chronologies of the cores are based on 38 radiocarbon dates. Pollen and macrofossil data suggest a rapid afforestation with Betula, Pinus sylvestris, Pinus cembra, and Larix decidua after the retreat of the glaciers from the lake catchments 11,000 cal years ago. This vegetation type persisted until ca. 7300 cal b.p. (5350 b.c.) when Picea replaced Pinus cembra. Pollen indicative of human impact suggests that in this high-mountain region of the central Alps strong anthropogenic activities began during the Early Bronze Age (3900 cal b.p., 1950 b.c.). Local human settlements led to vegetational changes, promoting the expansion of Larix decidua and Alnus viridis. In the case of Larix, continuing land use and especially grazing after fire led to the formation of Larix meadows. The expansion of Alnus viridis was directly induced by fire, as evidenced by time-series analysis. Subsequently, the process of forest conversion into open landscapes continued for millennia and reached its maximum at the end of the Middle Ages at around 500 cal b.p. (a.d. 1450).     

Relationships between amino acid sequence and backbone torsion angle preferences

Statistical averages and correlations for backbone torsion angles of chymotrypsin inhibitor 2 are calculated by using the Rotational Isomeric States model of chain statistics. Statistical weights of torsional states of phipsi pairs, needed for the statistics of the full chain, are obtained in two different ways: 1) by using knowledge-based pairwise dependent phipsi energy maps from Protein Data Bank (PDB) and 2) by collecting torsion angle data from a large number of random coil configurations of an all-atom protein model with volume exclusion. Results obtained by using PDB data show strong correlations between adjacent torsion angle pairs belonging to both the same and different residues. These correlations favor the choice of the native-state torsion angles, and they are strongly context dependent, determined by the specific amino acid sequence of the protein. Excluded volume or steric clashes, only, do not introduce context-dependent phipsi correlations into the chain that would affect the choice of native-state torsional angles.     

Lead distribution in corn seedlings (Zea mays L.) and its effect on growth and the concentrations of potassium and calcium

It was observed that dry weight yield is not a sensitive parameter withwhich to assess lead toxicity to plants. Elongation growth of corn seedlingroots was more sensitive to lead than shoot growth and was inhibited by allconcentrations tested (10^–5, 10^–4, and 10^–3 M).It was positively correlated with potassium concentration and negativelycorrelated with lead concentration in the roots. Negative correlation also wasobserved between lead concentration and potassium concentration in roots. It ispostulated that inhibition of corn root growth is connected with potassiumleakage from root cells. The toxic action of lead on corn seedling mesocotylandcoleoptile growth was not correlated with potassium concentration in planttissue and correlation between growth and lead concentration was low. Inseedlings treated with 10^–4 and 10^–3 M lead the growthof mesocotyl and coleoptile was affected similarly, although the concentrationof lead was threefold higher in mesocotyl tissue than in coleoptile tissue. It isproposed that depression of corn seedlings shoot growth is not an effect ofpotassium leakage or lead accumulation but of an unknown signal induced inroots, as a response to exposure to lead, which is transmitted to shoots. Thepositive correlation between lead and calcium concentrations found in seedlingroots might be connected with high constitutional tolerance of corn to lead.Since the first 8 mm of an apical root accounts for 50% of thelead accumulated by the whole root, it is postulated that rhizofiltration oflead contaminated waters should be more efficient when plant species withhighly branched root systems are used.     

The effect of wild radish floral morphology on pollination efficiency by four taxa of pollinators

The effects of floral morphology on rates of pollen removal and deposition by different pollinators in generalist plant species are not well known. We studied pollination dynamics in wild radish, Raphanus raphanistrum, a plant visited by four groups of pollinators: honey bees, small native bees, butterflies, and syrphyd flies. The effects of anther position and other factors on pollen removal during single visits by all four pollinator taxa were measured. Flowers with high anther exsertion (i.e., anthers placed higher above the opening of the corolla tube) tended to have the highest numbers of pollen grains removed, but this effect was strongest for honey bees and butterflies. For all pollinator taxa, pollen removal increased with the number of pollen grains available on a flower and whowed a positive, decelerating relationship with the duration of the visit. The effects of stigma position and other factors on pollen deposition during single visits by honey bees and butterflies were also studied. The nectar-feeding butterflies had a higher pollination efficiency (percentage of pollen grains removed from anthers that were subsequently deposited on a stigma) than the nectar- and pollen-feeding honey bees. Flowers with intermediate stigma exsertion had the highest numbers of pollen grains deposited on their stigmas by butterflies, but stigma exsertion had no effect on deposition by honey bees. For both butterflies and honey bees, pollen deposition on the recipient flower increased with the amount of pollen removed from the donor flower, and there was a positive, decelerating relationship between deposition and time spent at the flower; these results are analogous to those for pollen removal. The effects of anther and stigma exsertion on pollen removal and denosition did not fit predictions based on patterns of floral correlations, but results for morphology, pollen availability, time spent per visit, and pollinator efficiency are in broad agreement with previous studies, suggesting the possible emergence of some general rules of pollen transfer.     

Effect of lactation length adjustment procedures on genetic parameter estimates for buffalo milk yield

The objectives of this study were to estimate the genetic parameters for milk yield unadjusted and adjusted for days in milk and, subsequently, to assess the influence of adjusting for days in milk on sire rank. Complete lactations from 90 or 150 days of lactation to 270 or 350 days in milk were considered in these analyses. Milk yield was adjusted for days in milk by multiplicative correction factors, or by including lactation length as a covariable in the model. Milk yields adjusted by different procedures were considered as different traits. Heritability estimates varied from 0.17 to 0.28. Genetic correlation estimates between milk yields unadjusted and adjusted for days in milk were greater than 0.82. Adjusting for days in milk affected the parameter estimates. Multiplicative correction factors produced the highest heritability estimates. More reliable breeding value estimates can be expected by including short length lactation records in the analyses and adjusting the milk yields for days in milk, regardless of the method used for the adjustment. High selection intensity coupled to the inclusion of short length lactations and adjustment with multiplicative factors can change the sire rank..     

The impact of genetic parental distance on developmental stability and fitness in Drosophila buzzatii

Measures of genetic parental distances (GPD) based on microsatellite loci (D (2) and IR), have been suggested to be better correlated with fitness than individual heterozygosity (H), as they contain information about past events of inbreeding or admixture. We investigated if GPD increased with increasing genetic divergence between parental populations in Drosophila buzzatii and if the measures indicate past events of admixture. Further we evaluated the relationship between GPD, fitness and fluctuating asymmetry (FA) of size and shape. We investigated three populations of Drosophila buzzati, from Argentina, Europe and Australia. From these populations two intraspecific hybridisation lines were made; one between the Argentinean and European populations, which have been separated 200 years and one between the populations from Argentina and Australia, which have been separated 80 years. By doing this we obtained hybrid progeny having different levels of GPD. We found that D (2) and H can be used as indicators of admixture when comparing hybrid individuals with their parentals. IR was not informative. Our results does not exclude the presence of genetic fitness correlations (GFC) over individuals with a broad fitness range from populations in equilibrium, but we doubt the presence of GFC using GPD measures in admixed populations. Shape FA could be a relevant measure for fitness, however, only when comparing populations, not at individual level.     

Content of endogenous cytokinins in intact and transversally cut leaf blades of Bryophyllum crenatum

An increased growth of marginal buds on excised leaves from vegetative plants of Bryophyllum crenatum following transversal separation of leaf blades into three segments (apical, medial and basal) as compared with non-separated leaves, was associated with increased endogeneous cytokinin-like substances. This cycokinin increase can be demonstrated seven days after the separation and before the growth of marginal bud primordia. The level of endogenous cytokinin-like substances increases in a similar direction as the formation and growth of marginal buds, from the base of leaf blade to its apex.

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Zusammenfassung Der Anstieg von Marginalknospenbildung an den von den vegetativen Pflanzen Bryophyllum crenatum isolierten Blättern, der durch eine Querteilung der Blattspreiten in drei Segmente (apikales, mittleres und basales) gegenüber den intakten Kontrollblattspreiten nachweisbar ist, ist mit dem Anstieg der endogenen Zytokininähnlichen Stoffe verknüpft. Diesen Anstieg des Zytokininspiegels in der geteilten Blattspreite, gegenüber der intakten, kann man binnen sieben Tage nach der Querteilung der Blattspreite beweisen, d.h. in der Zeit vor dem Wachstum der Marginalknospenanlagen. Der endogene Zytokininspiegel steigt dabei von der Basis zum Apex der Blattspreite an, ähnlich wie die Marginalknospenbildung.

     

Predictions of age-age correlations of total height based on serial correlations between height increments in Maritime pine (Pinus pinaster Ait.)

Summary Successive annual height increments (AHIs) are considered to be elements of a time series. Empirical data in Maritime pine (Pinus pinaster Ait.) show that genetic correlations between successive AHIs (serial correlation) decrease when the lag between corresponding growing seasons increases. When separated by more than 13 years AHIs are no longer genetically correlated. It is shown that age-age correlations between total heights depend on three components: the serial correlation structure between AHIs, the genetic coefficient of variation of AHIs, and the phenotypic growth curve of AHIs. Age-age correlations are computed in various combinations of the three components. Serial correlation structure and the genetic coefficient of variation had the more pronounced effect on age-age correlations. The genetic correlation between height at age 10 and height at age 50 varies between 0.764 and -0.136 according to the different combinations. Results obtained by simulations are comparable to those issued from previous empirical methods. mplications on early selection procedures and on optimal selection age are discussed.     

Genetic and phenotypic correlations in a natural population of song sparrows

We estimated heritabilities, and genetic and phenotypic correlations between beak and body traits in the song sparrow ( Melospiza melodia ). We compared these estimates to values for the same traits in the Galápagos finches, Geospiza (Boag, 1983; Grant, 1983). Morphological variance is low in the song sparrow, and our results show that genetic and phenotypic correlations are considerably lower than correlations in the morphologically more variable Geospiza. Comparison using a larger sample of Galapagos populations confirms the existence of an association between variance and correlation for phenotypic values. We suggest two possible explanations for this association. First, most traits studied are functionally related, and the joint evolution of variance and correlation may have resulted from stabilizing selection about a line of optimal allometry between traits. Alternatively, introgression between populations and species could have caused correlation and variance to evolve jointly. Both selection and introgression were probably influential in producing the observed pattern, but it is not possible to estimate their relative importance with current data. Genetic and phenotypic correlations were correlated in the song sparrow, but heritabilities of traits varied greatly. As a result, the genetic variance-covariance matrix for traits is not simply a constant multiple of the phenotypic matrix. Evolutionary response to natural selection cannot, therefore, be predicted from the measurement of phenotypic characteristics alone.