Morphogens, their identification and regulation

During the course of development, cells of many tissues differentiate according to the positional information that is set by the concentration gradients of morphogens. Morphogens are signaling molecules that emanate from a restricted region of a tissue and spread away from their source to form a concentration gradient. As the fate of each cell in the field depends on the concentration of the morphogen signal, the gradient prefigures the pattern of development. In this article, we describe how morphogens and their functions have been identified and analyzed, focusing on model systems that have been extensively studied.     

Morphogens and endocytosis

During development, secreted signaling proteins of the Wingless/Wnt, Hedgehog and Decapentaplegic (Dpp)/Bone Morphogenic Protein (BMP) families act as morphogens. Previous work had shown that these molecules act directly on distant cells, although until recently nothing was known about how they reach those distant cells. During the past two years, work carried out on Drosophila using genetic and cell biology approaches have revealed that endocytosis plays a central part in the mechanisms that control the spread of morphogens.     

Morphogens and synaptogenesis in Drosophila

During development and adult life synapses are remodeled in response to genetic programs and environmental cues. This synaptic plasticity is thought to be the basis of learning and memory. The larval neuromuscular junction of Drosophila is established during embryogenesis and grows during larval development to accommodate muscle growth and maintain synaptic homeostasis. This growth is dependent on bidirectional communication between the motoneuron and the muscle fiber. The best-characterized retrograde signaling pathway is defined by Glass bottom boat (Gbb), a morphogen of the transforming growth factor-beta (TGF-beta) superfamily. Gbb acts as a muscle-derived retrograde signal that activates the TGF-beta pathway presynaptically. This pathway includes the type II receptor Wishful thinking, type I receptors Thick veins and Saxophone, and the second messenger Smads Mothers against dpp (Mad) and Medea. Mutations that block this pathway result in small synapses that are morphologically aberrant and severely impaired functionally. An emerging anterograde signaling pathway is defined by Wingless, a morphogen of the Wnt family that acts as a motoneuron-derived anterograde signal required for both pre- and postsynaptic development. In the absence of Wingless the neuronal microtubule cytoskeleton regulator Futsch is down-regulated and synaptic growth impaired. Some of these morphogens have conserved roles in mammalian synaptogenesis, and genetic analysis suggests that additional signaling molecules are required for synaptic growth at the Drosophila neuromuscular junction.     

Morphogens and cell survival during development

The notion of "morphogens" is an important one in developmental biology. By definition, a morphogen is a molecule that emanates from a specific set of cells that is present in a concentration gradient and that specifies the fate of each cell along this gradient. The strongest candidate morphogens are members of the transforming growth factor-beta (TGF-beta), Hedgehog (Hh), and Wnt families. While these morphogens have been extensively described as differentiation inducers, some reports also suggest their possible involvement in cell death and cell survival. It is frequently speculated that the cell death induction that is found associated with experimental removal of morphogens is the manifestation of abnormal differentiation signals. However, several recent reports have raised controversy about this death by default, suggesting that cell death regulation is an active process for shaping tissues and organs. In this review, we will present morphogens, with a specific emphasis on Sonic Hedgehog, a mammalian member of the Hh family, not as a positive regulators of cell differentiation but as key regulators of cell survival.     

Nitrate leaching as a function of plant community richness and composition,and the scaling of soil nutrients,in a restored temperate grassland

Two, two-factor experiments manipulated species and functional form plant richness and the spatial scaling of either nitrogen (N) or phosphorous (P) in restored tallgrass prairie in North Dakota, USA. Nitrate (NO₃ ⁻) leaching was measured in these plots and analyzed for its response to the treatment factors and measured plant community parameters. Nitrate extracted from anion exchange resin was regressed against the first principal component of species and functional form richness, the spatial scaling of N or P, the measured biomass of the functional forms used and the plot values for plant parameters based on weighted averages by species biomass. The treatments applied in the N and P experiments were 1, 2, 5, 10, or 20 plant species taxa, and the application of fertilizer in a random fractal pattern with either fine-scale or coarse-scale heterogeneity. Nitrate leaching decreased with plant diversity and increased by a factor of two going from fine-scale to coarse-scale N. It was also related to a number of plant functional parameters, and was positively correlated with the biomass of late successional C₃ grasses (Koeleria cristata (Lam.) Beauv., Poa pratensis L., Stipa comata Trin. & Rupr., and Stipa viridula Trin.), which are known from previous studies to have negative mycorrhizal responsiveness and are characterized by high root lateral spread per unit of root biomass. Our results show that while plant diversity has a highly significant influence on plant community uptake of NO₃ ⁻, this effect is mediated by the scaling of soil N and the functional traits of the species comprising the plant assemblage.     

Morphogens in motion: growth control of the neural tube

The entire vertebrate nervous system develops from a simple epithelial sheet, the neural plate which, along development, acquires the large number and wide variety of neuronal cell types required for the construction of a functional mature nervous system. These include processes of growth and pattern formation of the neural tube that are achieved through complicated and tightly regulated genetic interactions. Pattern formation, particularly in the vertebrate central nervous system, is one of the best examples of a morphogen-type of function. Cell cycle progression, however, is generally accepted to be dependent on cell-intrinsic factors. Recent studies have demonstrated that proliferation of neural precursors is also somehow controlled by secreted signaling molecules, well-known by their role as morphogens, such as fibroblast growth factor (FGF), vertebrate orthologs of the Drosophila wingless (Wnt), hedgehog (Hh), and transforming growth factor beta (TGF-beta) families, that in turn regulate the activity of factors controlling cell cycle progression. In this review we will summarize the experimental data that support the idea that classical morphogens can be reused to regulate proliferation of neural precursors.     

Ultrastructural and biochemical basis of the digestion of nectar and other nutrients by the moth Erinnyis ello

The midgut epithelium of adult Erinnyis ello L. (Lepidoptera: Sphingidae) forms ramified villus-like folds. The epithelial cells exhibit long microvilli and narrow and sinuous basal channels studded with particles. These morphological features are thought to be involved in the absorption of nutrients present in low concentration in food. Enzymatic assays in E. ello adults showed the presence of amylase in salivary glands, and the occurrence of aminopeptidase, -fructosidase, - and -glucosidase, trehalase and trypsin in the midgut. Calcium differential precipitation of midgut homogenates showed that aminopeptidase and -glucosidase are integral proteins of the microvillar cell membranes, whereas the other enzymes are soluble or partly soluble and partly membrane bound. Detergent-solubilized aminopeptidase (pH optimum 7.5) sediments as a protein with Mr 120000, whereas trehalase (pH optimum 6.5), as a protein with Mr 95000. The activities of amylase (pH optimum 5.5), -glucosidase (pH optimum 5.0) and trypsin (pH optimum 9.5) were not sufficiently high to be further characterized, whereas -fructosidase and membrane-bound -glucosidase were characterized elsewhere. The data suggest that nectar-feeding E. ello adults are able to some extent to digest and absorb starch and proteins, in addition to nectar sugars. Initial digestion is considered to occur in midgut lumen and final digestion on the surface of midgut cells under the action of microvillar enzymes.

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Résumé L'épithélium de l'intestin moyen des adultes de E. ello L; (Lépido., Sphingidae) est replié en villosités. Les cellules épithéliales présentent de longs microvilli et d'étroits canaux sinueux basaux garnis de particules. Ces caractères morphologiques peuvent être interprétés comme impliquant l'absorption d'aliments présents en faible concentration dans la nourriture. Des études enzymatiques ont révélé la présence d'amylase dans les glandes salivaires, et la découverte d'aminopeptidase, de -fructosidase, d'- et -glucosidases, de tréhalase et de trypsine dans l'intestin moyen. La précipitation calcique différentielle d'homogénats de l'intestin moyen a montré que l'aminopeptidase et l'-glucosidase sont des protéines appartenant aux membranes microvillaires cellulaires, tandis que les autres enzymes sont entièrement ou partiellement solubles et partiellement liées aux membranes. L'aminopeptidase solubilisée par un détergent (pH optimum: 7,5) sédimente comme une protéine de Mr 120000, tandis que la tréhalase (pH optimum: 6,5) comme une protéine de Mr 95000. Les activités de l'amylase (pH optimum: 5,5), de la -glucosidase (pH optimum 5,0) et de la trypsine (pH optimum 9,5) n'étaient pas suffisantes pour être caractérisées, tandis que la -fructosidase et l'-glucosidase liée à la membrane ont été caractérisées ailleurs. Les résultats suggèrent que les adultes E. ello consommateurs de nectar sont capables de digérer et d'absorber une certaine quantité d'amidon et de protéines, en plus des sucres du nectar. La digestion doit débuter dans la lumière de l'intestin moyen pour s'achever à la surface des cellules intestinales sous l'action des enzymes des microvilli.

     

Genetic basis for innovations in floral organ identity

Of the many innovations associated with the radiation of the angiosperms, the evolution of a petal identity program is among the best understood from a genetic standpoint. Although the existing data do indicate that similar genetic mechanisms control petal development across diverse taxa, there is also considerable evidence for variability in petal identity programs, likely due to a number of factors. These points are illustrated through a review of our current knowledge on the subject, integrating phylogenetic, morphological, and genetic studies. Comparative studies of petal identity highlight the complex nature of homology in plants and stand as a cautionary tale for the interpretation of gene expression data.     

Morphological and kinematic basis of the hummingbird flight stroke: scaling of flight muscle transmission ratio

Hummingbirds (Trochilidae) are widely known for their insect-like flight strokes characterized by high wing beat frequency, small muscle strains and a highly supinated wing orientation during upstroke that allows for lift production in both halves of the stroke cycle. Here, we show that hummingbirds achieve these functional traits within the limits imposed by a vertebrate endoskeleton and muscle physiology by accentuating a wing inversion mechanism found in other birds and using long-axis rotational movement of the humerus. In hummingbirds, long-axis rotation of the humerus creates additional wing translational movement, supplementing that produced by the humeral elevation and depression movements of a typical avian flight stroke. This adaptation increases the wing-to-muscle-transmission ratio, and is emblematic of a widespread scaling trend among flying animals whereby wing-to-muscle-transmission ratio varies inversely with mass, allowing animals of vastly different sizes to accommodate aerodynamic, biomechanical and physiological constraints on muscle-powered flapping flight.     

Inorganic nutrients,bacteria, and the microbial loop

The realization that natural assemblages of planktonic bacteria may acquire a significant fraction of their nitrogen and phosphorus via the uptake of dissolved inorganic nutrients has modified our traditional view of these microorganisms as nutrient remineralizers in plankton communities. Bacterial uptake of inorganic nitrogen and phosphorus may place bacteria and phytoplankton in competition for growth-limiting nutrients, rather than in their traditional roles as the respective source and sink for these nutrients in the plankton. Bacterial nutrient uptake also implies that bacterivorous protozoa may play a pivotal role in the remineralization of these elements in the microbial loop. The overall contribution of bacterial utilization of inorganic nutrients to total nutrient uptake in the ocean is still poorly understood, but some generalizations are emerging with respect to the geographical areas and community physiological conditions that might elicit this behavior.     

Light, nutrients and the growth of herbaceous forest species

The herb layer of forests planted on former agricultural land often differs from that of old-growth forest. This study investigates if the expected increased nutrient availability in the shaded conditions of newly planted forests and the plasticity of the species to adjust their biomass allocation to different levels of light and nutrients help to explain these differences in the herb layers of the two forest types. In a greenhouse experiment biomass distribution and production of two species characteristic for the highly shaded forest floor, Circaea lutetiana and Mercurialis perennis, and two species more common in the forest-edge, Aegopodium podagraria and Impatiens parviflora were studied at different levels of light (2%, 8% and 66% of the full light level) and nutrients (30 and 300 kg N ha^–1 per year). The main factor affecting allocation and biomass production was light availability. Nutrient supply only had a significant effect at the higher light levels. Species were mainly plastic to changes in light and the two species from the forest floor showed to be more rigid in allocation pattern than the species from the forest-edge. So, although the species from the forest-edge were more plastic, they did not profit from the increased nutrient supply because the main factor affecting biomass distribution and production was light availability.     

Extinction risk, coloured noise and the scaling of variance

The impact of temporally correlated fluctuating environments (coloured noise) on the extinction risk of populations has become a main focus in theoretical population ecology. In this study we particularly focus on the extinction risk in strongly correlated environments. Here, we found that, in contrast to moderate auto-correlation, the extinction risk was highly dependent on the process of noise generation, in particular on the method of variance scaling. Such scaling is commonly applied to avoid variance-driven biases when comparing the extinction risk under white and coloured noise. We show that for strong auto-correlation often-used scaling techniques lead to a high variability in the variances of the resulting time series and thus to deviations in the subsequent extinction risk. Therefore, we present an alternative scaling method that always delivers the target variance, even in the case of strong auto-correlation. In contrast to earlier techniques, our very intuitive method is not bound to auto-regressive processes but can be applied to all types of coloured noises. We strongly recommend our method to generate time series when the target of interest is the effect of noise colour on extinction risk not obscured by any variance effects.     

Longevity nutrients resveratrol, wines and grapes

A mild-to-moderate wine drinking has been linked with reduced cardiovascular, cerebrovascular, and peripheral vascular risk as well as reduced risk due to cancer. The reduced risk of cardiovascular disease associated with wine drinking is popularly known as French Paradox. A large number of reports exist in the literature indicating that resveratrol present in wine is primarily responsible for the cardioprotection associated with wine. Recently, resveratrol was shown to extend life span in yeast through the activation of longevity gene SirT1, which is also responsible for the longevity mediated by calorie restriction. This review summarizes the reports available on the functional and molecular biological aspects of resveratrol, wine and grapes in potentiating the longevity genes.     

Past, present and future of organic nutrients

Background

Slowing crop yield increases despite high fertiliser application rates, declining soil health and off-site pollution are testimony that many bioproduction systems require innovative nutrient supply strategies. One avenue is a greater contribution of organic compounds as nutrient sources for crops. That plants take up and metabolise organic molecules (‘organic nutrients’) has been discovered prior to more recent interest with scientific roots reaching far into the 19th century. Research on organic nutrients continued in the early decades of the 20th century, but after two world wars and yield increases achieved with mineral and synthetic fertilisers, a smooth continuation of the research was not to be expected, and we find major gaps in the transmission of methods and knowledge.

Scope

Addressing the antagonism of ‘organicists’ and ‘mineralists’ in plant nutrition, we illustrate how the focus of crop nutrition has shifted from organic to inorganic nutrients. We discuss reasons and provide evidence for a role of organic compounds as nutrients and signalling agents.

Conclusion

After decades of focussing on inorganic nutrients, perspectives have greatly widened again. As has occurred before in agricultural history, science has to validate agronomic practises. We argue that a framework that views plants as mixotrophs with an inherent ability to use organic nutrients, via direct uptake or aided by exoenzyme-mediated degradation, will transform nutrient management and crop breeding to complement inorganic and synthetic fertilisers with organic nutrients.     

Inbreeding reduces power-law scaling in the distribution of fluctuating asymmetry: an explanation of the basis of developmental instability

The study of fluctuating asymmetry has been controversial because of conflicting results found in much of the primary literature. It has been suggested that the source of this conflict is the fact that the basis of fluctuating asymmetry is poorly understood and that, as a consequence, methodology of fluctuating asymmetry studies may be flawed. A new model for the phenomenological basis of fluctuating asymmetry, that variation in fluctuating asymmetry is in large part due to the random exponential growth of cell populations (geometric Brownian motion) that are terminated randomly around a genetically programmed development time, is presented here. If termination of development has a genetic component, then scaling effects and kurtosis in the distribution of fluctuating asymmetry should increase with genetic redundancy of the population. This model prediction was tested by comparing the distribution of multivariate size and shape fluctuating asymmetry in large samples collected from both wild populations and four moderately inbred lines of Drosophila simulans. It was found that while wild populations were best described by a lognormal distribution with power-law scaled tails, the inbred lines derived from the wild stock were dramatically normalized (half-normal) in three of four cases. As predicted, the scaling exponent of the upper tail of the distribution of fluctuating asymmetry increased with inbreeding while the kurtosis and mean fluctuating asymmetry decreased with inbreeding. The model suggests an additional explanation of leptokurtosis in fluctuating asymmetry. Kurtosis and scaling of the statistical distribution of fluctuating asymmetry in a population is related directly to genetic differences between individuals and these differences affect their ability to buffer the process of development against random perturbations.     

Ontogenetic scaling of metabolism, growth, and assimilation: testing metabolic scaling theory with Manduca sexta larvae

Metabolism, growth, and the assimilation of energy and materials are essential processes that are intricately related and depend heavily on animal size. However, models that relate the ontogenetic scaling of energy assimilation and metabolism to growth rely on assumptions that have yet to be rigorously tested. Based on detailed daily measurements of metabolism, growth, and assimilation in tobacco hornworms, Manduca sexta, we provide a first experimental test of the core assumptions of a metabolic scaling model of ontogenetic growth. Metabolic scaling parameters changed over development, in violation of the model assumptions. At the same time, the scaling of growth rate matches that of metabolic rate, with similar scaling exponents both across and within developmental instars. Rates of assimilation were much higher than expected during the first two instars and did not match the patterns of scaling of growth and metabolism, which suggests high costs of biosynthesis early in development. The rapid increase in size and discrete instars observed in larval insect development provide an ideal system for understanding how patterns of growth and metabolism emerge from fundamental cellular processes and the exchange of materials and energy between an organism and its environment.