基于景观遗传学的滇金丝猴栖息地连接度分析

结合景观遗传学,应用最小费用距离模型对物种栖息地进行连接度分析,能够为生物多样性保护和自然保护区管理提供更加真实准确及可实践操作的指导。选取滇金丝猴这一珍稀濒危物种,结合景观遗传学,应用最小费用距离模型对其栖息地进行了连接度和潜在扩散廊道分析。并且通过连接度的分析和制图绘制出了更为准确的种群间潜在扩散廊道,确定了受人工障碍影响的廊道及敏感区域。结果表明,研究区内的5个亚群中,仅S3亚群内的5个猴群保持着较好的连接度,总体来说,各亚群内的连接度相对于各亚群间连接度保持的较好。除S3亚群中猴群间的潜在扩散廊道较为理想外,其余种群间的潜在扩散廊道均受人工斑块的影响,多数廊道被人工障碍阻断,或面临即将被阻断的情况,对于滇金丝猴的扩散交流影响较大。敏感区域多集中在中南部的3个亚群间,这些敏感区域应作为景观恢复及保护区规划的重要优先区域。     

植物景观遗传学研究进展

植物景观遗传学是新兴的景观遗传学交叉学科的一个重要研究方向。目前植物景观遗传学的研究虽落后于动物,但其在生物多样性保护方面具有的巨大潜力不可忽视。从景观特征对遗传结构、环境因素对适应性遗传变异影响两个方面,系统综述了近十年来国际上植物景观遗传学的研究焦点和研究进展,比较了植物景观遗传学与动物景观遗传学研究在研究设计和研究方法上的异同,并基于将来植物景观遗传学由对空间遗传结构的描述发展为对景观遗传效应的量化分析及预测的发展框架,具体针对目前景观特征与遗传结构研究设计的系统性差、遗传结构与景观格局在时间上的误配、适应性位点与环境变量的模糊匹配、中性遗传变异与适应性遗传变异研究的分隔、景观与遗传关系分析方法的局限等五个方面提出了研究对策。     

基于电路理论的滇金丝猴生境景观连通性分析

景观连通性对生态系统服务、动植物基因交流的保护以及景观规划等都具有重要影响作用。以滇金丝猴活动区域为研究对象,基于电路理论建立滇金丝猴栖息地的连接度模型,分析滇金丝猴栖息地间的连通性,对于连通性较好的区域,识别出了重点保护与恢复区域;对于连通性较差的区域,通过电路理论连接度模型确定了影响今后廊道建设的重点保护与恢复区域。结果表明:各区域内部猴群栖息地连通性较好,其中中部地区最优,其次是北部,最差为南部。G3和G4栖息地斑块作为对连接各区域猴群生境斑块起到关键作用的\"踏脚石\"斑块是今后重点保护与恢复的区域,保护和恢复南部与中部猴群栖息地间\"空白区域\"的植被对于整个滇金丝猴活动区域的猴群基因交流也尤为重要。方法上,相较于图论得到的单一路径,电路理论得到的多路径更具有现势性。研究方法及研究成果可为濒危物种保护和区域生态廊道设计提供重要参考价值。     

山地景观遗传学研究文献综述

山地生态系统是生物多样性分布与保护的热点。山地景观遗传学（Mountain Landscape Genetics）研究在山地景观尺度上野生生物的种群遗传格局及其驱动机制和影响因素,是景观遗传学（Landscape Genetics）的重要分支。山地景观遗传学研究对于深入理解物种的空间遗传结构、形成过程、物种形成与分化机制具有重要意义与价值,同时可以为珍稀濒危物种和山地生物多样性的有效保护与管理提供科学指导。为了更好地掌握目前山地景观遗传学的发展趋势与重点研究问题,为未来生物多样性与山地生态系统的保护管理提供科学参考,基于对Web of Science核心数据库和中国知网数据库的系统检索,全面汇总分析了1999-2020年山地景观遗传学领域发表的192篇英文文献与31篇中文文献。结果显示,该领域自2008年起迅速发展,截至2020年共有46个国家的研究机构发表了山地景观遗传相关研究,研究热点地区包括北美洲的落基山脉、内华达山脉、阿巴拉契亚山脉,欧洲的阿尔卑斯山脉、比利牛斯山脉,以及亚洲的喜马拉雅-横断山脉。研究对象类群涵盖真菌、植物、节肢动物、脊椎动物,其中脊椎动物是研究发表最多的类群,占发表文献总数的62.0%;脊椎动物中,又以对哺乳类（占脊椎动物发表文献总数的52.9%）与两栖类（23.5%）的研究最多。目前主要的研究方向包括：（1）识别山地景观中的基因流路径或阻碍;（2）量化山地景观特征对种群遗传结构时空变化的影响。中国是发表山地景观遗传学文章数量最多的亚洲国家,近十年来相关研究发展迅速,研究类群以植物（占在中国发表文献总数的62.3%）与脊椎动物（35.8%）为主,对脊椎动物的研究中以两栖动物为最多（占所有脊椎动物发文数量的52.6%）,研究区域主要集中在喜马拉雅-横断山脉与秦岭。本文进一步对目前山地景观遗传学研究中存在的空缺及未来重点关注问题提出建议。     

景观遗传学原理及其在生境片断化遗传效应研究中的应用

景观遗传学是近年来在景观生态学和种群遗传学之间形成的一个交叉领域,强调景观的组成、空间构型和环境梯度对基因流、种群遗传空间结构和局域种群适应的影响。景观遗传学尚未成为一门独立的学科,其理论基础主要来自分子遗传学、种群生物学和景观生态学。现代分子遗传标记技术、遥感和GIS支持下的景观分析和空间统计方法的综合运用是景观遗传学主要研究途径。系统介绍了景观遗传学的基础概念,关键科学问题,基本理论框架,及其与相邻研究领域的关系,综述了景观遗传学最为关注的现实课题——景观碎裂化的种群遗传效应的研究进展,主要涉及生境片断化的遗传效应、不同属性的物种响应、以及生境片断化过程的选择作用等方面。通过采取一种跨尺度的视角,景观遗传学研究显著深化了关于景观碎裂化对生物多样性影响的理解。     

人为干扰对神农架川金丝猴连通性及遗传多样性的影响

川金丝猴湖北种群是川金丝猴分布的最东缘,现主要分布于神农架国家公园和巴东自然保护区,其作为单独的管理单元,相对较低的遗传多样性、孤立的遗传状态和较小的种群数量,使得该种群面对环境变化脆弱性高。以神农架为研究区域,首先基于物种分布模型获得川金丝猴移动的阻力图层,利用电路理论分析适宜生境连接度;其次,设置道路和旅游两个人为干扰情景,运用最小费用距离模型与电路理论模型,分析道路和旅游活动对川金丝猴移动路径以及对不同亚群内和亚群间连通性的影响;最后,利用CDPOP软件模拟道路对川金丝猴遗传多样性的影响。结果表明:(1)神农架川金丝猴适宜生境分布较集中,生境斑块间存在多个潜在扩散区域;(2)道路改变了川金丝猴往来于南北生境间的最优路径,旅游干扰对川金丝猴移动路径无明显影响,其干扰主要在于川金丝猴对其具有回避性,回避距离为100 m;(3)道路显著降低金猴岭亚群内的连通性,并显著增加了所有亚群间的移动阻力,旅游活动对亚群内和亚群间的连通性无显著影响;(4)川金丝猴种群在150年内的遗传多样性呈下降趋势,道路的影响将加剧遗传多样性下降的程度。基于以上结果本文提出了针对性的保护建议,对于该物种的保护和其他濒危物种的类似研究具有较强的参考价值和借鉴意义。     

普通小麦相关研究进展在遗传学理论教学中的应用

普通小麦(T.aestivum L.)又称异源六倍体小麦,其基因组是由来自3个不同二倍体祖先且亲缘关系较近的基因组(A、B和D)构成。普通小麦的进化历程一直是遗传学教学中阐述物种形成和染色体数目变异机制的经典案例。近年来,伴随着科学技术的快速发展和应用,普通小麦的相关研究在细胞学水平、分子水平、基因组水平均取得了重大突破和进展。本文对普通小麦最新研究成果进行了梳理和总结,将相关前沿科学内容与遗传学各章节的理论教学相结合,并应用于遗传学的理论教学中。这不仅是对经典遗传学教材内容的补充和发展,同时也能够让学生认识到遗传学是一门不断发展的自然科学,在提高学生学习兴趣的同时,实现对遗传学基本内容和前沿科学动态的系统学习。     

整合电路理论的生态廊道及其重要性识别

景观连接度被认为是影响诸多生态过程的一个重要因素.基于最小累积阻力模型的最小成本路径识别方法可以有效识别异质性景观中的功能连接,已被广泛应用到景观的功能连接评价与生态廊道模拟的研究中.基于电路理论的连接度模型用电阻代替了图论中的边、用电阻距离代替成本距离,来衡量异质性景观的功能连接.本文以SIMMAP 2.0软件生成的模拟景观为对象,借助于Linkage Mapper工具和Circuitscape软件,探讨如何将最小累积阻力模型与基于电路理论的连接度模型相结合来识别生态廊道及其景观要素的相对重要性.结果表明: 两种模型在应用中各有优势,互为补充.最小成本路径方法可以有效识别栖息地之间的最小成本廊道,基于电路理论的连接度模型通过电流密度的计算可以有效识别对景观连接性有重要影响的景观要素和“夹点”地区,并且“夹点”的位置不受廊道宽度的影响,在廊道重要性识别研究中具有明显优势.该方法可为区域生态保护规划和生态廊道设计提供科学依据.     

RAPD分子标记在园艺植物遗传学研究中的应用

1971年Khorana等提出多聚链式反应 (PolymeraseChainRe action ,PCR)的基本概念之后 ,1985年Saiki等阐述了具体原理和作法 ,并在 1988年从细菌中发现了热稳定性的TaqDNA聚合酶 ,从而实现了PCR反应的自动化。在PCR技术的基础上 ,Williams等[1 ] 1990年采用随机核苷酸序列为引物扩增基因组DNA的随机片段 ,产生了一种新的分子标记———随机扩增多态性DNA (RandomAmplifiedPolymorphicDNA) ,简称RAPD ,即以一个寡聚核苷酸序列 (通常为 10碱基 )为引物 ,对基因组DNA随机扩增 ,从而得到多态性图谱作为遗传标记的方法。同年Welsh…     

基于图论的景观图表达、分析及应用

景观结构和空间格局一直是景观生态学的核心问题,图论的应用为景观格局的分析提供了一种研究框架,基于图论的景观图逐渐被应用于生物多样性保护的连通性建模和景观规划的决策支持研究,景观图的表达、分析和应用已成为保护生物学和景观生态学研究的热点.本文首先介绍了景观图的图论基础,在Scopus数据库的基础上,检索了1993-201...     

Superdiffusion in a Model for Diffusion in a Molecularly Crowded Environment

We present a model for diffusion in a molecularly crowded environment. The model consists of random barriers in a percolation network. Random walks in the presence of slowly moving barriers show normal diffusion for long times but anomalous diffusion at intermediate times. The effective exponents for square distance vs time usually are below one at these intermediate times, but they can also be larger than one for high barrier concentrations. Thus, we observe sub- and superdiffusion in a crowded environment.     

Dispersal, landscape occupancy and population structure in the butterfly Melanargia galathea

Dispersal is a key ecological process linking metapopulation dynamics in the landscape to distribution patterns at larger spatial scales. In this study, we investigated the landscape occupancy and genetic population structure of a butterfly species, Melanargia galathea. Several landscapes differing in composition and structure were sampled as well as populations at different spatial scales. We found that M. galathea occupied 91.3% of all habitat patches available within a particular landscape, probably due to a dominance of landscape scale processes such as rescue effect and recolonisation. A high level of genetic polymorphism within the sampled populations and a very low amount of genetic differentiation between populations was observed (G_st=0.034), characteristic of species with high dispersal capacity and/or high density. High dispersal rates ensured considerable gene mixing at the landscape scale while the influence of distance on dispersal success was detected at the regional and continental scales by a significant amount of isolation by distance. We also found that, at the landscape scale, the dispersal of this butterfly species was influenced by the spatial distribution of its habitat patches.

Zusammenfassung

Die Ausbreitung ist ein ökologischer Schlüsselprozess, der die Metapopulationsdynamik in einer Landschaft mit den Verbreitungsmustern auf einer größeren räumlichen Skala verbindet. In dieser Studie untersuchten wir die Verbreitungsmuster und die genetische Populationsstruktur einer Schmetterlingsart, Melanargia galathea. Es wurden sowohl einige Landschaften beprobt, die sich in der Zusammensetzung und der Struktur unterschieden, als auch Populationen auf verschiedenen räumlichen Skalen. Wir fanden, dass M. galathea 91.3% aller verfügbaren Habitatflecken in einer bestimmten Landschaft besetzte, möglicherweise aufgrund der Dominanz von Landschaftsskalenprozessen wie “Rescue-Effekt” und Rekolonisation. Es wurde ein hoher genetischer Polymorphismuslevel und ein sehr geringer Umfang genetischer Differenzierung innerhalb der beprobten Populationen beobachtet (G_st=0.034), was charakteristisch für Arten mit einer großen Ausbreitungsfähigkeit und/oder hoher Dichte ist. Hohe Ausbreitungsraten sicherten eine beträchtliche Genvermischung auf der Landschaftsskala, während der Einfluss der Entfernung auf den Verbreitungserfolg auf der regionalen und kontinentalen Skala durch einen signifikanten Anteil der Isolation aufgrund von Entfernung festgestellt wurde. Wir fanden auch, dass auf der Landschaftsskala die Ausbreitung dieses Schmetterlings durch die räumliche Verteilung der Habitatflecken beeinflusst wurde.     

Strong genetic exchange among populations of a specialist bee, <Emphasis Type="Italic">Andrena vaga</Emphasis> (Hymenoptera: Andrenidae)

Habitat fragmentation is believed to be a key threat to biodiversity, with habitat specialists being stronger affected than generalists. However, pioneer species might be less affected by fragmentation, as their high colonization potential should increase gene flow. Here, we present an analysis of the genetic structure of populations of the solitary bee Andrena vaga, which naturally occurs in sandy habitats and is specialized on willow (Salix) pollen as larval food and sandy soils as nesting sites. While the species is widespread in the young sandy landscapes of our main study area (Emsland, northwestern Germany), it occurs less frequently in the Lower Rhine valley. Our analyses of six polymorphic microsatellites show that the populations are only slightly differentiated, suggesting a relatively strong gene flow. No genetic structure corresponding to the geographic origin was found as the variability within populations accounted for the major proportion of variation. F_ST values were higher and allelic richness was lower in the Lower Rhine valley, supporting the hypothesis that habitat availability affects the degree of genetic exchange between populations. Inbreeding coefficients were generally high and nearly all populations had a heterozygote deficiency, which could be explained by the breeding strategy of A. vaga, which nests in aggregations.     

Connectivity patterns inferred from the genetic structure of white seabream (Diplodus sargus L.)

The marine environment seems, at first sight, to be a homogeneous medium lacking barriers to species dispersal. Nevertheless, populations of marine species show varying levels of gene flow and population differentiation, so barriers to gene flow can often be detected.We aim to elucidate the role of oceanographical factors in generating connectivity among populations shaping the phylogeographical patterns in the marine realm, which is not only a topic of considerable interest for understanding the evolution of marine biodiversity but also for management and conservation of marine life. For this proposal, we investigate the genetic structure and connectivity between continental and insular populations of white seabream in North East Atlantic (NEA) and Mediterranean Sea (MS) as well as the influence of historical and contemporary factors in this scenario using mitochondrial (cytochrome b) and nuclear (a set of 9 microsatellite) molecular markers.Azores population appeared genetically differentiated in a single cluster using Structure analysis. This result was corroborated by Principal Component Analysis (PCA) and Monmonier algorithm which suggested a boundary to gene flow, isolating this locality. Azorean population also shows the highest significant values of F_ST and genetic distances for both molecular markers (microsatellites and mtDNA). We suggest that the breakdown of effective genetic exchange between Azores and the others' samples could be explained simultaneously by hydrographic (deep water) and hydrodynamic (isolating current regimes) factors acting as barriers to the free dispersal of white seabream (adults and larvae) and by historical factors which could be favoured for the survival of Azorean white seabream population at the last glaciation.Mediterranean islands show similar genetic diversity to the neighbouring continental samples and non-significant genetic differences. Proximity to continental coasts and the current system could promote an optimal larval dispersion among Mediterranean islands (Mallorca and Castellamare) and coasts with high gene flow.     

Population genetics of the mangrove salt marsh snake, <Emphasis Type="Italic">Nerodia clarkii compressicauda</Emphasis>, in a linear,fragmented habitat

The mangrove salt marsh snake (Nerodia clarkii compressicauda) occupies a unique and disappearing habitat in much of coastal southern Florida. Given extensive habitat fragmentation and high predation pressure in open spaces, it seems likely that populations of N. c. compressicauda consist of isolated groups of related individuals. To assess the degree of population subdivision in this species we genotyped a total of 125 individuals from seven locations along the Florida coast at four microsatellite loci. Overall heterozygosity was moderate (57.7%) and somewhat lower than that seen in other snake species. Population subdivision was particularly pronounced with 19 of 21 sample pair-wise Φ_ST values significantly different from zero and ranging from 0.064 to 0.343 (P ≤ 0.05). About 11 of 39 alleles were private alleles that also tended to be in high frequency in the populations where they occurred (average frequency ~27%). The correlation of genetic and geographic distances was highly significant and positive (r ² = 0.8733 and P < 0.001) with Φ_ST increasing by ~0.01 for every 10 km of separation. Overall, salt marsh snake populations appear to be fractured into isolated neighborhoods on the order of 50–80 km. In spite of its apparent local abundance, we believe that N. c. compressicauda is in need of conservation protection. The combination of extremely low dispersal, narrow habitat requirements, and most importantly, extensive habitat alteration resulting from coastal real estate development may mean that N. c. compressicauda is highly susceptible to population extirpation and potentially extinction.