Documenting the biogeographic history of Microtus cabrerae through its fossil record

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The influence of climate on morphometric traits of fossil populations of Microtus arvalis and M. agrestis from the Carpathian Basin,northern Hungary

In this study, we analysed morphometrically fossil populations of Microtus arvalis and M. agrestis from eight late Middle to Late Pleistocene archaeological and palaeontological sites in the Carpathian Basin, northern Hungary. The intra‐ and interspecific variations in both species can be related to climatic oscillations linked to the onset of the Eemian interglacial and the first phases of Marine Isotope Stage 5. The size of M. agrestis can be correlated with the presence/absence of relatively humid climatic and environmental conditions and of surface water resources (such as marshes and flooded areas). A possible immigration event of M. arvalis populations into the Carpathian Basin, also related to the Eemian interglacial, is also identified.     

Variations in <Emphasis Type="Italic">Microtus arvalis</Emphasis> and <Emphasis Type="Italic">Microtus agrestis</Emphasis> (Arvicolinae,Rodentia) Dental Morphologies in an Archaeological Context: the Case of Teixoneres Cave (Late Pleistocene,North-Eastern Iberia)

Morphological and morphometric variations in the first lower molars of Microtus arvalis and Microtus agrestis from the late Pleistocene site of Teixoneres Cave (Barcelona, Spain) have been investigated in order to understand the modifications in dental patterns occurring in these two species in a peripheral region of their distribution area. It was possible to identify along the sequence differences in size and frequencies of morphotypes within the two populations, corresponding to environmental and climatic oscillations. Hypotheses to explain these intraspecific changes are discussed, and the variations are ascribed primarily to small-scale intraregional movements of these two rodent populations.     

Rethinking the dispersal of Homo sapiens out of Africa

Current fossil, genetic, and archeological data indicate that Homo sapiens originated in Africa in the late Middle Pleistocene. By the end of the Late Pleistocene, our species was distributed across every continent except Antarctica, setting the foundations for the subsequent demographic and cultural changes of the Holocene. The intervening processes remain intensely debated and a key theme in hominin evolutionary studies. We review archeological, fossil, environmental, and genetic data to evaluate the current state of knowledge on the dispersal of Homo sapiens out of Africa. The emerging picture of the dispersal process suggests dynamic behavioral variability, complex interactions between populations, and an intricate genetic and cultural legacy. This evolutionary and historical complexity challenges simple narratives and suggests that hybrid models and the testing of explicit hypotheses are required to understand the expansion of Homo sapiens into Eurasia.     

Phylogeography and demographic history of Shaw's Jird (Meriones shawii complex) in North Africa

Palaeoenvironmental data and climatic reconstructions show that the Mediterranean ecoregion of North Africa underwent drastic ecological changes during the Pleistocene. Given its rich palaeontological record, North Africa is a pertinent region for documenting the role of climate change and human mediated‐habitat changes on the demography and genetic structure of faunal species. In the present study, we collected data from this species in Morocco, Algeria, and Tunisia, and we combined molecular (mitochondrial and nuclear DNA sequences, microsatellites), fossil, palaeoenvironmental, and human context data to propose an explanation for the fluctuations of populations belonging to the Meriones shawii complex in the past. Genetic and fossil data both indicate a strong bottleneck in Moroccan populations at the Middle Holocene (last interglacial optimum) compared to the Late Pleistocene. Our mitochondrial DNA data suggest a diversification event within Morocco corresponding to the 130–125 kya interglacial optimum. Given that (1) major demographic changes in the M. shawii complex coincide with the interglacial optimums, and (2) the impact of human activities on the landscape and faunal communities was moderate during the Middle Holocene (beginnings of the Neolithic culture), our results demonstrate that climate, rather than anthropogenic influences, likely explains the M. shawii complex population decline in the Holocene.     

An intertropical opossum (Mammalia,Marsupialia, Didelphidae) from the late Middle–Late Pleistocene of austral South America

The record of an opossum is reported here coming from a Middle–Late Pleistocene fluvial sedimentary sequence outcropping in the austral Chaco geomorphological region, Santa Fe province. Despite this family has different living forms widely distributed in South American plains, with great tolerance to diverse habitats conditions, the Pleistocene occurrence of didelphoids is very scarce and only limited to Holocene deposits sensu lato from austral pampean plains. The specimen found represents at the moment the only Pleistocene didelphoid opossum from Argentina with an accurate stratigraphical context. In a taphonomic framework, MFA-Pv 1582 shows no evidence of abrasion produced by transport, probably resulting of a very short time-transport. This intertropical form of Didelphis genus from Pleistocene sequences displays undoubtedly novel and sustancial paleoenvironmental and ecomorphological conditions to test in the austral Chaco region. Although the specimen shares a generalized didelphoid form, some morphologies in the humerus are closer with arboreal habits. In this context, added to the sedimentological and stratigraphical framework, it’s possible to suggest that subtropical conditions with some woodlands and wetlands dominate the provenance region of the fossil material, over a late Middle–Late Pleistocene interglacial period.     

First record of coralline demosponges in the Pleistocene: implications for reef ecology

We report the first discovery of coralline sponges from Pleistocene reef limestones of Vanuatu. Sponges of the genus Acanthochaetetes were identified from two reef terraces of Middle and Late Pleistocene age. As these sponges document cryptic habitats in modern coral reefs, they may be index fossils of cryptic habitats in the Pleistocene as well, thereby providing clues on growth conditions in fossil reefs. The small size of the discovered specimens may be attributed to the transient nature of their cryptic habitats, either due to reef growth or the occurrence of an unusual event.     

Hominin teeth from the early Late Pleistocene site of Xujiayao,Northern China

It is generally accepted that from the late Middle to the early Late Pleistocene (～340–90 ka BP), Neanderthals were occupying Europe and Western Asia, whereas anatomically modern humans were present in the African continent. In contrast, the paucity of hominin fossil evidence from East Asia from this period impedes a complete evolutionary picture of the genus Homo, as well as assessment of the possible contribution of or interaction with Asian hominins in the evolution of Homo sapiens and Homo neanderthalensis. Here we present a comparative study of a hominin dental sample recovered from the Xujiayao site, in Northern China, attributed to the early Late Pleistocene (MIS 5 to 4). Our dental study reveals a mosaic of primitive and derived dental features for the Xujiayao hominins that can be summarized as follows: i) they are different from archaic and recent modern humans, ii) they present some features that are common but not exclusive to the Neanderthal lineage, and iii) they retain some primitive conformations classically found in East Asian Early and Middle Pleistocene hominins despite their young geological age. Thus, our study evinces the existence in China of a population of unclear taxonomic status with regard to other contemporary populations such as H. sapiens and H. neanderthalensis. The morphological and metric studies of the Xujiayao teeth expand the variability known for early Late Pleistocene hominin fossils and suggest the possibility that a primitive hominin lineage may have survived late into the Late Pleistocene in China. Am J Phys Anthropol 156:224–240, 2015. © 2014 Wiley Periodicals, Inc.     

重庆巫山玉米洞遗址中–晚更新世鹿科动物化石*

重庆市巫山县庙宇盆地的玉米洞是一处旧石器时代遗址,出土了大量的哺乳动物化石,其中的鹿科动物化石计有3属3种,且均有保存状态较好的角化石,为华南中–晚更新世鹿科化石的研究提供了很好的参考。大赤麂Muntiacus muntjak margae以角的尺寸较大为显著特征,在玉米洞中仅见于中更新世晚期地层中;黑鹿Rusa unicolor的角粗壮、纹饰深,眉枝长且与主枝的夹角为锐角,二者是华南中–晚更新世大熊猫–剑齿象动物群中的常见成员。葛氏斑鹿Cervus (Sika) grayi的角相对纤细、表面纹饰弱、主枝与眉枝夹角为钝角,是在西南地区的首次确切报道。R.unicolor化石标本在玉米洞遗址多数地层可见,而C.(S.) grayi则仅见于代表冰期气候的少数层位中,显示了玉米洞遗址堆积形成时期的古环境波动。     

On glacial refugia,genetic diversity,and microevolutionary processes: deep phylogeographical structure in the endemic newt Lissotriton italicus1

We investigated the phylogeographical patterns of Lissotriton italcus, a newt endemic to the Italian peninsula, aiming to determine why hotspots of intraspecific diversity so ‘hot’. We found two main mitochindrial DNA lineages (net sequence divergence of 6.8% at two fragments of total length of 1897 bp): one restricted to part of the Calabrian peninsula (i.e the southernmost portion of the species range) and the other widespread throughout the rest of the species range. Both lineages, which had a parapatric distribution, showed evidence of further subdivisions, with an overall number of eight terminal haplogroups, most of whose times to the most recent common ancestors were estimated at the Late Pleistocene. Analysis of molecular variance suggested that partitioning populations according to the geographical distribution of these haplogroups can explain 97% of the observed genetic variation. These results suggest that L. italicus underwent repeated cycles of allopatric fragmentation throughout the Pleistocene, and that it likely survived the Late Pleistocene paleoenvironmental changes within eight separate refugia. Thus, the current hotspot of intraspecific diversity of L. italicus (within the Calabrian peninsula) has not been moulded by long‐term stability of large populations but rather by multiple events of allopatric fragmentation and divergence. When compared with the patterns recently identified in other species, these results suggest that the occurrence of phases of allopatric divergence (eventually followed by secondary admixture) could be a common, albeit probably underrated feature in the history of formation of hotspots of intraspecific diversity. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105 , 42–55.     

Late Pleistocene and Holocene chamois in Italy

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India at the cross-roads of human evolution

The Indian palaeoanthropological record, although patchy at the moment, is improving rapidly with every new find. This broad review attempts to provide an account of (a) the Late Miocene fossil apes and their gradual disappearance due to ecological shift from forest dominated to grassland dominated ecosystem around 9-8 Ma ago, (b) the Pliocene immigration/evolution of possible hominids and associated fauna, (c) the Pleistocene record of fossil hominins, associated fauna and artifacts, and (d) the Holocene time of permanent settlements and the genetic data from various human cultural groups within India. Around 13 Ma ago (late Middle Miocene) Siwalik forests saw the emergence of an orangutan-like primate Sivapithecus. By 8 Ma, this genus disappeared from the Siwalik region as its habitat started shrinking due to increased aridity influenced by global cooling and monsoon intensification. A contemporary and a close relative of Sivapithecus, Gigantopithecus (Indopithecus), the largest ape that ever-lived, made its first appearance at around 9 Ma. Other smaller primates that were pene-contemporaneous with these apes were Pliopithecus (Dendropithecus), Indraloris, Sivaladapis and Palaeotupia. The Late Pliocene and Early Pleistocene witnessed northern hemisphere glaciations, followed by the spread of arid conditions on a global scale, setting the stage for hominids to explore “Savanahastan”. With the prominent expansion of grassland environments from East Africa to China and Indonesia in the Pliocene, monkeys and baboons dispersed into the Indian subcontinent from Africa along with other mammals. Though debated, there are several claims of the presence of early hominins in this part of the world during the Late Pliocene, based primarily on the recovery of Palaeolithic tools. Fossils of our own ancestor and one of the first globe-trotters, early Homo erectus, has been documented from the Early Pleistocene of East Africa, Western Asia and Southeast Asia, thus indirectly pointing towards Indian subcontinent as a possible migration corridor between these regions. The only definite pre-Homo sapiens fossil hominin remains come from the Central Narmada Valley and are thought to be of Middle to late Pleistocene age, and the cranium has been shown to be closely linked to archaic Homo sapiens/H. heidelbergensis of Europe. Around ∼74,000 yrs ago, a super volcanic eruption in Sumatra caused the deposition of Youngest Toba Tephra, that covered large parts of the Indian peninsula. Just around this time anatomically-and-behaviorally modern humans or Homo sapiens possibly arrived into India as evidenced by the so called Middle and Upper Palaeolithic assemblages and associated symbolic evidence. The available genetic data reveals that the gene pool to which modern Indians races belong was extremely diverse and had variable mixed links with both European and Asian populations.     

Morphotypic variability of masticatory surface pattern of molars in the recent and Pleistocene Lemmus and Myopus (Rodentia,Cricetidae) of Europe and Western Siberia

In this article, we present the results of morphological study, applying multivariate statistical analysis, of seven samples of recent Lemmini species (Lemmus lemmus, L. sibiricus, Myopus schisricolor) and eight samples of the ancient Siberian lemmings from the Middle and Late Pleistocene localities, mainly in northeastern Europe. On the basis of studying variability of masticatory surface pattern of molars, 24 morphotypes have been described. The differences in morphotypes frequencies were found between the recent Myopus and Lemmus and between the two Norwegian lemming samples. There are some indications of an evolutionary trend in molar morphology of the Siberian lemmings of the Middle, Late Pleistocene, and the recent of Eastern Europe. The distinctions, at least, between the Middle Pleistocene and modern lemmings exceed a species level.     

Mummified fossil of Keteleeria from the Late Pleistocene of Maoming Basin,South China,and its phytogeographical and paleoecological implications

Keteleeria is a small genus of Pinaceae now mainly restricted to eastern Asia. Although this genus has been documented with a wide distribution in the geologic record of Europe, North America, and Asia, its history in low‐latitude areas (including South China) has remained obscure. In this paper, a fossil wood of Keteleeria sp. is described from the Late Pleistocene (29–27 ka BP) of the Maoming Basin, South China. This wood is the most ancient megafossil evidence of Keteleeria within the modern distribution area of this genus. The fossil records of Keteleeria suggests that this thermophyllous genus migrated into South China by the Middle Pleistocene escaping from glacial cooling and became widespread over this region in the Late Pleistocene beginning from the interglacial stage preceding the Last Glacial Maximum. The analysis of growth rings in the fossil wood and its comparison with those of modern Keteleeria davidiana (Bertrand) Beissner indicates that in the Late Pleistocene of Maoming Basin (29–27 ka BP) there was a humid climate with less pronounced seasonality of precipitation than that seen in the subtropical monsoonal climate of modern northeastern Vietnam. Apparently, the Maoming Basin was influenced by interglacial regime with summer–monsoon circulation. The previously proposed method to distinguish between evergreen and deciduous conifers based on growth ring anatomy, is not reliable because of the wide variance and ambiguity in its results.     

Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena,Crocuta crocuta

The living hyena species (spotted, brown, striped and aardwolf) are remnants of a formerly diverse group of more than 80 fossil species, which peaked in diversity in the Late Miocene (about 7–8 Ma). The fossil history indicates an African origin, and morphological and ancient DNA data have confirmed that living spotted hyenas (Crocuta crocuta) of Africa were closely related to extinct Late Pleistocene cave hyenas from Europe and Asia. The current model used to explain the origins of Eurasian cave hyena populations invokes multiple migrations out of Africa between 3.5–0.35 Ma. We used mitochondrial DNA sequences from radiocarbon‐dated Chinese Pleistocene hyena specimens to examine the origin of Asian populations, and temporally calibrate the evolutionary history of spotted hyenas. Our results support a far more recent evolutionary timescale (430–163 kya) and suggest that extinct and living spotted hyena populations originated from a widespread Eurasian population in the Late Pleistocene, which was only subsequently restricted to Africa. We developed statistical tests of the contrasting population models and their fit to the fossil record. Coalescent simulations and Bayes Factor analysis support the new radiocarbon‐calibrated timescale and Eurasian origins model. The new Eurasian biogeographic scenario proposed for the hyena emphasizes the role of the vast steppe grasslands of Eurasia in contrast to models only involving Africa. The new methodology for combining genetic and geological data to test contrasting models of population history will be useful for a wide range of taxa where ancient and historic genetic data are available.     

mtDNA analysis reveals the ongoing speciation on Greek populations of Microtus (Terricola) thomasi (Arvicolidae,Rodentia)

The present article extends our previous work on the phylogenetic history of Microtus (Terricola) thomasi, analysing cytochrome b, 12S rRNA, 16S rRNA and the control region in 65 Greek populations. The analysis revealed three clades: one grouping the populations from Peloponnisos (Southern Greece); the second, the populations from Agios (Ag.) Stefanos and Evvoia island (Central East Greece); and the third, all the remaining populations with no geographical substructure. Genetic distances were low for most populations, with only the populations of Evvoia and Ag. Stefanos being substantially distant. Thus, although this species has a recent colonization history and probably descends from a highly polymorphic ancestor, a monophyletic and highly differentiated lineage is formed in Greece and is distributed in Ag. Stefanos and Evvoia. Molecular differentiation, distinct geographical distribution and restriction of gene flow between this lineage and the rest of the Greek populations provide evidence for its probable subspecific status, Microtus (Tericola) thomasi atticus. A possible mechanism leading the differentiation process of the proposed subspecies is suggested, based on the displacement of this species in central Greece by its congeneric, probably better‐fitted Microtus (Microtus) guentheri and the subsequent separation of Ag. Stefanos and Evvoia from the remaining Greek populations. © 2008 The Linnean Society of London, Biological Journal of the Linnean Society, 2008, 95 , 117–130.     

Pleistocene and Holocene rhinocerotids (Mammalia,Perissodactyla) from the Indochinese Peninsula

Rhinocerotids were abundant and diverse in southern Asia during the Pleistocene and the Holocene epochs, as shown by palaeontological and archaeological discoveries published throughout the last century, whereas the only living rhinoceros in the Indochinese Peninsula is Rhinoceros sondaicus (Cat Loc Reserve, Vietnam). The Pleistocene-Holocene Indochinese rhinocerotid record consists of the extinct species Dicerorhinus gwebinensis (Early Pleistocene, Myanmar) and representatives of the Recent Asian Species Rhinoceros unicornis (Middle-Late Pleistocene), R. sondaicus (Middle Pleistocene-Recent), and Dicerorhinus sumatrensis (Middle Pleistocene-Holocene). This fossil record is synthesized, mapped for Early/Middle/Late Pleistocene and Holocene/Recent times, and then compared with coeval rhinocerotid assemblages from the adjacent areas (South China), subregions (Indian, Sundaic, Philippine, and Wallacean), and region (Palearctic), from a biochronological and biogeographical perspective.     

The fossil fallow deer <Emphasis Type="Italic">Dama geiselana</Emphasis> (Cervidae,Mammalia, upgrade to species level) in the context of migration and local extinctions of fallow deer in the Late and Middle Pleistocene in Europe

The fossil fallow deer Dama dama geiselana Pfeiffer from Neumark-Nord (Saxony-Anhalt, Germany) is upgraded to species level and discussed within the current taxonomy of recent and fossil fallow deer. Typical antler and skeletal characteristics are discussed in comparison with the recent Dama dama, Dama mesopotamica and the fossil species Dama clactoniana, Dama nestii and Dama rhenana. The phylogenetic relationship of fallow deer can be traced back to the Late Pliocene and distinguished morphologically from Cervus elaphus, Cervus nippon and Axis axis. Late and Middle Pleistocene finds from Germany are presented and discussed in the context of the finds from the Mediterranean region and Great Britain. The differences in antler morphology and bone dimensions in West German and North-East German fallow deer from the Late Pleistocene support the hypothesis of different immigration channels, on the one hand from the eastern Mediterranean along the Danube and on the other from the west along the Rhone and Rhine. In the Middle Pleistocene, Dama mesopotamica is considered as the typical fallow deer in the eastern Mediterranean, while in the west, Dama clactoniana is widespread. The hypothesis of immigration from the eastern Mediterranean is supported by the fossil record in Germany with the fallow deer from Edesheim. Conversely, Dama geiselana probably influenced East Mediterranean populations. Special tooth characteristics of Dama geiselana occur with lower frequency in Dama mesopotamica. In the Bronze Age, the fallow deer from Kastanas (Macedonia) shares antler characteristics, the high frequency of specific features of the scapula, and the astragalus with Dama geiselana. A relict population of Dama geiselana probably reached the Eastern Mediterranean at the beginning of the last cold stage.     

Le bassin de l’homme du Pléistocène supérieur de Liujiang, Sud de la Chine : taille du corps, forme du corps et encéphalisation

The Late Pleistocene hominin fossil assemblage from Liujiang, South China include a fairly well-preserved cranium, a right os coxa, a complete sacrum, and other postcranial elements all belonging to a single individual. This rare discovery offers us a unique and singular opportunity in understanding this Late Pleistocene hominin's body proportion and relative cranial capacity (encephalization quotient [EQ]), and also pelvic morphology. Using the available right innominate and its mirror-imaged left side, we reconstruct Liujiang hominin's pelvis. Our analysis of the pelvis indicates that the Liujiang hominin has a very gracile and modern-like pelvic morphology. Indeed, all of the pelvic dimensions are smaller than those of other Pleistocene hominins. Moreover, the pelvic characteristics typical of Middle and Late Pleistocene hominins including Neanderthals cannot be identified in the Liujiang pelvis. In contrast, both Liujiang's metric and non-metric features indicate affinities to more recent human populations including our modern Chinese collections from Guangxi of south China. Further support of this assessment comes from the EQ value of 5.754 for Liujiang which is closer to Minatogawa 2 and modern Chinese populations than to Middle and Late Pleistocene fossil hominins. Our analysis of body shape shows that Liujiang has body proportion (i.e. body height relative to body breadth) typical of warm-adapted populations. Based on these findings, we reason that the modern physical characteristics of Liujiang may allude to a more recent geological age. Alternatively, its morphological “modernity” could also point to a much higher degree of skeletal variation within Late Pleistocene hominins in East Asia.