Molecular markers in breeding for virus resistance in barley

The soil-borne barley yellow mosaic virus disease (BaMMV, BaYMV, BaYMV-2) and the aphid-transmitted barley yellow dwarf virus (BYDV) are serious threats to winter barley cultivation. Resistance to barley yellow mosaic virus disease has been identified in extensive screening programmes and several recessive resistance genes have been mapped, e.g. rym4, rym5, rym9, rym11, rym13. In contrast to barley yellow mosaic virus disease, no complete resistance to BYDV is known in the barley gene pool, but tolerant accessions have been identified and QTL for BYDV-tolerance have been detected on chromosomes 2HL and 3HL. The use of resistance and tolerance in barley breeding can be considerably improved today by molecular markers (RFLPs, RAPDs, AFLPs, SSRs, STSs, SNPs), as they facilitate (i) efficient genotyping and estimation of genetic diversity; (ii) reliable selection on a single plant level independent of symptom expression in the field (iii) acceleration of back crossing procedures; (iv) pyramiding of resistance genes; (v) detection of QTL and marker-based combination of positive alleles; and (vi) isolation of resistance genes via map-based cloning.     

Endophytic fungus decreases plant virus infections in meadow ryegrass (Lolium pratense)

We studied the effects of fungal endophyte infection of meadow ryegrass (Lolium pratense=Festuca pratensis) on the frequency of the barley yellow dwarf virus (BYDV). The virus is transferred by aphids, which may be deterred by endophyte-origin alkaloids within the plant. In our experiment, we released viruliferous aphid vectors on endophyte-infected and endophyte-free plants in a common garden. The number of aphids and the percentage of BYDV infections were lower in endophyte-infected plants compared to endophyte-free plants, indicating that endophyte infection may protect meadow ryegrass from BYDV infections.     

Brome Mosaic Virus Infection Mimics, Barley Yellow Dwarf Virus Disease Symptoms in Small Grains

Previous studies on the occurrence of “barley yellow dwarf virus (BYDV) disease” in South Africa have led to the conclusion that, although this virus is present, the main causative agent of “yellow dwarf” disease in cereals appears to be the unrelated brome mosaic virus (BMV). In this study, material from South Africa, Britain and Australia that had been identified symprtomatically as being infected with BYDV, was found by serological testing to contain BMV. No BYDV could be detected in the same samples. This report discusses the hazards of relying on symptom expression for the diagnosis of a common world-wide disease problem.     

Increased sensitivity of detection of plant viruses obtained by using a fluorogenic substrate in enzyme-linked immunosorbent assay

The fluorogenic substrate 4-methylumbelliferyl phosphate (MUP) of alkaline phosphatase was compared with the chromogenic substrate p-nitrophenyl phosphate (NPP) in tests for plant viruses by enzyme-linked immunosorbent assay (ELISA). In tests on leaf extracts of squash infected with prune dwarf virus, Chenopodium quinoa and apple infected with apple mosaic virus (ApMV), and potato infected with potato leafroll virus (PLRV), MUP increased sensitivity 2–16 times, the smallest and greatest increases being obtained with ApMV (in apple) and PLRV respectively. In similar tests on 21 dormant PLRV-infected potato tubers, sensitivity was increased 2–4 times with 13 tubers, but the two substrates gave the same detection end-points with eight tubers. When individual seeds of potato plants infected with the Andean potato calico strain of tobacco ringspot virus were tested, the virus was detected in virtually all seeds by MUP-ELISA, but detection by NPP-ELISA was inefficient unless absorbance values were measured after overnight incubation at 4 °C, instead of after 2 h at room temperature. In tests on Myzus persicae carrying PLRV and Sitobion avenae carrying barley yellow dwarf virus (BYDV), both viruses were consistently detected in a greater proportion of individual aphids by MUP-ELISA than NPP-ELISA irrespective of whether incubation was for 2 h at room temperature or overnight at 4 °C. The effeciency of detection of virus in single viruliferous aphids by MUP-ELISA was not decreased by grouping with one or four non-viruliferous aphids but was decreased (PLRV) or greatly decreased (BYDV) by grouping with nine. MUP-ELISA and transmission tests to Physalis floridana seedlings (2–3 day inoculation access periods) both detected PLRV in most individual M. persicae, but the results obtained with the two methods did not correlate completely. In similar tests for BYDV in individual S. avenae, virtually all aphids transmitted BYDV to oat seedlings during a 3-day inoculation access period but it was subsequently detected by MUP-ELISA in less than half of them. By contrast, MUP-ELISA detected PLRV in most viruliferous M. persicae even after they had fed for 3 days on Chinese cabbage, a non-host for this virus.     

Insect infestations, incidence of viral plant diseases, and yield of winter wheat in relation to planting date in the northern Great Plains

Planting date effects on arthropod infestation and viral plant disease are undocumented for winter wheat, Triticum aestivum L., in South Dakota and the northern Great Plains. Winter wheat was planted over three dates (early, middle, and late; generally from late August to late September) to determine the effect on abundance of insect pests, incidence of plant damage, incidence of viral plant disease, and grain yield. The study was conducted simultaneously at two sites in South Dakota over three consecutive cropping seasons for a total of six site yr. Cereal aphids (Homoptera: Aphididae) were abundant in three site yr. Rhopalosiphum padi (L.), bird cherry-oat aphid, was the most abundant cereal aphid at the Brookings site, whereas Schizaphis graminum (Rondani), greenbug, predominated at Highmore. Aphid-days were greater in early versus late plantings. Aphid abundance in middle plantings depended on aphid species and site, but it usually did not differ from that in early plantings. Incidence of Barley yellow dwarf virus (family Luteoviridae, genus Luteovirus, BYDV) declined with later planting and was correlated with autumnal abundance of cereal aphids. Incidence of BYDV ranged from 24 to 81% among 1999 plantings and was < 8% in other years. Damage to seedling wheat by chewing insects varied for two site-years, with greater incidence in early and middle plantings. Wheat streak mosaic virus, spring infestations of cereal aphids, wheat stem maggot, and grasshoppers were insignificant. Yield at Brookings was negatively correlated with BYDV incidence but not cereal aphid abundance, whereas yield at Highmore was negatively correlated with aphid abundance but not BYDV incidence. Planting on 20 September or later reduced damage from chewing insects and reduced cereal aphid infestations and resulting BYDV incidence.     

Aphid Vectors of Barley Yellow Dwarf Virus in West-Central Morocco

The ability of seven aphid species, collected in west-central Morocco, to transmit barley yellow dwarf virus (BYDV) was determined. Aphids were either collected from grasses showing symptoms of BYDV infection or were allowed acquisition access to plants infected with a PAV-like isolate of BYDV before transfer to oat test plants. BYDV transmission by six of the seven aphid species was confirmed by ELISA test; only Melanaphis donacis failed to transmit. The six newly defined BYDV vector species brings the total known to occur in Morocco to ten.     

Virus Resistance in Cereals: Sources of Resistance, Genetics and Breeding

In cereals, soil-borne viruses transmitted by the plasmodiophorid Polymyxa graminis (e.g., Barley mild mosaic virus , Barley yellow mosaic virus or Soil-borne cereal mosaic virus ), have increased in importance due to the increase of the acreage infested and because yield losses cannot be prevented by chemical measures. Due to global warming, it is also expected that insect transmitted viruses vectored by aphids (e.g., Barley yellow dwarf virus , Cereal yellow dwarf virus ), leafhoppers ( Wheat dwarf virus ) or mites (e.g., Wheat streak mosaic virus ), will become much more important even in cooler regions. The environmentally most sound and also most cost effective approach to prevent high yield losses caused by these viruses is breeding for resistance. Therefore, in contrast to other reviews on cereal viruses, this study briefly reviews present knowledge on cereal-infecting viruses and emphasizes especially the sources of resistance or tolerance to these viruses and their use in molecular breeding schemes.     

Winter wheat (Triticum aestivum) response to Barley yellow dwarf virus at various nitrogen application rates in the presence and absence of its aphid vector,Rhopalosiphum padi

Barley yellow dwarf (BYD) is one of the most common diseases of cereal crops, caused by the phloem‐limited, cereal aphid‐borne Barley yellow dwarf virus (BYDV) (Luteoviridae). Delayed planting and controlling aphid vector numbers with insecticides have been the primary approaches to manage BYD. There is limited research on nitrogen (N) application effects on plant growth, N status, and water use in the BYDV pathosystem in the absence of aphid control. Such information will be essential in developing a post‐infection management plan for BYDV‐infected cereals. Through a greenhouse study, we assessed whether manipulation of N supply to BYDV‐infected winter wheat, Triticum aestivum L. (Poaceae), in the presence or absence of the aphid vector Rhopalosiphum padi L. (Hemiptera: Aphididae), could improve N and/or water uptake, and subsequently promote plant growth. Similar responses of shoot biomass and of water and N use efficiencies to various N application rates were observed in both BYDV‐infected and non‐infected plants, suggesting that winter wheat plants with only BYDV infection may be capable of outgrowing infection by the virus. Plants, which simultaneously hosted aphids and BYDV, suffered more severe symptoms and possessed higher virus loads than those infected with BYDV only. Moreover, in plants hosting both BYDV and aphids, aphid pressure was positively associated with N concentration within plant tissue, suggesting that N application and N concentration within foliar tissue may alter BYDV replication indirectly through their influence on aphid reproduction. Even though shoot biomass, tissue N concentration, and water use efficiency increased in response to increased N application, decision‐making on N fertilization to plants hosting both BYDV and aphids should take into consideration the potential of aphid outbreak and/or the possibility of reduced plant resilience to environmental stresses due to decreased root growth.     

Transmission of barley yellow dwarf virus by field collected aphids (Homoptera: Aphididae) and their relative importance in barley yellow dwarf epidemiology in southwestern Idaho

Populations of cereal aphids were sampled from 1985–1988 and assayed for transmission of barley yellow dwarf virus (BYDV), Rhopalosiphum padi, Rho-palosiphum maidis, Sitobion avenae, Metopolophium dirhodum, Schizaphis graminum and Macrosiphum euphorbiae collected from host plants transmitted BYDV in bioassays. Of the 1028 Diuraphis noxia collected from plants, one may have transmitted BYDV. The isolate involved resembled SGV in serological and biological characteristics, but since it was not recoverable by any of more than 800 D. noxia subsequently tested, we suspect it may have been a contaminant. Among those aphids collected during the autumn from a suction trap adapted for live collection, R. padi transmitted BYDV most frequently. Other trapped species which transmitted BYDV included: R. maidis, Rhopalosiphum insertum, Macrosiphum euphorbiae, Metopolophium dirhodum and Ceruraphis eriophori. An adapted Infectivity Index indicated that R. padi is by far the most important vector of BYDV during the autumn sowing season in southwestern Idaho. Male R. padi consistently transmitted BYDV more frequently than did females collected during the same period.     

Cereal aphids and the infectivity index for barley yellow dwarf virus (BYDV) in northern England

Suction traps at Leeds University Farm, N. Yorkshire, monitored aerial populations of cereal aphids over three autumns. Different migration patterns were observed between the four main species, Sitobion avenae, Metopolophium dirhodum, Rhopalosiphum padi and R. insertum. The relevance of these patterns to the epidemiology of barley yellow dwarf virus (BYDV) is discussed. Transmission tests revealed S. avenae to be the major vector of BYDV, rather than R. padi, which is responsible for disease outbreaks in the south and west of Britain. An Infectivity Index (II) of 50 has been advocated for R. padi-transmitted BYDV, above which economic damage is likely to occur. This value is shown not to be applicable to the Vale of York, and methods of adapting the data are proposed. Such adjusted II values depend on the behaviour and reproduction of the aphids during the transmission tests, and produce II values that correlate well with levels of field infection in the area.     

Taxonomic patterns in the host ranges of viruses among grasses, and suggestions on generic sampling for host-range studies

Analyses of published host-range data for certain viruses reveal correlations with taxonomic groupings of grasses. Barley yellow dwarf virus (BYDV), cocksfoot mottle and phleum mottle viruses are found to have infected greater proportions of the festucoid grasses than of the non-festucoids to which they were inoculated. By contrast, all strains of sugarcane mosaic virus (SCMV) and of the closely related maize dwarf mosaic virus (MDMV) infected more non-festucoids than festucoids. In addition, infected plants from grass groups containing higher concentrations of genera susceptible to BYDV, SCMV and MDMV usually show clear symptoms, whereas infected plants from less susceptible groups are frequently symptomless. Some viruses, such as barley stripe mosaic, brome mosaic, cocksfoot streak and ryegrass mosaic, show no apparent preferences for particular grass groups. Samples of grasses employed in host-range studies are usually strongly biased towards festucoids. It is suggested that viruses ought to be adequately tested against genera from all the major groups, and a classified list of grass genera suitable for host-range studies is provided.     

Nucleotide sequence of beet western yellows virus RNA.

The nucleotide sequence of the genomic RNA (5641 nt) of beet western yellow virus (BWYV) isolated from lettuce has been determined and its genetic organization deduced. The sequence of the 3'terminal 2208 nt of RNA of a second BWYV isolate, obtained from sugarbeet, was also determined and was found to be very similar but not identical to that of the lettuce isolate. The complete sequence of BWYV RNA contains six long open reading frames (ORFs). A cluster of three of these ORFs, including the coat protein cistron, display extensive amino acid sequence homology with corresponding ORFs of a second luteovirus, the PAV isolate of barley yellow dwarf virus (BYDV) (1,2). The ORF corresponding to the putative viral RNA-dependant RNA polymerase, on the other hand, resembles that of southern bean mosaic virus. There is circumstantial evidence that expression of the BWYV RNA polymerase ORF may involve a translational frameshift mechanism. The ORF immediately following the coat protein cistron may be translated by in-frame readthrough of the coat protein cistron amber termination codon. Similar mechanisms have been proposed for expression of the corresponding ORFs of BYDV(PAV) (1).     

Effects of fungicides and insecticides applied to spring barley sown on different dates in 1976-79

Factorial experiments in 1976–1979 investigated the effects of sowing date, fungicides (ethirimol seed treatments and tridemorph sprays) and insecticides (phorate applied to the soil, and menazon or dimethoate sprays) on powdery mildew, aphids, barley yellow dwarf virus (BYDV) and grain yield of spring barley (cv. Julia in 1976 and 1977; cv. Wing in 1978 and 1979). Late sowing usually increased the severity of powdery mildew, numbers of aphids and incidence of BYDV and generally decreased yield. Responses to pesticides were commonly greater on the late-sown than on the early-sown barley. Response to fungicides are principally attributed to the control of powdery mildew (Erysiphe graminis f. sp. hordei; the target species) but responses to insecticides cannot be attributed to virus control and seem unlikely to be due solely to control of aphids, whose numbers were relatively small. There were some effects of fungicides on aphids and insecticides on mildew, but they were inconsistent and too small to affect crop protection strategies.     

The occurrence of barley yellow dwarf viruses in CIMMYT bread wheat nurseries and associated cereal crops during 1988–1990

Enzyme-linked immunosorbent assay (ELISA)-based surveys of the occurrence of five barley yellow dwarf virus (BYDV) serotypes (MAV, PAV and SGV in “Group 1”; RPV and RMV in “Group 2”) in CIMMYT bread wheat nurseries and other small grain crops in various locations world-wide were undertaken in 1988, 1989 and 1990. The objective was to investigate the relative occurrence of BYDV serotypes in areas relevant to CIMMYT cereal breeding programs. Overall, MAV and PAV serotypes predominated in the samples collected, though their relative frequencies depended on the location. SGV serotypes were uncommon in most locations. Group 2 serotypes occurred widely, but RMV serotypes were more common than RPV serotypes.     

Barley Yellow Dwarf Virus Multiplication and Host Plant Tolerance in Durum Wheat

A Canadian PAV-like isolate of barley yellow dwarf virus (BYDV) was used to infect durum wheat (Triticum durum) cultivars previously identified in field trials involving artificial inoculation as highly sensitive (12 IDSN74), slightly tolerant (La Dulce), and relatively tolerant (Boohai and 12 IDSN227) to BYDV. The cultivars were inoculated in the greenhouse as seedlings, and indexed for virus accumulation by enzyme-linked immunosorbent assay (ELISA) at various intervals between 3 and 60 days thereafter. Mean ELISA values were somewhat consistent with tolerance levels for 4 durum wheat cultivars, but the use of ELISA to screen for BYDV resistance in durum wheat is not practical. The magnitude of the difference between sensitive and tolerant cultivars for the mean ELISA value is not high enough, and it may be necessary to average readings between 3 and 60 days after inoculation to obtain somewhat meaningful ELISA data. The effect of vector aphid numbers on virus titre and aerial biomass in the sensitive durum wheat cv. Karim was also evaluated. There was no significant effect on virus content in a preliminary trial, but a second trial revealed that more viruliferous aphids per plant resulted in higher ELISA values. Infestation with 32 or 50 viruliferous Rhopalosiphum padi per plant depressed biomass yield below the level observed with 1–10 aphids per plant.     

The effect of increasing dosage of barley yellow dwarf virus on some resistant and susceptible barleys

Five spring barleys, grown either in pots out of doors or in the field, were inoculated with barley yellow dwarf virus (BYDV) using 5, 10, 20 or 50 infective aphids (Rhopalosiphum padi) per plant. Control plants of each variety received no aphids. Infection with all aphid numbers had highly significant adverse effects on all varieties except Cb 1029, an early maturing BYDV-resistant barley of Ethiopian origin. 12583 Co, a locally bred, late maturing barley possessing the same resistance gene as Cb 1029 suffered more in a pot experiment, but less than three susceptible varieties all of which were severely damaged even when few infective aphids were used. Progressive effects with increasing aphid numbers, indicative of dosage response, occurred in some varieties. These effects included delay in heading and increased stunting, but not less yield. In Cb 1029, BYDV infection caused a reduction in the number of heads per plant, but this was partly compensated for by an increase in the number of grains per head. Conversely, BYDV infection in 12583 Co caused an increase in the number of heads, partly offset by a decrease in the number of Brains tier head.     

The relationship between growth rate and the expression of tolerance to barley yellow dwarf virus in barley

Barley varieties were most tolerant to infection with barley yellow dwarf virus (BYDV) when they grew rapidly, whether the rate of growth was determined by manipulation of the environment or by the innate genetic constitution of the host. A specific, incompletely dominant gene conditioning a high level of tolerance to the virus in certain rapidly growing genotypes in which it occurred naturally, failed to do so when transferred to slower growing genotypes. However, reintroduction into genotypes capable of rapid growth led to full restoration of the gene's effectiveness. Virus-free aphids recovered BYDV less readily from quick- than from slow-growing genotypes, all homozygous for the tolerance gene.