DNA, RNA, protein and heterochromatin changes during embryo development and germination of soybean (Glycine max L.)

DNA, RNA, protein and heterochromatin were measured cytophotometrically in developing soybean (Glycine max) seeds. The average 2C DNA content for the soybean genome was 2.64 pg. The amounts of nuclear DNA in embryo axes showed no significant change during embryo development, whereas the DNA content in cotyledon nuclei increased significantly from 3.58 pg to 5.49 pg. The number of endopolyploid nuclei increased from 26% to 48% and the DNA content from 4.45 to 5.49 pg after cessation of cell division. The changes in RNA and protein content during embryo development were in general similar to those in DNA content. This can be interpreted that increased DNA levels in soybean cotyledons generated during embryogeny increase the protein synthesizing capacity. During the first 15 days of germination, the number of endopolyploid nuclei in cotyledons declined from 46% to 4%, and this decline is interpreted as DNA degradation providing a ready source of nucleosides and phosphates during early embryo growth. A later decline, however, between 15 and 20 days after germination, was age related similar to leaf senescence, because the percentage of endopolyploid nuclei remained unchanged while the number of non-viable cells increased. In senescing cotyledons, 73% and 80% of RNA and protein but only 20% of DNA were lost, as compared to dormant cotyledons. The heterochromatin (condensed chromatin) measurements indicated that nuclei of metabolically inactive dormant and senescent cotyledon nuclei contained an average of 33% more heterochromatin than nuclei from the green cotyledons of seedlings.     

The differential replication of DNA during plant development

The percentage of satellite DNA, as defined by neutral CsCl equilibrium centrifugation, varied in different tissues of a plant. Satellite DNA formed a higher percentage of the genome in meristematic tissues (seed, root tip) than in mature, differentiated tissues (fruit, leaf, cotyledon). The buoyant density of the satellite peak, and in some cases of the mainband, also varied significantly between seed and fruit tissue. This variation in the percentage of satellite DNA was correlated with a difference in the heterochromatin content of nuclei from cucumber root tips and fruit. The fruit contained at least two classes of polyploid nuclei, differing in their heterochromatin content.     

DNA changes during sequential leaf senescence of tobacco (Nicotiana tabacum)

Age related DNA changes in tobacco (Nicotiana tabacum) leaf nuclei were investigated by Feulgen cytophotometry, thermal denaturation, renaturation, and DNA-DNA hybridization studies during sequential leaf senescence. Cytophotometric Feulgen-DNA comparison measurements between young and senescing nuclei displayed 18% reduction in Feulgen-DNA values, with a corresponding decrease in nuclear area in senescing nuclei. Hydrolysis kinetics indicated that the loss was not due to compactness of the DNA as the curves for older nuclei were consistently lower than curves generated from younger nuclei. DNA loss in senescing nuclei was associated with a decrease in euchromatin or shift from euchromatin to facultative heterochromatin. Purified DNA from young and senescing leaf nuclei did not display different thermal profiles nor did hydroxylapatite chromatography reassociation curves. DNA-DNA hybridization in free solution from young and senescing leaf DNA performed by a Gilford thermo-programmer system indicated that DNA of senescing tobacco nuclei reassociated more slowly than DNA from young nuclei and the mixture of young and senescing leaf DNA displayed intermediate reassociation values. The study indicates that the DNA changes during senescence involve a complex phenomenon which includes the possibility of small single strand nicks undetectable by thermal denaturation, and a loss of small double strand fragments which were detectable only by precise DNA-DNA free solution reassociation and not by hydroxylapatite chromatography reassociation.     

Repetitious DNA in some Anemone Species

The DNA from several Anemone species, which contain different amounts of heterochromatin as revealed by Giemsa staining, was analysed by ultra-centrifugation and renaturation. No satellite band was observed in any of the samples centrifuged in cesium chloride gradients. Renaturation studies showed the presence of repetitive sequences. The proportion of repetitive DNA per genome varied from 53% to 67% and did not correlate with either the DNA content per cell or the relative amount of heterochromatin.     

Ultrastructure of meristematic cells of dormant and released buds in Tradescantia paludosa

The lateral bud meristems of Tradescantia paludosa show a characteristic cytohistological zonation during dormancy. The cells comprising this so called ‘zone of inhibition’, which is located at the extreme tip of the bud apex, rarely synthesize nuclear DNA or undergo mitotic division. These nuclei are as large as prophase nuclei, yet contain only telophase (2C) amounts of DNA and significantly lower amounts of histone as compared to the 2C nuclei of the actively dividing cells.Ultrastructural observations of the nuclei in the ‘zone of inhibition’ show that a large proportion of the chromatin is organized as less condensed, diffuse, euchromatin fibrils; however, the chromatin of the actively dividing nuclei of the cells outside the ‘zone of inhibition’ or in the released bud meristems is organized to a greater extent as condensed clumps of heterochromatin. When the dormancy is released, the nuclei in the ‘zone of inhibition’ synthesize DNA and histone and undergo cell division in approx. 4 days. Striking changes in the organization of chromatin fibrils take place during this transition period. The diffuse chromatin fibrils of the nuclei in the ‘zone of inhibition’ progressively become more and more condensed as the cell prepares to undergo the first mitotic division after the release of dormancy. This change which is coupled with the synthesis of histones in the nuclei of the ‘zone of inhibition’ suggests a prominent structural role of these basic proteins in the organization of the chromatin. The large volume of 2C nuclei of the ‘zone of inhibition’ seems, therefore, to result not from a great nuclear mass, but probably from a relatively small degree of condensation of chromatin.     

Heterochromatin diversity in Cymbidium, and its relationship to differential DNA replication

1. 1. DNA was extracted from aseptical cultures of protocorms of the orchid Cymbidium and analysed by thermal denaturation. The denaturation profiles revealed an AT-rich fraction of about 18% of total DNA.

2. 2. Mitotic chromosomes and diploid and endopolyploid nuclei of in vitro cultured protocorms and root tips were differentially stained with quinacrine (Q), 33258 Hoechst (H) and a novel compound 4′-6-diamidino-2-phenylindole (DAPI) [10], as well as by the Giemsa C-banding technique. The centromeric regions display very bright fluorescence with all three fluorochromes and stain intensely following the Giemsa procedure. It is proposed that the AT-rich fraction of the Cymbidium DNA is located within the centromeric heterochromatin.

3. 3. In interphase nuclei differential Q, H, and DAPI fluorescence both within and between the chromocenters occurs. In nuclei with enlarged chromocenters, i.e. with amplified DNA in heterochromatin [2], the increased size of chromocenters is mainly caused by enlargement of the less brightly fluorescing fractions of the heterochromatin. The proportion of the very brightly fluorescing heterochromatin is similar in all nuclei (about 7%).

4. 4. A comparison of nucleolar size and differential Giemsa staining of the nucleolus organizers showed that there is no disproportional increase of nucleoli and nucleolus organizing heterochromatin during endopolyploidization. That means, there is no indication for amplification of ribosomal DNA.

5. 5. Electron micrographs particularly of heterochromatin-rich nuclei revealed areas of different chromatin density within and between the chromocenters. However, the differences in fiber packaging density are much smaller than the observed differences in fluorescence brightness.

6. 6. The data obtained are interpreted as evidence for differential replication of AT-rich and non-AT-rich heterochromatin. It is suggested that DNA amplification [2, 4] is restricted to a non-AT-rich component which apparently is located neither in the brightly fluorescent centromeric nor in the nucleolus-associated heterochromatin.

     

A histological and histochemical study of the cotyledons ofPhaseolus vulgaris L. during germination

Summary The cotyledon ofPhaseolus vulgaris L. comprises four tissues: epidermis, abaxial hypodermis, storage parenchyma, and procambium. A complex intercellular space system is present throughout the storage tissue and comprises about 16% of the cotyledon volume. All the cells contain protein bodies, and the hypodermis and storage parenchyma also contain starch grains. The epidermal cells are at the 2 C level of DNA, those of the hypodermis at the 4 C level, and the storage cells vary from 8 C to 32 C. During germination stomata differentiate in the epidermis. Reserve mobilization begins in the cells furthest from the epidermis and from the vascular tissue. Protein is removed from these cells with little or no coalescence of protein bodies. The DNA content of the nuclei decreases. The cell walls swell and then decrease in thickness as material is removed. Finally the nuclei and cytoplasm disappear and the cells collapse. In the cells near vascular bundles the protein bodies coalesce before losing their protein. The DNA content of the nuclei declines but nuclei and cytoplasm are still present at abscission. These cells do not collapse. Cytoplasmic RNA content is highest near the abaxial surface. Most of the RNA is removed during the first three days of germination.     

Cytoplasmic membrane senescence in bean cotyledons

Distinguishable patterns of cytoplasmic membrane senescence in cotyledon tissue of Phaseolus vulgaris have been elucidated by examining the behavior of four microsomal enzymes—NADH-cytochrome C reductase, NADPH-cytochrome C reductase, glucose-6-phosphatase and 5′-nucleotidase during germination. For young cotyledon tissue, specific activities for the phosphatases were similar for rough and smooth microsomal fractions, but both cytochrome C reductases were 2–3 times more concentrated in the smooth fraction. These proportionalities changed with increasing age. As senescence becomes more intense the enzyme activities change independently of one another. These changes do not appear to be influenced by the presence or absence of ribosomes on the membranes. Parallel analyses of phospholipid levels in the isolated fractions revealed that loss of microsomal enzyme activity correlates with an ultimate dismantling of the membranes into their macromolecular constituents. The data have been interpreted as indicating that functionally distinct membranes or regions of the same membrane are differentially sensitive to senescence.     

Nuclear and cell fusion cause polyploidy in the megagametophyte of common cypress, Cupressus sempervirens L.

In common cypress, Cupressus sempervirens L., the megagametophyte persists in mature seeds as a polyploid endosperm containing cells with even and odd series of DNA contents: 1C, 2C, 3C, 4C, 5C etc., where C is the amount of DNA in the haploid genome. In this study, cytometrical, histological and cytochemical investigations were performed in order to determine the behavior of megagametophyte nuclei during the reproductive cycle. Unexpected nuclear alterations due to a continuous process of nuclear fusion were observed in the megagametophyte, leading to polyploidization and consequently to intense food-reserve synthesis. During the free nuclear stage, the megagametophyte exhibited only sporadic nuclear fusion and limited food-reserve production. When cellularization took place, multinucleated compartments were observed in which nuclei fused, producing odd and even series of DNA contents as proved by flow-cytometric analysis. This polyploidization process considerably increased after fertilization and during embryo development, and was accompanied by increased food-reserve synthesis. During these later stages, fusion mainly involved nuclei of contiguous cells and was preceded by the disintegration of their adjacent walls. Mitoses with incomplete phragmoplast differentiation were also observed to yield polyploid nuclei. Finally, in mature seeds the endosperm still exhibited multinucleate cells and fusion nuclei, and contained high amounts of storage products. The results are interpreted as an alteration of DNA contents in the megagametophyte cells in relation to specific metabolic activity during seed development. Received: 2 September 1998 / Accepted: 31 December 1998     

花生ABI3同源基因的定位分析

ABSC ISIC AC ID-INSITIVE3(AB I3)、LEAFY COTYLEDON2(LEC2)和FUSCA3(FUS3)转录因子在种子发育过程中发挥着重要的调控作用。采用Northern杂交技术,用拟南芥AB I3保守的B3结构域部分序列作为探针分别与花生根、茎、叶、子叶RNA进行了杂交,同时也对花生根、茎、叶、子叶(含胚)组织切片进行了原位杂交,结果均显示只有在花生的子叶和胚中有杂交信号出现,表明花生中可能存在AB I3、FUS3和LEC2的同源基因,且它们只分布在花生的子叶和胚中。     

Cytogenetic studies in the genus Zea

Summary The nuclear DNA amount and the heterochromatin content in species and hybrids of Zea were analyzed in telophase nuclei (2C) of the root apex of germinating seeds. The results revealed significant differences among taxa and also among lines and races of maize. The hybrids between Z. mays ssp. mays x Z. mays ssp. mexicana (2n=20), Z. diploperennis x Z. perennis (2n=30), and Z. diploperennis x Z.perennis (2n=40) showed DNA content intermediate between that of the parents. The number of chromosomal C-bands and the proportion of the genome comprising C-band heterochromatin were positively related to genome size. In the different lines and races of maize studied, there was a positive correlation between genome size and the interval from germination to flowering. Octoploid Z. perennis (2n=40) showed the smallest DNA content per basic genome and the smallest heterochromatic blocks, suggesting that the DNA lost by this species consisted mainly of repetitive sequences. Considering that the extant species of Zea are tetraploid (2n=20) and octoploid (2n=40) and that the ancestral diploids are extinct, any consideration of the direction (increase or decrease) of the DNA change would be entirely speculative. The extant species could be the product of natural and artificial selection acting on different genotypic and nucleotypical constitutions at the diploid and/or tetraploid levels.     

DNA content, interphase AgNOR-area, number of 3 HrDNA hybridization signals and the methylation level in coding rDNA sequence in different organs of Lupinus luteus L.

Nuclear DNA and AgNOR-area quantity have been measured cytophotometrically, the number of silver grains afterin situ ³H rDNA/DNA hybridization has been counted, and the level of rDNA methylation has been estimated in root meristems, differentiated root zones, hypocotyls, cotyledons, and leaves of 7-day-old seedlings ofLupinus luteus. DNA content increases by endoreplication, reaching the average DNA C-value of 4.2 in the meristem, 6.6C in hypocotyl, 15.9C in cotyledon, and 3.3C in leaf. The quantity of AgNOR-area, the highest in root meristem, does not follow DNA C-value. Number of grains afterin situ ³H rDNA/DNA hybridization corresponds to DNA amount, but their distribution differs, showing in many cases perinucleolar localization in organs displaying low AgNOR-area quantity. Southern hybridization has not demonstrated detectable changes in level rDNA methylation. We suggest that the low level of rDNA expression in non-meristematic tissues could be related to rDNA inactivation caused by its translocation into nucleolus-associated heterochromatin.     

Thoracic underreplication in Drosophila species estimates a minimum genome size and the dynamics of added DNA

Many cells in the thorax of Drosophila were found to stall during replication, a phenomenon known as underreplication. Unlike underreplication in nuclei of salivary and follicle cells, this stall occurs with less than one complete round of replication. This stall point allows precise estimations of early-replicating euchromatin and late-replicating heterochromatin regions, providing a powerful tool to investigate the dynamics of structural change across the genome. We measure underreplication in 132 species across the Drosophila genus and leverage these data to propose a model for estimating the rate at which additional DNA is accumulated as heterochromatin and euchromatin and also predict the minimum genome size for Drosophila. According to comparative phylogenetic approaches, the rates of change of heterochromatin differ strikingly between Drosophila subgenera. Although these subgenera differ in karyotype, there were no differences by chromosome number, suggesting other structural changes may influence accumulation of heterochromatin. Measurements were taken for both sexes, allowing the visualization of genome size and heterochromatin changes for the hypothetical path of XY sex chromosome differentiation. Additionally, the model presented here estimates a minimum genome size in Sophophora remarkably close to the smallest insect genome measured to date, in a species over 200 million years diverged from Drosophila.     

Flow cytometric measurement of nuclear DNA content inCapsicum (Solanaceae)

Nuclei were isolated from leaf tissue of differentCapsicum species and the relative fluorescence intensity was measured by flow cytometry after propidium iodide staining.Pisum sativum nuclei with known nuclear genome size (9.07 pg) were used as internal standard to determine nuclear DNA content of the samples in absolute units. The 2C DNA contents ranged between 7.65 pg inC. annuum and 9.72 pg inC. pubescens, and the general mean of the genus was 8.42 pg. These values correspond, respectively, to 1C genome size of 3.691 (C. annuum), 4.690 (C. pubescens) and 4.063 (general mean) Mbp. In general, white-flowered species proved to have less DNA, with the exception ofC. praetermissum, which displayed a 2C DNA content of 9.23 pg. It was possible to divide the studied species into three main groups according to their DNA content, and demonstrate differences in DNA content within two of the three species complexes established on the basis of morphological traits.     

Flow cytometric analysis of nuclear genome of the Ethiopian cereal tef [Eragrostis tef (Zucc.) Trotter]

Flow cytometric analysis of nuclear DNA content was performed by using nuclei isolated from young leaf tissue of tef (Eragrostis tef). The method was very useful for rapid screening of ploidy levels in cultivars and lines of tef representing the phenotypic variability of this species in Ethiopia. The results of the analysis showed that all cultivars were tetraploid. Flow cytometry was also used to determine nuclear DNA content in absolute units (genome size) in four tef cultivars. Nuclei isolated from tomato (Lycopersicon esculentum, 2C=1.96 pg) were used as an internal reference standard. The 2C DNA content of individual tef cultivars ranged from 1.48 to 1.52 pg (1C genome size: 714 Mbp-733 Mbp), the differences among them being statistically nonsignificant. The fact that the nuclear genome of tef is only about 50% larger than that of rice should make it amenable for analysis and mapping at the molecular level.     

Relation between Nitrogen and Ribulose-1,5-bisphosphate Carboxylase in Rice Leaves from Emergence through Senescence

The relation between N content and ribulose-l,5-bisphosphate(RuBP) carboxylase protein was examined in the 12th leaf bladeof rice. Plants were grown under different amounts of N afterthe emergence of the 12th leaf blade. RuBP carboxylase proteinincreased with leaf N during leaf expansion. The synthesis ofRuBP carboxylase predominated during this period, and changesin the amounts of carboxylase synthesized until leaf death paralleledchanges in the N influx to the leaves. When the carboxylasereached its maximum content, the proportion of RuBP carboxylaseto leaf N was 27 to 28% irrespective of N treatment. As theleaf senesced, however, this proportion differed significantlywith the treatment. It was higher in the N-deficient leaf thanin the N-sufficient leaf. This was due to different patternsof RuBP carboxylase degradation for the treatments during senescence.RuBP carboxylase was degraded actively during the early stageof senescence in the N-sufficient leaf, whereas its degradationproceeded almost constantly in the N-deficient leaf during senescence. (Received October 17, 1983; Accepted January 27, 1984)     

QUANTITATIVE CHANGES IN NUCLEAR DNA ACCOMPANYING POSTGERMINATION EMBRYONIC DEVELOPMENT IN VANDA (ORCHIDACEAE)

Nuclear DNA was measured cytophotometrically in sections and isolated nuclei of the developing embryo of Vanda. The data were interpreted in terms of developmental stage and spatial relationships of the nuclei within the embryo. An equal amount of DNA was found in all meristematic nuclei regardless of the developmental stage of the embryo and was taken as the 2C value. Most of the nuclei in the parenchymatous region fell into the discrete DNA classes, 2C, 4C, and 8C. A significant number, however, had DNA contents above 8C but could not be grouped into classes based on a whole-number multiple of 2C. Nuclear size was found to vary in direct proportion to DNA content through 8C. Above 8C, correlation between nuclear size and DNA content was poor. The amount of DNA in the nuclei of the parenchymatous region was shown to increase in direct proportion to the distance of the nucleus from the meristem. The average amount of DNA in parenchymal nuclei above 8C was found to increase with the developmental stage of the embryo. Mechanisms which might account for the observed changes in DNA per nucleus are discussed.     

Genome size and heterochromatin variation in rodents

Nuclear DNA amounts are determined in 16 species and the C-banding patterns for 19 species of rodents. A list of rodent DNA amounts is compiled. The fraction of heterochromatin in the genome is determined as the length of C-banded chromosome material relative to the total karyotype length. Among all rodents, heterochromatin amounts tend to be larger in the larger genomes. However, this relationship is not exact and does not hold true for individual genera. In general the notion of a basic rodent genome of defined size to which various amounts of heterochromatin have been added is untenable.     

Qualitative and quantitative changes in nitrogenous compounds in senescing leaf and bark tissues of the apple

Quantitative and qualitative changes in proteins and ethanol-soluble nitrogen were followed in senescing leaf and bark tissues of ‘Golden Delicious’ apple trees (Malus domestica Borkh.). While senescing leaves lost 46% of their proteins, total bark protein increased 240% during senescence. However, the protein nitrogen gain in bark tissue was about the same as the protein nitrogen loss in leaf tissue per unit fresh weight of tissues. The pattern of bark protein accumulation appears to be gradual from early August to November and sequential from lower to higher molecular weight species of proteins. The final electrophoretic profile of total bark proteins was established at the later stages of senescence. By late November, 89% of the nitrogen in the bark tissue was found in proteins with 11% in the ethanol-soluble fractions. The total protein content of dormant bark tissue was 3.5% per gram dry tissue. Fractionation of the total bark proteins by DEAE-cellulose chromatography indicated that the final upsurge of bark proteins observed in November was associated primarily with one group of proteins (Peak III).