Interspecific allometry of the mandible,dental arch,and molar area in anthropoid primates: Functional morphology of masticatory components

Allometric equations relating the lengths and widths of the mandible and dental arch, and of molar area, were obtained in a wide range of anthropoid primates grouped into four subsets, pongids, cercopithecids, nonmarmoset platyrrhines, and marmosets. Mandibular width is negatively allometric against length across anthropoids but cercopithecids had relatively wider mandibles than nonmarmosets of the same size class. Mandibular length relative to dental arch length was isometric within and between the four groups but dental arch width scaled negatively against all the other dimensions examined in this study, indicating a functional dissociation between the dental arcade and the bony mandible. Molar area showed various scaling patterns relative to mandibular length (isometry) and width (positive). There were no parameters that scaled positively against body weight across groups, except for molar area in cercopithecids (strongly) and nonmarmoset (moderately). Notable functional specializations include relatively long dental arches in cercopithecoids, related to large, elongate bilophodont molars, and the tendency to increase relative jaw length across the range of anthropoid sizes, reflecting negative allometry of the brain (cranial bicondylar width). We caution that various allometry and functional patterns may be masked by generalizing from broad taxonomic comparison involving a large sweep of adaptative patterns.     

再论板块位移的生物效应--掸邦-马来亚板块位移对高黎贡山生物区系的影响

本文在《掸邦－ 马来亚板块位移对独龙江植物区系的生物效应》一文的基础上, 将研究范围扩大到高黎贡山的生物区系, 再次论板块位移的生物效应。结果表明, 板块位移对高黎贡山以及东喜马拉雅和云贵高原的植物区系和动物区系的演化和分布都产生了明显的隔离影响, 形成了高黎贡山独特的生物多样性。     

Plate tectonics, seaways and climate in the historical biogeography of mammals

The marsupial and placental mammals originated at a time when the pattern of geographical barriers (oceans, shallow seas and mountains) was very different from that of today, and climates were warmer. The sequence of changes in these barriers, and their effects on the dispersal of the mammal families and on the faunas of mammals in the different continents, are reviewed. The mammal fauna of South America changed greatly in the Pliocene/Pleistocene, when the newly-complete Panama Isthmus allowed the North American fauna to enter the continent and replace most of the former South American mammal families. Marsupial, but not placental, mammals reached Australia via Antarctica before Australia became isolated, while rats and bats are the only placentals that dispersed naturally from Asia to Australia in the late Cenozoic. Little is known of the early history of the mammal fauna of India. A few mammal families reached Madagascar from Africa in the early Cenozoic over a chain of islands. Africa was isolated for much of the early Cenozoic, though some groups did succeed in entering from Europe. Before the climate cooled in the mid-Cenozoic, the mammal faunas of the Northern Hemisphere were much richer than those of today.     

How to be a chaste species pluralist-realist: the origins of species modes and the synapomorphic species concept

The biological species (biospecies) concept applies only to sexually reproducing species, which means that until sexual reproduction evolved, there were no biospecies. On the universal tree of life, biospecies concepts therefore apply only to a relatively small number of clades, notably plants andanimals. I argue that it is useful to treat the various ways of being a species (species modes) as traits of clades. By extension from biospecies to the other concepts intended to capture the natural realities of what keeps taxa distinct, we can treat other modes as traits also, and so come to understand that theplurality of species concepts reflects the biological realities of monophyletic groups.We should expect that specialists in different organisms will tend to favour those concepts that best represent the intrinsic mechanisms that keep taxa distinct in their clades. I will address the question whether modes ofreproduction such as asexual and sexual reproduction are natural classes, given that they are paraphyletic in most clades.     

Bone Remodelling of a Proximal Femur with the Thrust Plate Prosthesis: An In Vitro Case

The key to the development of a successful implant is an understanding of the effect of bone remodelling on its long-term fixation. In this study, clinically observed patterns of bone remodelling have been compared with computer-based predictions for one particular design of prosthesis, the Thrust Plate Prosthesis (Centerpulse Orthopedics, Winterthur, Switzerland). Three-dimensional finite-element models were created using geometrical and bone density data obtained from CT scanning. Results from the bone remodelling simulation indicated that varying the relative rate of bone deposition/resorption and the interfacial conditions between the bone and the implant could produce the trend towards the two clinically observed patterns of remodelling.     

The evolutionary history of Late Permian Darwinulocopina Sohn, 1988 (Ostracoda) from the Russian Plate

Evolutionary trends in Late Permian Darwinulocopina are summarised with reference to extensive collections from eastern European Russia, from the White Sea in the North to the Cis-Caspian in the South. They inhabited large, shallow lakes in which the variety of habitats was favourable for high ostracod diversity. Three superfamilies are represented: the Darwinuloidea preferred lakes with terrigenous sedimentation and insignificant bicarbonate, the Suchonelloidea inhabited lakes with increased bicarbonate and could also live in low-sulphate waters, and the Darwinuloidoidea inhabited high-bicarbonate water bodies and could also survive in low-magnesium waters. Different evolutionary trends account for the different ages of the crucial stages of development of each superfamily: the beginning of the mid-Tatarian for the Darwinuloidea, the late Tatarian for the Suchonelloidea and Darwinuloidoidea.     

Mitochondrial DNA diversity and origins of South and Central American goats

We have analysed the genetic diversity of South and Central American (SCA) goats by partially sequencing the mitochondrial control region of 93 individuals with a wide geographical distribution. Nucleotide and haplotype diversities reached values of 0.020 ± 0.00081 and 0.963 ± 0.0012 respectively. We have also observed a rather weak phylogeographic structure, with almost 69% of genetic variation included in the within-breed variance component. The topology of a median-joining network analysis including 286 European, Iberian, Atlantic and SCA mitochondrial sequences was very complex, with most of the haplotypes forming part of independent small clusters. SCA sequences showed a scattered distribution throughout the network, and clustering with Spanish and Portuguese sequences occurred only occasionally, not allowing the distinguishing of a clear Iberian signature. Conversely, we found a prominent cluster including Canarian, Chilean, Argentinian and Bolivian mitochondrial haplotypes. This result was independently confirmed by constructing a Bayesian phylogenetic tree (posterior probability of 0.97). Sharing of mitochondrial haplotypes by SCA and Canarian goats suggests that goat populations from the Atlantic archipelagos, where Spanish and Portuguese ships en route to the New World used to stow food and supplies, participated in the foundation of SCA caprine breeds.     

The role of disturbance in the establishment of indigenous and alien plants at Inaccessible and Nightingale Islands in the South Atlantic Ocean

Disturbances play an important role in the establishment of vegetation at Inaccessible and Nightingale Islands in the South Atlantic Ocean. Type, altitude and age of disturbance all influenced the species richness, life-form and abundance of seedlings. A few indigenous species appear to be dependent on small disturbances, such as the clearings around albatross nests, for their perpetuation, e.g. Acaena sarmentosa and Gnaphalium thouarsii. Alien forbs and grasses, e.g. Conyza albida, Holcus lanatus, Pseudognaphalium luteo-album and Rumex obtusifolius, tended to dominate large recent disturbances such as soil-slips and depressions, and to colonize man-modified sites. Alien plants were less common on the plateau at Inaccessible Island than on the lowlands. Their success appears to be enhanced by large-scale disturbances. The highest density and diversity of seedlings occurred on large soil-slips where mineral soil was exposed and vegetation cover was minimal.     

The human extensor digitorum profundus muscle with comments on the evolution of the primate hand

Forelimb dissections on 14 genera of anthropoids including humans and 17 cases of human aneuploids has revealed a high incidence of “atavistic” musculature (Barash et al., 1970;Aziz, 1981a) in the aneuploids. The phenotypic specificity of this aneuploid musculature clearly manifests developmental retardation and instability (Shapiro, 1983) revealing not only the likely course of embryonic myogenesis in chromosomally normal humans (Cihak, 1972, 1977) but also information relevant to ontogenetic and evolutionary changes. The extensor digitorum profundus proprius complex is particularly illustrative of these characteristics of aneuploid musculature. Our examination of the variation of this muscle complex in human aneuploids and between primate genera reveals how normal ontogeny may proceed, as well as the morphological basis for the evolutionary changes in hand structure and function amongst Primates. We also consider the phylogenetic and functional significance of changes in the extensor digitorum profundus proprius with reference to the divergent locomotory and manipulative capabilities and behavior of Primates.     

Pyramidal spiriferids (brachiopods) from the Middle and Upper Devonian of the Russian Plate: Morphology, systematics, and shell wall structure

The pyramidal spiriferids Thomasaria Stainbrook, 1945 and Pyramina Ljaschenko, 1969 from the collection of brachiopods of Ljaschenko are examined. New data on the shell microornamentation and inner structure support the validity of the genus Piramina and its type species P. oskolensis Ljaschenko. A new species of the genus Thomasaria, T. rotunda is described.     

Proper names in twin worlds: Monophyly, paraphyly, and the world around us

This paper addresses the theoretical relevance of monophyletic, paraphyletic and polyphyletic groups under the paradigm of sophisticated scientific realism. The doctrine of metaphysical realism is introduced using the philosophy of Karl Popper as an example, which is then contrasted with scientific realism. A discussion of the nature of causal relations presents an account of counterfactual conditionals. The current state of art casts the theory of phylogenetic systematics in a stark contrast of classes (universals) and individuals (particulars). In practice, however, individuals piggyback on classes, or sets. Natural kinds are introduced in order to overcome this deep dichotomy. The theoretical relevance of natural kinds lies in their explanatory value, and that may change with changing context. It is for this reason that non-monophyletic groups can have explanatory value (their members can function as tokens of causally relevant kinds) within certain domains of evolutionary biology. Explanatory value is maximized by integration of the genealogical hierarchy of species and monophyletic taxa with other areas of evolutionary biology.     

Vertical and lateral variations in coccolithophore community structure across the subtropical frontal zone in the South Atlantic Ocean

In this study the coccolithophore compositions of 11 plankton depth stations along a N–S transect from the South Atlantic Subtropical Gyre to the Subantarctic Zone were examined qualitatively and quantitatively. The lateral and vertical distribution patterns of not only the most abundant taxa but also of the morphotypes of distinct species complexes, such as Calcidiscus leptoporus, Emiliania huxleyi, and Umbellosphaera tenuis were the focus. Geographic variation among morphotypes mirrors different ecological affinities of the members of a species complex. Multivariate statistics were used to infer the relationship between a set of known environmental data and species concentrations. The results of the detrended Canonical Correspondence Analysis (CCA) revealed the presence of distinct species assemblages. The Subtropical Gyre assemblage within the upper 50 m of the photic zone is mainly composed of Umbellosphaera irregularis, U. tenuis types III and IV, Discosphaera tubifera, Rhabdosphaera clavigera, S. pulchra and E. huxleyi var. corona, adapted to warm and oligotrophic conditions. In the deeper photic zone abundant Florisphaera profunda, Gephyrocapsa ericsonii and Oolithotus spp. are encountered, benefiting from higher nutrient concentrations in the vicinity of the nutricline. A well-defined Subtropical Frontal Zone (STFZ) association is clearly dominated by E. huxleyi types A and C throughout the upper 100 m of the water column. Secondary contributors in the upper photic zone are Syracosphaera spp. (mainly S. histrica, S. molischii), Michaelsarsia elegans, Ophiaster spp. and U. tenuis type II. This assemblage is associated with cooler, nutrient-rich waters. E. huxleyi type B is found deeper in the water column. Here it is accompanied by Algirosphaera robusta, G. muellerae, and S. anthos indicating a tolerance of lower light availability in environments with elevated productivity. C. leptoporus spp. leptoporus shows relatively high cell numbers in all sampled water levels throughout the STFZ. Interestingly, its coccoliths are often smaller 5 μm in lith diameter. The mean coccolithophore assemblages of a station were compared to the underlying surface sediment assemblages. For the most part, the distribution of the morphotypes is reflected in the sedimentary archive, thus proving their potential as paleoecological proxies.     

The Ziway–Shala lake basin system, Main Ethiopian Rift: Influence of volcanism, tectonics, and climatic forcing on basin formation and sedimentation

In the central sector of the Main Ethiopian Rift, the Ziway–Shala lake basin system includes four present-day residual lakes, from north to south, lakes Ziway, Langano, Abijata, and Shala. This region of East Africa is under the influence of the Intertropical Convergence Zone seasonal migration. Thus it has been designated as a potential core site by the ERICA Project (‘Environmental Research for Intertropical Climate in Africa'). The four lakes have been subjected to strong changes in water level and water salinity at least during the Late Pleistocene. The purpose of this study is to produce a model of basin formation and sediment accumulation for this system of lakes, in order to separate the effects of climatic change from environmental variations induced by local or regional factors such as volcano-tectonic forcings. In addition to an exhaustive synthesis of available data, various investigations have been used to develop this model: 3D remote sensing, high-resolution seismics, coring, and structural, sedimentological, and hydrological field studies. New AMS radiocarbon dating helped to refine the pre-existing stratigraphic framework for this region, and basin age estimations were calculated using mean sediment accumulation rates. The history of the Ziway–Shala lake basin system has been reconstructed from the Late Pliocene–Early Pleistocene period (10⁶ yr), mainly characterized by catastrophic explosive volcanic eruptions. The early-middle Pleistocene–Late Pleistocene period (10⁴–10⁶ yr) was marked by a regional volcano-tectonic paroxysm, resulting in major changes in the morphology of the area, with the formation of the Abijata, Ziway and Shala lake basins. From 0.20 Ma, the Ziway–Shala basin history is marked by the eastward migration of volcano-tectonic activity, resulting in the development of the youngest basin of the Ziway–Shala system, the Langano Basin. The joint history of sedimentation in the Ziway, Langano, Abijata, and Shala lake basins started during the early-Late Pleistocene period (10¹–10⁴ yr) and is characterized from this period up to the present-day by a series of climatically controlled rises and falls of lake level.     

Middle Eocene rodents from Peruvian Amazonia reveal the pattern and timing of caviomorph origins and biogeography

The long-term isolation of South America during most of the Cenozoic produced a highly peculiar terrestrial vertebrate biota, with a wide array of mammal groups, among which caviomorph rodents and platyrrhine primates are Mid-Cenozoic immigrants. In the absence of indisputable pre-Oligocene South American rodents or primates, the mode, timing and biogeography of these extraordinary dispersals remained debated. Here, we describe South America's oldest known rodents, based on a new diverse caviomorph assemblage from the late Middle Eocene (approx. 41 Ma) of Peru, including five small rodents with three stem caviomorphs. Instead of being tied to the Eocene/Oligocene global cooling and drying episode (approx. 34 Ma), as previously considered, the arrival of caviomorphs and their initial radiation in South America probably occurred under much warmer and wetter conditions, around the Mid-Eocene Climatic Optimum. Our phylogenetic results reaffirm the African origin of South American rodents and support a trans-Atlantic dispersal of these mammals during Middle Eocene times. This discovery further extends the gap (approx. 15 Myr) between first appearances of rodents and primates in South America.     

Human origins and the origins of humanity

As long asHomo sapiens was considered to be separated from the rest of the natural world by an unbridgeable if narrow gulf, there was no difficulty in defining, or at least in recognizing, what is «human» and what is not. But with the advent of evolutionary thought came the realization that the concept of humanity lacks any firm definition. While adminitting that any definition of humanness must be essentially intuitive and thus arbitrary, this article examines various innovations in the human fossil and archaeological records and discusses at what point humanness could be said to have been achieved. This task is complicated by the fact that there appears to be no correspondence whatever between biological and cultural innovation.     

Late Quaternary paleoproductivity and deep water circulation in the eastern South Atlantic Ocean: Evidence from benthic foraminifera

Two late Quaternary sediment cores from the northern Cape Basin in the eastern South Atlantic Ocean were analyzed for their benthic foraminiferal content and benthic stable carbon isotope composition. The locations of the cores were selected such that both of them presently are bathed by North Atlantic Deep Water (NADW) and past changes in deep water circulation should be recorded simultaneously at both locations. However, the areas are different in terms of primary production. One core was recovered from the nutrient-depleted Walvis Ridge area, whereas the other one is from the continental slope just below the coastal upwelling mixing area where present day organic matter fluxes are shown to be moderately high. Recent data served as the basis for the interpretation of the late Quaternary faunal fluctuations and the paleoceanographic reconstruction.

During the last 450,000 years, NADW flux into the eastern South Atlantic Ocean has been restricted to interglacial periods, with the strongest dominance of a NADW-driven deep water circulation during interglacial stages 1, 9 and 11. At the continental margin, high productivity faunas and very low epibenthic δ¹³C values indicate enhanced fluxes of organic matter during glacial periods. This can be attributed to a glacial increase and lateral extension of coastal upwelling. The long term glacial-interglacial paleoproductivity cycles are superimposed by high-frequency variations with a period of about 23,000 yr. Enhanced productivity in surface waters above the Walvis Ridge, far from the coast, is indicated during glacial stages 8, 10 and 12. During these periods, cold, nutrient-rich filaments from the mixing area were probably driven as far as to the southeastern flank of the Walvis Ridge.     

Plate tectonics and biogeographical patterns of the Pseudophoxinus (Pisces: Cypriniformes) species complex of central Anatolia, Turkey

We investigated the phylogenetic relationships of Pseudophoxinus (Cyprinidae: Leuciscinae) species from central Anatolia, Turkey to test the hypothesis of geographic speciation driven by early Pliocene orogenic events. We analyzed 1141 aligned base pairs of the complete cytochrome b mitochondrial gene. Phylogenetic relationships reconstructed by maximum likelihood, Bayesian likelihood, and maximum parsimony methods are identical, and generally well supported. Species and clades are restricted to geologically well-defined units, and are deeply divergent from each other. The basal diversification of central Anatolian Pseudophoxinus is estimated to have occurred approximately 15 million years ago. Our results are in agreement with a previous study of the Anatolian fish genus Aphanius that also shows a diversification pattern driven by the Pliocene orogenic events. The distribution of clades of Aphanius and Pseudophoxinus overlap, and areas of distribution comprise the same geological units. The geological history of Anatolia is likely to have had a major impact on the diversification history of many taxa occupying central Anatolia; many of these taxa are likely to be still unrecognized as distinct.     

Using phylogeny to investigate the origins of the Cape flora: the importance of taxonomic, gene and genome sampling strategies

Phylogenetic methods hold great promise for the reconstruction of the transition from precursor to modern flora and the identification of underlying factors which drive the process. The phylogenetic methods presently used to address the question of the origin of the Cape flora of South Africa are considered here. The sampling requirements of each of these methods, which include dating of diversifications using calibrated molecular trees, sister pair comparisons, lineage through time plots and biogeographical optimizations, are reviewed. Sampling of genes, genomes and species are considered. Although increased higher-level studies and increased sampling are required for robust interpretation, it is clear that much progress is already made. It is argued that despite the remarkable richness of the flora, the Cape flora is a valuable model system to demonstrate the utility of phylogenetic methods in determining the history of a modern flora.