Effect of genome combinations on stability of yield and yield components in wheats and triticales

Summary The data on number of grains/spike, 100 grain weight and grain yield/plant in eighteen genotypes of four genome combinations (AABB- 4 genotypes, AABBDD- 6 genotypes, AABBRR- 5 genotypes and AABBDDRR- 3 genotypes) were recorded for eight environments created by combining two dates of sowing, two fertilizer regimes and two spacings. Two stability parameters-regression coefficient (b) and deviation from regression (S_d ²) were computed. Joint regression analyses revealed that the genotypes differed significantly for these characters. A significant variation due to environments was also found. A comparative study of performance of genotypes belonging to four genome combinations revealed that the genes for stability are not uniformly distributed in these genome combinations. Stability may largely depend on gene combination rather than on genome combination.     

Physiological response to complex environments in annual Polygonum species of contrasting ecological breadth

Individual physiological response to complex environments is a major factor in the ecological breadth of species. This study compared individual patterns of both long-term and short-term response to controlled, multifactorial environments in four annual Polygonum species that differ in field distribution (P. cespitosum, P. hydropiper, P. lapathifolium, and P. persicaria). To test long-term response, instantaneous net photosynthetic rate and stomatal conductance were measured in situ on one full-sib replicate from five inbred lineages from each of five field populations per species, raised in all possible combinations of low or high light; dry, moist, or flooded soil; and poor or rich nutrient status. Short-term plastic adjustment to changes in light level was examined by switching individual plants of the four species from one of six multifactorial growth environments to the contrasting light environment, and measuring assimilation rates 1 h after transfer. The Polygonum species differed significantly in their patterns of long-term photosynthetic response to particular resources and resource combinations. The species known to have relatively broad ecological distributions (P. persicaria and P. lapathifolium) maintained high photosynthetic performance in a variety of moisture and nutrient environments when grown in high light, while the more narrowly distributed P. hydropiper maintained such functional levels only if given both high light and ample macronutrients. P. cespitosum, a species limited to shaded habitats, maintained low photosynthetic rates across the environmental range. Complex differences among the species in instantaneous water use efficiency (WUE) reflected their highly specific and to some extent independent patterns of photosynthetic and stomatal response to the multifactorial environments. The species also differed significantly in short-term physiological adjustment to changes in light level. Plants of P. persicaria and P. cespitosum reached 78% and 98%, respectively, of their maximum photosynthetic rates 1 h after transfer from low to high light, but P. hydropiper and P. lapathifolium plants reached only c. 60% of their maximum rates. When switched from high to low light, P. persicaria and P. cespitosum plants maintained 64–76% of their maximum rates, while P. hydropiper and P. lapathifolium plants decreased photosynthetic rates sharply to less than 50% of their maximum rates. These results indicate that the latter two species will be less able to maintain effective functional levels in variable light environments, a result consistent with their distributions in the field. Received: 23 May 1997 / Accepted: 3 March 1998     

Effect of migration and environmental heterogeneity on the maintenance of quantitative genetic variation: a simulation study

The paradox of high genetic variation observed in traits under stabilizing selection is a long‐standing problem in evolutionary theory, as mutation rates appear too low to explain observed levels of standing genetic variation under classic models of mutation–selection balance. Spatially or temporally heterogeneous environments can maintain more standing genetic variation within populations than homogeneous environments, but it is unclear whether such conditions can resolve the above discrepancy between theory and observation. Here, we use individual‐based simulations to explore the effect of various types of environmental heterogeneity on the maintenance of genetic variation (V_A) for a quantitative trait under stabilizing selection. We find that V_A is maximized at intermediate migration rates in spatially heterogeneous environments and that the observed patterns are robust to changes in population size. Spatial environmental heterogeneity increased variation by as much as 10‐fold over mutation–selection balance alone, whereas pure temporal environmental heterogeneity increased variance by only 45% at max. Our results show that some combinations of spatial heterogeneity and migration can maintain considerably more variation than mutation–selection balance, potentially reconciling the discrepancy between theoretical predictions and empirical observations. However, given the narrow regions of parameter space required for this effect, this is unlikely to provide a general explanation for the maintenance of variation. Nonetheless, our results suggest that habitat fragmentation may affect the maintenance of V_A and thereby reduce the adaptive capacity of populations.     

Probability of Inadmissible Estimates of Heritability from Regression and Half-sib Analyses

Formulae are derived for the probability of obtaining inadmissible estimates of heritability (h²) in half-sib and intra-sire regression analyses, under the additive-dominance-epistasis model of gene action. Results for several combinations of sire/dam number, h² and the proportion of additive x additive epistasis are given for the balanced situation.     

Revision of the western Palaearctic Mesoleptus (Hymenoptera: Ichneumonidae)

The western Palaearctic species of the genus Mesoleptus Gravenhorst 1829 are redescribed and keys are given for their identification. Also a key for the identification of the three stilpnine genera (Atractodes, Mesoleptus, and Stilpnus) is given and the biology of the genus is discussed shortly. The following species are described as new: Mesoleptus hispanicus n. sp., M. sawoniewiczi n. sp. and M. tunisiensis n. sp. The male of Mesoleptus tobiasi Jonaitis is described for the first time. New combinations is M. incessor (Haliday). New synonyms number 143 and 34 lectotypes are chosen.     

Microhabitat relationships among five lizard species associated with granite outcrops in fragmented agricultural landscapes of south‐eastern Australia

A fundamental part of developing effective biodiversity conservation is to understand what factors affect the distribution and abundance of particular species. However, there is a paucity of data on ecological requirements and habitat relationships for many species, especially for groups such as reptiles. Furthermore, it is not clear whether habitat relationships for particular species in a given environment are transferable to other environments within their geographical range. This has implications for the type of ‘landscape model’ used to guide management decisions in different environments worldwide. To test the hypothesis that species‐specific habitat relationships are transferable to other environments, we present microhabitat models for five common lizard species from a poorly studied habitat – insular granite outcrops, and then compared these relationships with studies from other environments in south‐eastern Australia. We recorded twelve species from five families, representing 699 individuals, from 44 outcrops in the south‐west slopes of New South Wales. Five lizard species were abundant and accounted for 95% of all observations: Egernia striolata, Ctenotus robustus, Cryptoblepharus carnabyi, Morethia boulengeri and Carlia tetradactyla (Scincidae). Linear regression modelling revealed suites of different variables related to the abundance patterns of individual species, some of which were broadly congruent with those measured for each species in other environments. However, additional variables, particular to rocky environments, were found to relate to reptile abundance in this environment. This finding means that species' habitat relationships in one habitat may not be readily transferable to other environments, even those relatively close by. Based on these data, management decisions targeting reptile conservation in agricultural landscapes, which contain rocky outcrops, will be best guided by landscape models that not only recognize gradients in habitat suitability, but are also flexible enough to incorporate intraspecies habitat variability.     

Genetic interactions between the Polycomb locus and the Antennapedia and Bithorax complexes of Drosophila

Summary We have studied the embryonic and adult phenotypes of genetic combinations between Polycomb (Pc), Regulator of bithorax (Rg-bx) and the genes of the Bithorax complex (BX-C) and the Antennapedia complex (ANT-C). The products of Pc and Rg-bx genes act antagonistically, their mutant combinations leading to the ectopic expression of genes of the BX-C and ANT-C. The genetic analysis of the Pc locus suggests it is a complex gene. Pc⁺ products behave as members of a regulatory set that negatively control the expression of BX-C and ANT-C genes. Genetic combinations between different doses of Pc, Rg-bx and the genes of the BX-C and ANT-C have phenotypes which may be interpreted as resulting from ectopic derepression of posterior selector genes repressing selector genes of anterior segments. The transformation phenotypes of certain genetic combinations differ in embryos and adults. A model of regulation of the BX-C and the ANT-C genes during the imaginal cell proliferation is presented, in which the specification state is maintained by self-activation of a given selector gene and down modulation of other selector genes in the same cell.     

Using thermodynamics to obtain geochemical information from genomes

Thermodynamic characterization of the relative stabilities of chemical compounds is a pillar of conceptual models in various fields of geosciences. Analogous models applied to genomes can yield new information about the relationship between genomes and their geochemical environments. In this perspective article, we present a chemical and thermodynamic analysis of prokaryotic lineages that have been the target of previous phylogenomic studies of evolutionary adaptation to varying redox conditions. The thermodynamic model development begins by quantifying the effects of hydrogen activity (aH₂) and temperature on the relative stabilities of organic compounds with different carbon oxidation state. When applied to proteins instead of metabolites, the same techniques can be used to identify combinations of aH₂ and temperature at which reference proteomes for Class I or Class II methanogens are relatively stable. The calculated aH₂ values are compatible with reported measurements for habitats of methanogens ranging from highly reducing submarine hydrothermal systems to less reducing environments including methanogenic sediments. In contrast to the transition between the two classes of methanogenic archaea, that between basal and terrestrial groups of Thaumarchaeota (denoting the origin of ammonia-oxidizing archaea) occurs at a less-reducing redox boundary. These examples reveal the consequences of energy minimization driving evolution and show how geochemical calculations involving biomolecules can be used to quantify and better understand the coevolution of the geosphere and biosphere.     

Selection on the morphology–physiology‐performance nexus: Lessons from freshwater stickleback morphs

Conspecifics inhabiting divergent environments frequently differ in morphology, physiology, and performance, but the interrelationships amongst traits and with Darwinian fitness remains poorly understood. We investigated population differentiation in morphology, metabolic rate, and swimming performance in three‐spined sticklebacks (Gasterosteus aculeatus L.), contrasting a marine/ancestral population with two distinct freshwater morphotypes derived from it: the “typical” low‐plated morph, and a unique “small‐plated” morph. We test the hypothesis that similar to plate loss in other freshwater populations, reduction in lateral plate size also evolved in response to selection. Additionally, we test how morphology, physiology, and performance have evolved in concert as a response to differences in selection between marine and freshwater environments. We raised pure‐bred second‐generation fish originating from three populations and quantified their lateral plate coverage, burst‐ and critical swimming speeds, as well as standard and active metabolic rates. Using a multivariate Q_ST‐F_ST framework, we detected signals of directional selection on metabolic physiology and lateral plate coverage, notably demonstrating that selection is responsible for the reduction in lateral plate coverage in a small‐plated stickleback population. We also uncovered signals of multivariate selection amongst all bivariate trait combinations except the two metrics of swimming performance. Divergence between the freshwater and marine populations exceeded neutral expectation in morphology and in most physiological and performance traits, indicating that adaptation to freshwater habitats has occurred, but through different combinations of traits in different populations. These results highlight both the complex interplay between morphology, physiology and performance in local adaptation, and a framework for their investigation.     

Phylogeny and classification of the Elachistidae s.s. (Lepidoptera: Gelechioidea)

Abstract. The classification of the gelechioid family Elachistidae (Lepidoptera) is revised on the basis of a phylogenetic analysis. Pee-Wee analysis of 131 characters of adult and pupal morphology and larval mode of life, coded for seventy elachistid species, results in a classification with three recognized genera: Perittia, Stephensia and Elachista. Elachista is further divided into four subgenera. The phylogenetic relationships of the genera and subgenera are (Perittia (Stephensia ((E. sg. Dibrachia (E. sg. Hemiprosopa, E. sg. Aphelosetia)) (E. sg. Elachista)))). Twenty-four new generic synonyms and thirty-eight new generic combinations of species are proposed. A checklist is given for the species of Elachistidae in their revised generic combinations, including nine new synonymies. Due to secondary homonymy, Elachista dasycara nom. n. is proposed as a new name for Eurynome albella Chambers.     

Salinity and Temperature Effects on Physiological Responses of <Emphasis Type="Italic">Vibrio fischeri</Emphasis> from Diverse Ecological Niches

Vibrio fischeri is a bioluminescent bacterial symbiont of sepiolid squids (Cephalopoda: Sepiolidae) and monocentrid fishes (Actinopterygii: Monocentridae). V. fischeri exhibit competitive dominance within the allopatrically distributed squid genus Euprymna, which have led to the evolution of V. fischeri host specialists. In contrast, the host genus Sepiola contains sympatric species that is thought to have given rise to V. fischeri that have evolved as host generalists. Given that these ecological lifestyles may have a direct effect upon the growth spectrum and survival limits in contrasting environments, optimal growth ranges were obtained for numerous V. fischeri isolates from both free-living and host environments. Upper and lower limits of growth were observed in sodium chloride concentrations ranging from 0.0% to 9.0%. Sepiola symbiotic isolates possessed the least variation in growth throughout the entire salinity gradient, whereas isolates from Euprymna were the least uniform at <2.0% NaCl. V. fischeri fish symbionts (CG101 and MJ101) and all free-living strains were the most dissimilar at >5.0% NaCl. Growth kinetics of symbiotic V. fischeri strains were also measured under a range of salinity and temperature combinations. Symbiotic V. fischeri ES114 and ET101 exhibited a synergistic effect for salinity and temperature, where significant differences in growth rates due to salinity existed only at low temperatures. Thus, abiotic factors such as temperature and salinity have differential effects between free-living and symbiotic strains of V. fischeri, which may alter colonization efficiency prior to infection.     

Selfing versus outcrossing propensity of the fungal pathogen Microbotryumviolaceum across Silenelatifolia host plants

In the fungal pathogen Microbotryumviolaceum mating (i.e. conjugation between cells of opposite mating type) is indispensable for infection of its host plant Silenelatifolia. Since outcrossing opportunities are potentially rare, selfing may be appropriate to ensure reproduction. On the other hand, outcrossing may create genetic variability necessary in the coevolutionary arms race with its host. We investigated the propensity of M. violaceum to outcross vs. self in different host environments. We used haploid sporidia from each of three strains from five fungal populations for pairwise mixtures of opposite mating type, representing either selfing or outcrossing combinations. Mixtures were exposed to leaf extract from seven S. latifolia plants. The proportion of conjugated sporidia quantified mating propensity. The identity of both fungal strains and host influenced conjugation. First, individual strains differed in conjugation frequency by up to 30%, and strains differed in their performance across the different hosts. Second, selfing combinations produced, on average, more conjugations than did outcrossing combinations. Selfing appears to be the predominant mode of reproduction in this fungus, and selfing preference may have evolved as a mechanism of reproductive assurance. Third, individual strains varied considerably in conjugation frequency in selfing and outcrossing combinations across different hosts. This indicates that conjugation between outcrossing partners could be favoured at least in some hosts. Since the dikaryon resulting from conjugation is the infectious unit, conjugation frequency may correspond with infection probability. This assumption was supported by an inoculation experiment, where high infectious sporidial dosage resulted in higher infections success than did low dosage. We therefore predict that sexual recombination can provide this pathogen with novel genotypes able to infect local resistant hosts.     

Estimating relationships between size and fecundity in the threatened giant garter snake in seminatural and agricultural wetlands

Increasing numbers of populations of threatened and endangered plants and animals occur in environments altered by human activity. Life history traits may vary among populations in natural and human-dominated environments, and therefore, management strategies may need to be tailored to different environments to promote persistence. The primary objectives of this project were to estimate the probability of being pregnant for females of the threatened giant garter snake (Thamnophis gigas) and test for differences in these demographic parameters between populations in seminatural wetlands and wetlands in areas dominated by rice agriculture. We also hypothesized that the probability of breeding and the number of fetuses would increase with increasing body size, a commonly reported relationship for snakes. We analysed data on T. gigas fecundity from 9 years using a Bayesian hurdle model and found no evidence of variation in the probability of being pregnant or in the number of fetuses given pregnancy for T. gigas in the two environments. The probability of being pregnant in a year was higher for females of larger size and ranged from <0.10 for snakes smaller than 631 mm snout-to-vent length (SVL) to >0.96 for the largest females. Similarly, given that a female was pregnant, the number of fetuses produced was higher for larger females. Pregnant females of average SVL were expected to produce 14 fetuses, and the largest females were expected to produce 34 fetuses. The inferences from our analyses are needed for subsequent population modeling, which will guide planning and decision-making for T. gigas.     

中国假尾孢属的研究V

本文报导中国假尾孢属的30个种,其中有2个新种:透骨草假尾孢(Pseudocercospora phrymae),槐假尾孢(P. sophorae), 6个新组合:无花果假尾孢(P. fici),爵床假尾孢(P. justiciae),木犀生假尾孢(P. osmanthicola),海桐花假尾孢(P. pittospori),色柱假尾孢(P. polygonorum),花椒假尾孢(P. xanthoxyli)和5个中国新记录。文中对新种和新组合进行了描述并绘图,其他种作了简要描述或讨论。研究的标本保存在中国科学院微生物研究所真菌标本室(HMAS)。     

THE ECOLOGY AND GENETICS OF FITNESS IN CHLAMYDOMONAS III. GENOTYPE-BY-ENVIRONMENT INTERACTION WITHIN STRAINS

The fitness of genotypes created by crossing strains of Chlamydomonas reinhardtii was measured in axenic pure culture in a set of chemically defined environments. There was substantial and highly significant genotype-by-environment interaction, with genetic correlations between environments averaging only about +0.1 for both r and K. Higher-order interactions with combinations of environmental factors appeared to be no less important than simple interactions with single factors. The importance of genotype-by-environment interaction increased with the number of environmental factors manipulated. The linear reaction norms of genotypic score on environmental mean score varied substantially among genotypes and often intersected. There was also some evidence that nonallelic genetic interactions were present, and varied among environments. The genetic correlation of r with K also varied among environments, being significantly negative in some but not in others. These results are similar in all important respects to those previously obtained with different species, and suggest that genotype-by-environment interaction is important at all genetic scales. It is argued that they provide empirical support for a general theory of diversity, the “Tangled Bank,” based on the different response of genotypes to the range of conditions found in heterogeneous natural environments.     

Genetic variation for foot-rot and Fusarium head-blight resistances among full-sib families of a self-incompatible winter rye (Secale cereale L.) population

The amount of genetic variation for resistance to foot rot caused by Pseudocercosporella herpotrichoides, Fusarium spp., and Microdochium nivale and for resistance to head blight caused by Fusarium culmorum are important parameters when estimating selection gain from recurrent selection in winter rye. One-hundred and eighty-six full-sib families of the selfincompatible population variety Halo, representing the Petkus gene pool, were tested for foot-rot resistance at five German location-year combinations (environments) and for head-blight resistance in three environments with artificial inoculation in all but one environment. Foot-rot rating was based on 25 stems per plot scored individually on a 1–9 scale. Head-blight resistance was plotwise scored on a 1–9 scale and, additionally, grain-weight per spike was measured relative to the non-inoculated control plots. Significant estimates of genotypic variance and medium-sized heritabilities (h ²=0.51–0.69) were observed in the combined analyses for all resistance traits. In four out of five environments, the amount of genetic variance was substantially smaller for foot-rot than for head-blight rating. Considerable environmental effects and significant genotype-environment interactions were found for both foot-rot and head-blight resistance. Coefficients of error-corrected correlation among environments were considerably closer than phenotypic correlations. No significant association was found between the resistances to both diseases (r=-0.20 to 0.17). In conclusion, intra-population improvement by recurrent selection should lead to substantial higher foot-rot and head-blight resistances due to significant quantitative genetic variation within Halo. Selection should be carried out in several environments. Lack of correlation between foot-rot and head-blight resistance requires separate infection tests for improving both resistances.     

Behaviour before beauty: Signal weighting during mate selection in the butterfly Papilio polytes

Mating displays often contain multiple signals. Different combinations of these signals may be equally successful at attracting a mate, as environment and signal combination may influence relative signal weighting by choosy individuals. This variation in signal weighting among choosy individuals may facilitate the maintenance of polymorphic displays and signalling behaviour. One group of animals known for their polymorphic patterning are Batesian mimetic butterflies, where the interaction of sexual selection and predation pressures is hypothesized to influence the maintenance of polymorphic wing patterning and behaviour. Males in the female‐limited polymorphic Batesian mimetic butterfly Papilio polytes use female wing pattern and female activity levels when determining whom to court. They court stationary females with mimetic wing patterns more often than stationary females with non‐mimetic, male‐like wing patterns and active females more often than inactive females. It is unclear whether females modify their behaviour to increase (or decrease) their likelihood of receiving male courtship, or whether non‐mimetic females spend more time in cryptic environments than mimetic females, to compensate for their lack of mimicry‐driven predation protection (at the cost of decreased visibility to males). In addition, relative signal weighting of female wing pattern and activity to male mate selection is unknown. To address these questions, we conducted a series of observational studies of a polymorphic P. polytes population in a large butterfly enclosure. We found that males exclusively courted active females, irrespective of female wing pattern. However, males did court active non‐mimetic females significantly more often than expected given their relative abundance in the population. Females exhibited similar activity levels, and selected similar resting environments, irrespective of wing pattern. Our results suggest that male preference for non‐mimetic females may play an active role in the maintenance of the non‐mimetic female form in natural populations, where males are likely to be in the presence of active, as well as inactive, mimetic and non‐mimetic females.     

Phytochemical and Biological Activities in Limonium Species Collected in Different Biotopes of Tunisia

A particular interest is nowadays given to natural antioxidants occurring in foods which can reduce the risk of several diseases through their protective effect. The genus Limonium is widely distributed in different salt regions of Tunisia and known in traditional medicine for the presence of highly effective viral and bacterial replication inhibitors. Limonium leaves have possible beneficial effects on human health for their antioxidant activities and free radical scavenging abilities. To exploit the potential of plants from extreme environments as new sources of natural antioxidants, we studied the extracts from leaves of eight Limonium species growing in extreme environments in Tunisia. Antioxidant molecules (polyphenols, flavonoids, flavonols, ascorbate, tocopherols), in vitro (DPPH, ORAC) and ex vivo antioxidant potential on human erythrocytes, antioxidant enzymes activities (superoxide dismutase, peroxidases, glutathione reductase) were evaluated to identify the species with the best antioxidant capacity. The results showed variability among the species considered in function of the environmental conditions of their natural biotopes, as for the antioxidants measured. In particular, L. vulgare from Oued Rane biotope, characterized by dryness and high temperatures, was the species with the highest enzymatic activity and antioxidant capacity, making it interesting as possible edible halophyte plant or as food complement.     

RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra‐arid deserts of Namibia

Deserts, even those at tropical latitudes, often have strikingly low levels of plant diversity, particularly within genera. One remarkable exception to this pattern is the genus Petalidium (Acanthaceae), in which 37 of 40 named species occupy one of the driest environments on Earth, the Namib Desert of Namibia and neighboring Angola. To contribute to understanding this enigmatic diversity, we generated RADseq data for 47 accessions of Petalidium representing 22 species. We explored the impacts of 18 different combinations of assembly parameters in de novo assembly of the data across nine levels of missing data plus a best practice assembly using a reference Acanthaceae genome for a total of 171 sequence datasets assembled. RADseq data assembled at several thresholds of missing data, including 90% missing data, yielded phylogenetic hypotheses of Petalidium that were confidently and nearly fully resolved, which is notable given that divergence time analyses suggest a crown age for African species of 3.6–1.4 Ma. De novo assembly of our data yielded the most strongly supported and well‐resolved topologies; in contrast, reference‐based assembly performed poorly, perhaps due in part to moderate phylogenetic divergence between the reference genome, Ruellia speciosa, and the ingroup. Overall, we found that Petalidium, despite the harshness of the environment in which species occur, shows a net diversification rate (0.8–2.1 species per my) on par with those of diverse genera in tropical, Mediterranean, and alpine environments.